Wall clock time and date at job start Tue Mar 31 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38383 * 119.85568 * 2 1 4 4 C 1.37934 * 120.14571 * 179.76378 * 3 2 1 5 5 C 1.39592 * 119.85146 * 0.52999 * 4 3 2 6 6 C 1.47853 * 120.14541 * 179.74720 * 5 4 3 7 7 O 1.21549 * 119.99925 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99584 * 359.97438 * 6 5 4 9 9 C 1.46504 * 119.99346 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46439 * 180.02562 * 9 8 6 11 11 C 1.50710 * 109.46730 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99815 * 359.97438 * 11 10 9 13 13 C 1.37870 * 119.99936 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99841 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00144 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47157 * 90.00311 * 15 13 11 17 17 H 1.48504 * 109.46977 * 210.00628 * 15 13 11 18 18 H 1.48502 * 109.46823 * 330.00260 * 15 13 11 19 19 C 1.39555 * 119.71269 * 359.72588 * 5 4 3 20 20 C 1.37984 * 119.85365 * 359.97438 * 19 5 4 21 21 N 1.48014 * 119.92789 * 179.97438 * 20 19 5 22 22 O 1.21803 * 120.00219 * 353.45289 * 21 20 19 23 23 O 1.21802 * 119.99851 * 173.45032 * 21 20 19 24 24 H 1.09002 * 109.47271 * 262.76708 * 1 2 3 25 25 H 1.08998 * 109.47339 * 142.76102 * 1 2 3 26 26 H 1.09008 * 109.47046 * 22.76045 * 1 2 3 27 27 H 1.08000 * 119.92796 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.07306 * 180.23337 * 4 3 2 29 29 H 0.97000 * 120.00189 * 0.02562 * 8 6 5 30 30 H 1.08995 * 109.47359 * 300.00402 * 9 8 6 31 31 H 1.08998 * 109.47117 * 60.00933 * 9 8 6 32 32 H 1.09004 * 109.47306 * 299.99691 * 10 9 8 33 33 H 1.08991 * 109.47299 * 60.00247 * 10 9 8 34 34 H 0.97006 * 119.99493 * 179.97438 * 14 13 11 35 35 H 1.08004 * 120.07602 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0049 5 6 4.2762 0.0000 -0.0013 6 6 5.7547 0.0000 -0.0017 7 8 6.3624 -1.0527 -0.0067 8 7 6.4286 1.1672 0.0034 9 6 7.8936 1.1671 0.0024 10 6 8.4036 2.6096 0.0096 11 6 9.9107 2.6096 0.0079 12 1 10.4506 1.6742 0.0027 13 6 10.6000 3.8035 0.0130 14 7 9.9424 4.9425 0.0198 15 14 12.4680 3.8035 0.0117 16 1 12.9620 3.8102 -1.3887 17 1 12.9635 5.0127 0.7172 18 1 12.9634 2.5877 0.7057 19 6 3.5754 -1.2068 -0.0067 20 6 2.1955 -1.1998 -0.0052 21 7 1.4506 -2.4788 -0.0115 22 8 2.0495 -3.5318 -0.1381 23 8 0.2386 -2.4782 0.1100 24 1 -0.3634 -0.1294 1.0195 25 1 -0.3634 -0.8181 -0.6219 26 1 -0.3633 0.9477 -0.3976 27 1 1.6523 2.1334 0.0004 28 1 4.1116 2.1445 0.0087 29 1 5.9436 2.0072 0.0077 30 1 8.2575 0.6489 0.8896 31 1 8.2563 0.6576 -0.8903 32 1 8.0397 3.1281 -0.8775 33 1 8.0409 3.1187 0.9024 34 1 10.4275 5.7826 0.0238 35 1 4.1118 -2.1442 -0.0111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138027.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:28 Heat of formation + Delta-G solvation = -23.862129 kcal Electronic energy + Delta-G solvation = -20340.577995 eV Core-core repulsion = 16920.665908 eV Total energy + Delta-G solvation = -3419.912087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.47885 -40.43532 -38.74024 -36.85785 -35.17426 -33.63439 -32.92509 -32.24918 -29.90769 -28.33046 -26.49895 -24.86112 -23.06808 -22.99369 -21.27850 -20.83165 -19.12504 -18.76115 -17.81186 -17.21531 -16.69242 -16.15472 -15.79855 -15.25167 -15.03354 -14.62738 -14.45746 -14.27845 -13.61085 -13.37001 -13.13327 -12.75392 -12.52366 -12.38236 -12.14139 -11.59139 -11.33963 -11.31667 -11.12683 -10.93036 -10.73394 -10.48536 -10.12268 -10.03827 -9.67431 -9.50523 -9.36921 -8.74982 -8.49356 -6.18887 -4.22125 -0.43796 0.26825 1.03585 1.14453 2.45423 3.20416 3.23776 3.30552 3.35361 3.35798 3.93872 3.98910 4.32056 4.34091 4.43040 4.45112 4.76745 4.98258 5.15111 5.17209 5.18715 5.36037 5.54440 5.55135 5.66073 5.80395 6.15925 6.18113 6.25082 6.54674 6.63653 7.36780 7.45155 7.46900 7.68509 7.78808 8.13887 8.30339 8.83484 9.43510 10.92654 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041268 B = 0.002954 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.330931 B = 9477.585557 C =10128.700743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 C -0.128 4.128 4 C -0.032 4.032 5 C -0.130 4.130 6 C 0.549 3.451 7 O -0.535 6.535 8 N -0.711 5.711 9 C 0.120 3.880 10 C 0.012 3.988 11 C -0.524 4.524 12 H 0.060 0.940 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.004 3.996 20 C -0.058 4.058 21 N 0.034 4.966 22 O -0.161 6.161 23 O -0.159 6.159 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.397 0.603 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.263 0.737 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.443 -5.071 -0.013 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.001 4.001 3 C -0.146 4.146 4 C -0.051 4.051 5 C -0.134 4.134 6 C 0.334 3.666 7 O -0.413 6.413 8 N -0.361 5.361 9 C -0.002 4.002 10 C -0.025 4.025 11 C -0.562 4.562 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.016 4.016 20 C -0.141 4.141 21 N 0.551 4.449 22 O -0.376 6.376 23 O -0.373 6.373 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.232 0.768 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.578 -5.015 -0.008 19.243 hybrid contribution 0.672 0.295 0.007 0.734 sum -17.905 -4.720 0.000 18.517 Atomic orbital electron populations 1.21369 0.88228 1.04717 1.04822 1.20087 0.98281 0.90458 0.91269 1.21120 0.93820 0.97381 1.02301 1.21897 0.94559 0.98306 0.90307 1.20111 0.94916 0.92669 1.05720 1.17940 0.85802 0.84898 0.77978 1.90802 1.69343 1.31078 1.50112 1.46276 1.09713 1.07286 1.72808 1.21861 0.75063 1.01925 1.01326 1.19342 0.96741 0.88510 0.97923 1.21025 0.90761 0.92798 1.51643 0.92148 1.24992 0.98932 0.95469 0.94833 1.69949 1.35754 0.97368 1.50200 0.86494 0.85025 0.77689 0.78264 1.20500 1.21117 1.19673 1.21098 0.90579 1.00803 0.89145 1.20818 0.92162 0.83632 1.17523 1.43500 1.01053 1.02689 0.97680 1.94587 1.70407 1.19484 1.53106 1.94453 0.96271 1.93658 1.52938 0.89004 0.88215 0.90497 0.82826 0.83198 0.76805 0.92033 0.92025 0.95854 0.95845 0.92762 0.81650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.66 36.00 0.31 -0.58 16 2 C 0.00 0.01 5.89 -104.53 -0.62 -0.61 16 3 C -0.13 -0.90 9.65 -39.64 -0.38 -1.29 16 4 C -0.03 -0.27 9.54 -39.19 -0.37 -0.65 16 5 C -0.13 -1.56 5.87 -104.97 -0.62 -2.18 16 6 C 0.55 8.64 7.77 -12.33 -0.10 8.54 16 7 O -0.53 -10.43 16.35 5.32 0.09 -10.35 16 8 N -0.71 -11.14 5.51 -61.24 -0.34 -11.48 16 9 C 0.12 2.37 5.61 -4.04 -0.02 2.34 16 10 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 11 C -0.52 -13.95 9.11 -34.44 -0.31 -14.27 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 15 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C 0.00 0.04 9.10 -39.18 -0.36 -0.31 16 20 C -0.06 -0.66 6.82 -80.01 -0.55 -1.20 16 21 N 0.03 0.43 4.45 33.93 0.15 0.58 16 22 O -0.16 -2.30 18.46 -29.46 -0.54 -2.84 16 23 O -0.16 -1.94 15.34 -29.46 -0.45 -2.40 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.10 0.77 5.86 -51.93 -0.30 0.46 16 26 H 0.08 0.33 8.03 -51.92 -0.42 -0.09 16 27 H 0.15 0.60 8.05 -52.49 -0.42 0.17 16 28 H 0.15 0.97 6.41 -52.49 -0.34 0.63 16 29 H 0.40 5.05 6.51 -40.82 -0.27 4.78 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.17 2.18 7.21 -52.48 -0.38 1.80 16 LS Contribution 311.66 15.07 4.70 4.70 Total: -1.00 -31.53 311.66 -7.71 -39.24 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.78 Total: -0.22 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.25 Total: -8.52 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.55 Total: -35.37 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.91 Total: -15.59 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.53 -7.71 -39.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138027.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.379 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds