Wall clock time and date at job start Tue Mar 31 2020 00:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37975 * 120.08054 * 2 1 4 4 C 1.38331 * 120.15237 * 179.97438 * 3 2 1 5 5 C 1.38384 * 120.29074 * 359.97334 * 4 3 2 6 6 N 1.48011 * 119.92779 * 180.02562 * 5 4 3 7 7 O 1.21802 * 120.00315 * 359.97438 * 6 5 4 8 8 O 1.21806 * 119.99848 * 180.02562 * 6 5 4 9 9 C 1.37940 * 120.14278 * 359.76657 * 5 4 3 10 10 C 1.39565 * 120.07308 * 179.97438 * 2 1 3 11 11 C 1.47852 * 120.14159 * 0.02562 * 10 2 1 12 12 O 1.21551 * 119.99974 * 353.98280 * 11 10 2 13 13 N 1.34771 * 119.99764 * 173.98904 * 11 10 2 14 14 C 1.46501 * 119.99767 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47091 * 179.97438 * 14 13 11 16 16 C 1.50693 * 109.46950 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00440 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99704 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00088 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47221 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47021 * 119.99680 * 20 18 16 23 23 H 1.48497 * 109.47117 * 239.99574 * 20 18 16 24 24 H 1.09003 * 109.47076 * 263.48585 * 1 2 3 25 25 H 1.08999 * 109.46966 * 23.47849 * 1 2 3 26 26 H 1.09000 * 109.47303 * 143.47892 * 1 2 3 27 27 H 1.08001 * 119.92101 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.86055 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.06920 * 180.25720 * 9 5 4 30 30 H 0.97003 * 120.00366 * 359.97438 * 13 11 10 31 31 H 1.08995 * 109.47419 * 59.99817 * 14 13 11 32 32 H 1.08998 * 109.46911 * 299.99060 * 14 13 11 33 33 H 1.09000 * 109.46678 * 300.00245 * 15 14 13 34 34 H 1.09004 * 109.46796 * 59.99859 * 15 14 13 35 35 H 0.97000 * 119.99936 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0016 0.0016 6 7 5.7614 0.0129 0.0028 7 8 6.3624 1.0722 0.0023 8 8 6.3784 -1.0374 0.0033 9 6 3.6022 -1.1990 0.0071 10 6 2.2063 -1.2078 0.0005 11 6 1.4718 -2.4910 0.0005 12 8 0.2613 -2.4984 0.1104 13 7 2.1446 -3.6524 -0.1212 14 6 1.4168 -4.9238 -0.1217 15 6 2.4086 -6.0791 -0.2727 16 6 1.6599 -7.3869 -0.2739 17 1 0.5843 -7.3935 -0.1763 18 6 2.3481 -8.5751 -0.3985 19 7 3.6579 -8.5671 -0.5168 20 14 1.4201 -10.1964 -0.3993 21 1 -0.0343 -9.9343 -0.2531 22 1 1.6691 -10.9086 -1.6784 23 1 1.8879 -11.0350 0.7334 24 1 -0.3633 -0.1166 1.0211 25 1 -0.3633 0.9426 -0.4094 26 1 -0.3634 -0.8259 -0.6116 27 1 1.6585 2.1293 -0.0004 28 1 4.1183 2.1330 0.0001 29 1 4.1493 -2.1301 0.0121 30 1 3.1106 -3.6465 -0.2091 31 1 0.7126 -4.9390 -0.9535 32 1 0.8731 -5.0316 0.8168 33 1 2.9520 -5.9711 -1.2113 34 1 3.1131 -6.0641 0.5589 35 1 4.1420 -9.4030 -0.6049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:52 Heat of formation + Delta-G solvation = -42.765820 kcal Electronic energy + Delta-G solvation = -20584.991178 eV Core-core repulsion = 17164.259366 eV Total energy + Delta-G solvation = -3420.731812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.32746 -41.65063 -39.67388 -37.73099 -36.82631 -35.04445 -34.26272 -33.11518 -31.31684 -29.63220 -27.09873 -26.21596 -25.12970 -23.39893 -22.53435 -21.96585 -20.41851 -19.81410 -18.66470 -18.62305 -17.99625 -17.13036 -16.93794 -16.70772 -16.46797 -16.16221 -15.45100 -15.31068 -14.78444 -14.36410 -14.32881 -13.46691 -13.30768 -13.28561 -13.22630 -13.06697 -12.96512 -12.72234 -12.52317 -12.34165 -12.33426 -12.29375 -11.67884 -11.45100 -10.84812 -10.65485 -10.60979 -10.45803 -10.07950 -8.25702 -6.36846 -1.33354 -0.59184 0.16595 0.26750 1.40532 1.41539 1.51928 1.54414 2.00814 2.30970 2.41115 3.09502 3.13369 3.25517 3.45753 3.64830 3.75301 3.95012 4.29440 4.38977 4.44967 4.50053 4.60958 4.65178 4.76973 4.81013 4.99431 5.08609 5.13074 5.28276 5.42363 5.49884 5.53300 5.75398 6.12079 6.39045 6.41178 6.76995 7.01076 7.33135 8.86423 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.003809 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.655526 B = 7348.348537 C = 8723.946014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.029 3.971 3 C -0.107 4.107 4 C -0.017 4.017 5 C -0.074 4.074 6 N 0.032 4.968 7 O -0.144 6.144 8 O -0.209 6.209 9 C -0.023 4.023 10 C -0.147 4.147 11 C 0.551 3.449 12 O -0.554 6.554 13 N -0.715 5.715 14 C 0.142 3.858 15 C 0.019 3.981 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.201 0.799 28 H 0.186 0.814 29 H 0.150 0.850 30 H 0.406 0.594 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 23.292 0.867 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.028 3.972 3 C -0.125 4.125 4 C -0.036 4.036 5 C -0.157 4.157 6 N 0.547 4.453 7 O -0.367 6.367 8 O -0.414 6.414 9 C -0.043 4.043 10 C -0.151 4.151 11 C 0.339 3.661 12 O -0.435 6.435 13 N -0.365 5.365 14 C 0.019 3.981 15 C -0.019 4.019 16 C -0.584 4.584 17 H 0.081 0.919 18 C -0.193 4.193 19 N -0.567 5.567 20 Si 0.791 3.209 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.204 1.204 24 H 0.105 0.895 25 H 0.122 0.878 26 H 0.097 0.903 27 H 0.218 0.782 28 H 0.203 0.797 29 H 0.168 0.832 30 H 0.242 0.758 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.641 23.025 0.925 23.507 hybrid contribution 1.079 -1.518 -0.049 1.863 sum -3.563 21.507 0.876 21.818 Atomic orbital electron populations 1.21255 0.87847 1.04984 1.04366 1.20840 0.98743 0.91096 0.86554 1.21572 0.91711 0.99372 0.99813 1.21659 0.95202 0.96989 0.89750 1.21080 0.78185 0.97733 1.18687 1.43849 1.04341 1.00168 0.96916 1.94478 1.70330 1.19879 1.52000 1.94618 1.69146 1.21518 1.56090 1.21162 0.93674 0.98097 0.91326 1.19719 0.91732 0.94398 1.09236 1.18330 0.87058 0.83886 0.76815 1.90722 1.14182 1.87359 1.51218 1.46197 1.11595 1.06174 1.72559 1.21314 0.95004 0.81239 1.00566 1.19172 0.94355 0.92124 0.96242 1.21480 0.94156 0.91860 1.50865 0.91914 1.25897 0.95727 1.03234 0.94399 1.70075 1.07976 1.28253 1.50421 0.85380 0.79047 0.78689 0.77831 1.18666 1.20323 1.20358 0.89460 0.87778 0.90293 0.78179 0.79678 0.83195 0.75822 0.92614 0.92668 0.97486 0.97495 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.74 71.23 0.62 -1.40 16 2 C 0.03 0.48 5.91 -19.61 -0.12 0.37 16 3 C -0.11 -1.03 9.66 22.23 0.21 -0.82 16 4 C -0.02 -0.22 9.55 22.33 0.21 0.00 16 5 C -0.07 -1.53 6.85 36.34 0.25 -1.28 16 6 N 0.03 0.82 4.45 -46.55 -0.21 0.62 16 7 O -0.14 -3.58 18.44 18.88 0.35 -3.23 16 8 O -0.21 -6.44 18.44 18.88 0.35 -6.09 16 9 C -0.02 -0.52 9.03 22.53 0.20 -0.31 16 10 C -0.15 -3.42 5.87 -20.09 -0.12 -3.54 16 11 C 0.55 17.05 7.70 86.79 0.67 17.72 16 12 O -0.55 -19.46 13.34 -3.88 -0.05 -19.51 16 13 N -0.71 -24.12 5.51 -465.97 -2.57 -26.68 16 14 C 0.14 5.84 5.61 86.38 0.48 6.33 16 15 C 0.02 0.92 5.09 29.85 0.15 1.08 16 16 C -0.55 -30.04 9.11 25.60 0.23 -29.81 16 17 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 18 C 0.01 0.35 5.46 84.66 0.46 0.81 16 19 N -0.93 -54.65 13.29 21.45 0.28 -54.37 16 20 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.10 0.84 8.04 -2.39 -0.02 0.82 16 26 H 0.08 1.78 5.84 -2.39 -0.01 1.76 16 27 H 0.20 0.14 8.06 -2.91 -0.02 0.12 16 28 H 0.19 1.34 7.60 -2.91 -0.02 1.32 16 29 H 0.15 3.57 6.00 -2.91 -0.02 3.55 16 30 H 0.41 12.42 6.55 -92.71 -0.61 11.81 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.01 0.35 8.14 -2.38 -0.02 0.34 16 35 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -68.91 311.76 3.98 -64.93 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.53 Total: 9.86 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 3.27 Total: -10.85 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -2.49 Total: -80.44 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: 0.64 Total: -28.84 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -68.91 3.98 -64.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.164 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds