Wall clock time and date at job start Tue Mar 31 2020 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38383 * 119.85568 * 2 1 4 4 C 1.37934 * 120.14571 * 179.76378 * 3 2 1 5 5 C 1.39592 * 119.85146 * 0.52999 * 4 3 2 6 6 C 1.47853 * 120.14541 * 179.74720 * 5 4 3 7 7 O 1.21549 * 119.99925 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99584 * 359.97438 * 6 5 4 9 9 C 1.46504 * 119.99346 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46439 * 180.02562 * 9 8 6 11 11 C 1.50710 * 109.46730 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99815 * 359.97438 * 11 10 9 13 13 C 1.37870 * 119.99936 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99841 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00144 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47157 * 90.00311 * 15 13 11 17 17 H 1.48504 * 109.46977 * 210.00628 * 15 13 11 18 18 H 1.48502 * 109.46823 * 330.00260 * 15 13 11 19 19 C 1.39555 * 119.71269 * 359.72588 * 5 4 3 20 20 C 1.37984 * 119.85365 * 359.97438 * 19 5 4 21 21 N 1.48014 * 119.92789 * 179.97438 * 20 19 5 22 22 O 1.21803 * 120.00219 * 353.45289 * 21 20 19 23 23 O 1.21802 * 119.99851 * 173.45032 * 21 20 19 24 24 H 1.09002 * 109.47271 * 262.76708 * 1 2 3 25 25 H 1.08998 * 109.47339 * 142.76102 * 1 2 3 26 26 H 1.09008 * 109.47046 * 22.76045 * 1 2 3 27 27 H 1.08000 * 119.92796 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.07306 * 180.23337 * 4 3 2 29 29 H 0.97000 * 120.00189 * 0.02562 * 8 6 5 30 30 H 1.08995 * 109.47359 * 300.00402 * 9 8 6 31 31 H 1.08998 * 109.47117 * 60.00933 * 9 8 6 32 32 H 1.09004 * 109.47306 * 299.99691 * 10 9 8 33 33 H 1.08991 * 109.47299 * 60.00247 * 10 9 8 34 34 H 0.97006 * 119.99493 * 179.97438 * 14 13 11 35 35 H 1.08004 * 120.07602 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0049 5 6 4.2762 0.0000 -0.0013 6 6 5.7547 0.0000 -0.0017 7 8 6.3624 -1.0527 -0.0067 8 7 6.4286 1.1672 0.0034 9 6 7.8936 1.1671 0.0024 10 6 8.4036 2.6096 0.0096 11 6 9.9107 2.6096 0.0079 12 1 10.4506 1.6742 0.0027 13 6 10.6000 3.8035 0.0130 14 7 9.9424 4.9425 0.0198 15 14 12.4680 3.8035 0.0117 16 1 12.9620 3.8102 -1.3887 17 1 12.9635 5.0127 0.7172 18 1 12.9634 2.5877 0.7057 19 6 3.5754 -1.2068 -0.0067 20 6 2.1955 -1.1998 -0.0052 21 7 1.4506 -2.4788 -0.0115 22 8 2.0495 -3.5318 -0.1381 23 8 0.2386 -2.4782 0.1100 24 1 -0.3634 -0.1294 1.0195 25 1 -0.3634 -0.8181 -0.6219 26 1 -0.3633 0.9477 -0.3976 27 1 1.6523 2.1334 0.0004 28 1 4.1116 2.1445 0.0087 29 1 5.9436 2.0072 0.0077 30 1 8.2575 0.6489 0.8896 31 1 8.2563 0.6576 -0.8903 32 1 8.0397 3.1281 -0.8775 33 1 8.0409 3.1187 0.9024 34 1 10.4275 5.7826 0.0238 35 1 4.1118 -2.1442 -0.0111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138027.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:27 Heat of formation + Delta-G solvation = -43.356892 kcal Electronic energy + Delta-G solvation = -20341.423352 eV Core-core repulsion = 16920.665908 eV Total energy + Delta-G solvation = -3420.757443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.43103 -41.49035 -39.82522 -37.84078 -36.75722 -35.01332 -34.25508 -33.10355 -31.57981 -29.16312 -27.64913 -26.42567 -24.11487 -23.82757 -22.90231 -22.00786 -20.21235 -19.77366 -18.77755 -18.54818 -18.20784 -17.35040 -16.70844 -16.64310 -16.41746 -16.17599 -15.28627 -15.18562 -14.93411 -14.70924 -14.30844 -13.80199 -13.48292 -13.30254 -13.20221 -12.98137 -12.95619 -12.57141 -12.54852 -12.33240 -12.27670 -11.77811 -11.73183 -11.49977 -11.15031 -10.82051 -10.61630 -10.36792 -10.07305 -8.25470 -6.34954 -1.31417 -0.60413 0.17315 0.25222 1.41564 1.42374 1.47601 1.53041 1.97534 2.33769 2.41497 3.10076 3.18545 3.23225 3.52150 3.60858 3.65685 3.92928 4.31609 4.39706 4.45564 4.51840 4.65920 4.69857 4.78931 4.82753 4.97660 5.01366 5.10928 5.16282 5.44204 5.46311 5.56930 5.76706 6.14444 6.41868 6.44959 6.77618 7.03606 7.34411 8.86077 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041268 B = 0.002954 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.330931 B = 9477.585557 C =10128.700743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.013 3.987 3 C -0.107 4.107 4 C -0.018 4.018 5 C -0.145 4.145 6 C 0.551 3.449 7 O -0.581 6.581 8 N -0.702 5.702 9 C 0.138 3.862 10 C 0.023 3.977 11 C -0.548 4.548 12 H 0.057 0.943 13 C 0.011 3.989 14 N -0.924 5.924 15 Si 0.961 3.039 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.009 4.009 20 C -0.073 4.073 21 N 0.034 4.966 22 O -0.227 6.227 23 O -0.125 6.125 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.203 0.797 28 H 0.177 0.823 29 H 0.414 0.586 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.266 0.734 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.299 -2.849 0.064 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 C -0.125 4.125 4 C -0.036 4.036 5 C -0.149 4.149 6 C 0.338 3.662 7 O -0.463 6.463 8 N -0.353 5.353 9 C 0.015 3.985 10 C -0.015 4.015 11 C -0.586 4.586 12 H 0.075 0.925 13 C -0.189 4.189 14 N -0.563 5.563 15 Si 0.786 3.214 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.029 4.029 20 C -0.156 4.156 21 N 0.547 4.453 22 O -0.426 6.426 23 O -0.351 6.351 24 H 0.120 0.880 25 H 0.106 0.894 26 H 0.130 0.870 27 H 0.220 0.780 28 H 0.194 0.806 29 H 0.252 0.748 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.350 -2.867 0.051 20.551 hybrid contribution 1.051 -0.289 -0.002 1.090 sum -19.299 -3.156 0.049 19.556 Atomic orbital electron populations 1.21491 0.86213 1.06241 1.05316 1.20566 0.99692 0.89658 0.88979 1.21636 0.92960 0.98375 0.99531 1.22219 0.95534 0.97590 0.88254 1.19709 0.92325 0.94082 1.08765 1.18436 0.87461 0.83847 0.76417 1.90777 1.70766 1.32645 1.52102 1.45972 1.08080 1.08376 1.72904 1.21343 0.77543 0.99345 1.00282 1.19146 0.95314 0.90178 0.96826 1.21459 0.92725 0.92868 1.51593 0.92465 1.25791 1.03458 0.95163 0.94452 1.70034 1.37454 0.97879 1.50934 0.85509 0.79653 0.77819 0.78467 1.19872 1.20523 1.19278 1.20915 0.91337 1.00238 0.90430 1.20927 0.91769 0.83648 1.19302 1.43739 1.01102 1.03129 0.97304 1.94606 1.70653 1.20564 1.56740 1.94407 0.96423 1.93762 1.50472 0.87969 0.89434 0.86981 0.77993 0.80581 0.74824 0.93179 0.93152 0.96775 0.96763 0.92508 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.66 71.24 0.62 -0.57 16 2 C 0.01 0.18 5.89 -19.81 -0.12 0.06 16 3 C -0.11 -0.96 9.65 22.23 0.21 -0.74 16 4 C -0.02 -0.24 9.54 22.52 0.21 -0.02 16 5 C -0.14 -3.37 5.87 -20.09 -0.12 -3.49 16 6 C 0.55 17.58 7.77 86.79 0.67 18.25 16 7 O -0.58 -23.84 16.35 -3.87 -0.06 -23.90 16 8 N -0.70 -21.74 5.51 -465.96 -2.57 -24.31 16 9 C 0.14 5.54 5.61 86.38 0.48 6.03 16 10 C 0.02 1.07 5.09 29.85 0.15 1.22 16 11 C -0.55 -29.39 9.11 25.60 0.23 -29.16 16 12 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 13 C 0.01 0.57 5.46 84.65 0.46 1.03 16 14 N -0.92 -51.86 13.29 21.45 0.28 -51.58 16 15 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 C -0.01 -0.23 9.10 22.53 0.21 -0.02 16 20 C -0.07 -1.59 6.82 36.34 0.25 -1.34 16 21 N 0.03 0.87 4.45 -46.55 -0.21 0.66 16 22 O -0.23 -7.02 18.46 18.88 0.35 -6.67 16 23 O -0.12 -2.90 15.34 18.88 0.29 -2.61 16 24 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.09 1.05 5.86 -2.39 -0.01 1.04 16 26 H 0.11 0.25 8.03 -2.38 -0.02 0.24 16 27 H 0.20 0.00 8.05 -2.91 -0.02 -0.02 16 28 H 0.18 1.48 6.41 -2.91 -0.02 1.46 16 29 H 0.41 9.82 6.51 -92.71 -0.60 9.22 16 30 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 35 H 0.14 4.19 7.21 -2.91 -0.02 4.17 16 Total: -1.00 -71.19 311.66 3.92 -67.27 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.53 Total: 5.51 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 3.27 Total: -8.75 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -2.49 Total: -75.22 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: 0.58 Total: -33.18 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -71.19 3.92 -67.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138027.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.913 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds