Wall clock time and date at job start Tue Mar 31 2020 00:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37975 * 120.08054 * 2 1 4 4 C 1.38331 * 120.15237 * 179.97438 * 3 2 1 5 5 C 1.38384 * 120.29074 * 359.97334 * 4 3 2 6 6 N 1.48011 * 119.92779 * 180.02562 * 5 4 3 7 7 O 1.21802 * 120.00315 * 359.97438 * 6 5 4 8 8 O 1.21806 * 119.99848 * 180.02562 * 6 5 4 9 9 C 1.37940 * 120.14278 * 359.76657 * 5 4 3 10 10 C 1.39565 * 120.07308 * 179.97438 * 2 1 3 11 11 C 1.47852 * 120.14159 * 0.02562 * 10 2 1 12 12 O 1.21551 * 119.99974 * 353.98280 * 11 10 2 13 13 N 1.34771 * 119.99764 * 173.98904 * 11 10 2 14 14 C 1.46501 * 119.99767 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47091 * 179.97438 * 14 13 11 16 16 C 1.50693 * 109.46950 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00440 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99704 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00088 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47221 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47021 * 119.99680 * 20 18 16 23 23 H 1.48497 * 109.47117 * 239.99574 * 20 18 16 24 24 H 1.09003 * 109.47076 * 263.48585 * 1 2 3 25 25 H 1.08999 * 109.46966 * 23.47849 * 1 2 3 26 26 H 1.09000 * 109.47303 * 143.47892 * 1 2 3 27 27 H 1.08001 * 119.92101 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.86055 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.06920 * 180.25720 * 9 5 4 30 30 H 0.97003 * 120.00366 * 359.97438 * 13 11 10 31 31 H 1.08995 * 109.47419 * 59.99817 * 14 13 11 32 32 H 1.08998 * 109.46911 * 299.99060 * 14 13 11 33 33 H 1.09000 * 109.46678 * 300.00245 * 15 14 13 34 34 H 1.09004 * 109.46796 * 59.99859 * 15 14 13 35 35 H 0.97000 * 119.99936 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0016 0.0016 6 7 5.7614 0.0129 0.0028 7 8 6.3624 1.0722 0.0023 8 8 6.3784 -1.0374 0.0033 9 6 3.6022 -1.1990 0.0071 10 6 2.2063 -1.2078 0.0005 11 6 1.4718 -2.4910 0.0005 12 8 0.2613 -2.4984 0.1104 13 7 2.1446 -3.6524 -0.1212 14 6 1.4168 -4.9238 -0.1217 15 6 2.4086 -6.0791 -0.2727 16 6 1.6599 -7.3869 -0.2739 17 1 0.5843 -7.3935 -0.1763 18 6 2.3481 -8.5751 -0.3985 19 7 3.6579 -8.5671 -0.5168 20 14 1.4201 -10.1964 -0.3993 21 1 -0.0343 -9.9343 -0.2531 22 1 1.6691 -10.9086 -1.6784 23 1 1.8879 -11.0350 0.7334 24 1 -0.3633 -0.1166 1.0211 25 1 -0.3633 0.9426 -0.4094 26 1 -0.3634 -0.8259 -0.6116 27 1 1.6585 2.1293 -0.0004 28 1 4.1183 2.1330 0.0001 29 1 4.1493 -2.1301 0.0121 30 1 3.1106 -3.6465 -0.2091 31 1 0.7126 -4.9390 -0.9535 32 1 0.8731 -5.0316 0.8168 33 1 2.9520 -5.9711 -1.2113 34 1 3.1131 -6.0641 0.5589 35 1 4.1420 -9.4030 -0.6049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:54 Heat of formation + Delta-G solvation = -24.220636 kcal Electronic energy + Delta-G solvation = -20584.186998 eV Core-core repulsion = 17164.259366 eV Total energy + Delta-G solvation = -3419.927633 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.34810 -40.61807 -38.59519 -36.70539 -35.31730 -33.55386 -33.03517 -32.01666 -29.72002 -28.68789 -25.61108 -25.07123 -24.04433 -22.18657 -21.14297 -20.76339 -19.32942 -18.82231 -17.67715 -17.04879 -16.40676 -16.19162 -16.02607 -15.41784 -14.94656 -14.72965 -14.50673 -14.09076 -13.54057 -13.06559 -12.69384 -12.55613 -12.48372 -12.29554 -12.25765 -11.69655 -11.35400 -11.27848 -11.26928 -11.11023 -10.68129 -10.45848 -9.91742 -9.78743 -9.67354 -9.58924 -9.29304 -8.72253 -8.45905 -6.14169 -4.17957 -0.41421 0.25472 1.06886 1.18241 2.49002 3.22504 3.25295 3.30842 3.33674 3.38286 3.97020 4.06775 4.25125 4.36655 4.38790 4.63512 4.81331 5.05280 5.23009 5.23196 5.26142 5.38430 5.48979 5.68359 5.84689 6.11421 6.17005 6.19645 6.24836 6.57433 6.66649 7.41724 7.47247 7.51838 7.69722 7.82889 8.16626 8.30411 8.87876 9.47502 10.97322 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.003809 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.655526 B = 7348.348537 C = 8723.946014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.026 3.974 3 C -0.130 4.130 4 C -0.033 4.033 5 C -0.060 4.060 6 N 0.030 4.970 7 O -0.164 6.164 8 O -0.153 6.153 9 C -0.019 4.019 10 C -0.131 4.131 11 C 0.550 3.450 12 O -0.531 6.531 13 N -0.711 5.711 14 C 0.121 3.879 15 C 0.010 3.990 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.398 0.602 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 20.758 0.810 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.025 3.975 3 C -0.149 4.149 4 C -0.053 4.053 5 C -0.143 4.143 6 N 0.549 4.451 7 O -0.379 6.379 8 O -0.370 6.370 9 C -0.038 4.038 10 C -0.135 4.135 11 C 0.336 3.664 12 O -0.411 6.411 13 N -0.361 5.361 14 C -0.001 4.001 15 C -0.027 4.027 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.126 0.874 27 H 0.171 0.829 28 H 0.174 0.826 29 H 0.177 0.823 30 H 0.233 0.767 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.374 20.576 0.868 20.869 hybrid contribution 0.720 -0.934 -0.033 1.180 sum -2.654 19.642 0.835 19.838 Atomic orbital electron populations 1.21279 0.88402 1.04136 1.04824 1.20584 0.98260 0.91125 0.87572 1.21124 0.92359 0.98782 1.02585 1.21203 0.94687 0.97183 0.92185 1.20943 0.79665 0.96711 1.17000 1.43566 1.03405 1.00560 0.97530 1.94523 1.69596 1.20082 1.53653 1.94601 1.68224 1.21112 1.53060 1.21261 0.93799 0.97792 0.90994 1.20040 0.91817 0.95282 1.06359 1.17897 0.87197 0.83288 0.78066 1.90726 1.13134 1.86858 1.50364 1.46370 1.11267 1.06768 1.71663 1.21853 0.96228 0.80767 1.01216 1.19358 0.94215 0.91152 0.97975 1.21039 0.93721 0.90409 1.51091 0.92151 1.24999 0.94887 0.99452 0.94885 1.69960 1.06410 1.27174 1.49471 0.86455 0.80081 0.83327 0.77692 1.19590 1.20886 1.20886 0.89307 0.91546 0.87386 0.82929 0.82591 0.82340 0.76692 0.92049 0.92032 0.95793 0.95767 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.74 36.00 0.31 -0.89 16 2 C 0.03 0.25 5.91 -104.23 -0.62 -0.36 16 3 C -0.13 -0.95 9.66 -39.64 -0.38 -1.34 16 4 C -0.03 -0.28 9.55 -39.49 -0.38 -0.66 16 5 C -0.06 -0.67 6.85 -80.01 -0.55 -1.22 16 6 N 0.03 0.40 4.45 33.93 0.15 0.55 16 7 O -0.16 -2.18 18.44 -29.46 -0.54 -2.73 16 8 O -0.15 -2.25 18.44 -29.46 -0.54 -2.79 16 9 C -0.02 -0.21 9.03 -39.19 -0.35 -0.57 16 10 C -0.13 -1.57 5.87 -104.96 -0.62 -2.19 16 11 C 0.55 8.38 7.70 -12.33 -0.09 8.28 16 12 O -0.53 -9.23 13.34 5.32 0.07 -9.16 16 13 N -0.71 -11.52 5.51 -61.25 -0.34 -11.86 16 14 C 0.12 2.40 5.61 -4.04 -0.02 2.38 16 15 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 16 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 20 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 26 H 0.11 1.27 5.84 -51.93 -0.30 0.97 16 27 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 28 H 0.16 1.00 7.60 -52.49 -0.40 0.60 16 29 H 0.16 1.76 6.00 -52.49 -0.32 1.44 16 30 H 0.40 5.72 6.55 -40.82 -0.27 5.45 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 311.76 15.07 4.70 4.70 Total: -1.00 -30.91 311.76 -7.82 -38.72 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.78 Total: 0.92 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -3.25 Total: -9.34 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.55 Total: -36.29 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -1.02 Total: -14.68 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.91 -7.82 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.504 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds