Wall clock time and date at job start Tue Mar 31 2020 00:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38386 * 119.93143 * 2 1 4 4 C 1.38338 * 120.29375 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14357 * 0.27975 * 4 3 2 6 6 C 1.39557 * 119.85105 * 359.42390 * 5 4 3 7 7 C 1.47847 * 120.13975 * 180.27240 * 6 5 4 8 8 O 1.21558 * 119.99586 * 180.29861 * 7 6 5 9 9 N 1.34771 * 120.00421 * 0.30064 * 7 6 5 10 10 C 1.46503 * 120.00411 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47168 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46833 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00014 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00162 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99765 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00162 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47190 * 89.99777 * 16 14 12 18 18 H 1.48508 * 109.47047 * 209.99946 * 16 14 12 19 19 H 1.48504 * 109.47150 * 329.99755 * 16 14 12 20 20 C 1.37934 * 119.92676 * 179.97438 * 2 1 3 21 21 N 1.48015 * 120.07255 * 0.02627 * 20 2 1 22 22 O 1.21799 * 120.00472 * 89.99790 * 21 20 2 23 23 O 1.21808 * 120.00109 * 269.99470 * 21 20 2 24 24 H 1.09000 * 109.47101 * 89.99688 * 1 2 3 25 25 H 1.08995 * 109.47612 * 210.00344 * 1 2 3 26 26 H 1.09003 * 109.46938 * 330.00187 * 1 2 3 27 27 H 1.08002 * 119.85090 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.92371 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.06871 * 179.70410 * 5 4 3 30 30 H 0.97006 * 120.00095 * 0.02562 * 9 7 6 31 31 H 1.09001 * 109.46697 * 300.00135 * 10 9 7 32 32 H 1.08993 * 109.47043 * 59.99688 * 10 9 7 33 33 H 1.09001 * 109.47160 * 299.99531 * 11 10 9 34 34 H 1.08993 * 109.47656 * 59.99742 * 11 10 9 35 35 H 0.96997 * 120.00201 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0192 -0.0048 6 6 3.5910 -1.1937 0.0015 7 6 4.3352 -2.4712 0.0020 8 8 3.7313 -3.5262 0.0020 9 7 5.6829 -2.4662 0.0025 10 6 6.4202 -3.7321 0.0035 11 6 7.9234 -3.4468 0.0045 12 6 8.6818 -4.7491 0.0049 13 1 8.1453 -5.6865 0.0049 14 6 10.0606 -4.7439 0.0053 15 7 10.7139 -3.6025 0.0048 16 14 11.0006 -6.3581 0.0066 17 1 11.2501 -6.7867 -1.3932 18 1 12.2974 -6.1752 0.7069 19 1 10.2018 -7.3956 0.7071 20 6 2.1951 -1.1954 0.0005 21 7 1.4550 -2.4773 0.0005 22 8 1.1509 -3.0049 -1.0542 23 8 1.1501 -3.0045 1.0554 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6539 2.1325 -0.0004 28 1 4.1136 2.1475 0.0001 29 1 5.3612 0.0275 -0.0092 30 1 6.1647 -1.6243 0.0029 31 1 6.1587 -4.3041 0.8938 32 1 6.1594 -4.3052 -0.8862 33 1 8.1852 -2.8747 -0.8855 34 1 8.1839 -2.8739 0.8944 35 1 11.6838 -3.5988 0.0047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:32 Heat of formation + Delta-G solvation = -20.283762 kcal Electronic energy + Delta-G solvation = -20964.687934 eV Core-core repulsion = 17544.931017 eV Total energy + Delta-G solvation = -3419.756917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.15154 -40.24841 -38.82377 -36.24457 -35.21286 -33.84829 -32.88736 -32.25153 -29.88026 -28.00606 -26.41756 -25.16992 -23.68969 -22.14902 -21.20744 -20.46626 -19.18926 -18.56330 -17.68022 -17.47669 -16.54370 -15.81001 -15.60137 -15.32301 -14.99812 -14.65382 -14.44320 -14.42604 -13.42215 -13.36694 -13.16274 -12.58822 -12.57084 -12.37166 -12.20773 -11.43066 -11.30264 -11.10173 -10.95191 -10.85384 -10.70814 -10.46944 -10.17555 -9.87064 -9.66362 -9.53996 -9.35054 -8.76004 -8.47044 -6.16024 -4.19115 0.06106 0.38231 0.74856 1.41939 2.46714 3.10605 3.25505 3.26720 3.32990 3.38162 3.90086 4.09380 4.27364 4.38184 4.45119 4.51907 4.72375 4.90569 4.98040 5.02364 5.21524 5.37912 5.42496 5.52986 5.63491 5.91490 6.15840 6.20463 6.48091 6.54042 6.63693 7.37755 7.49075 7.63362 7.76556 7.81566 8.13162 8.26577 8.86312 9.46332 10.95591 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.003658 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.478357 B = 7653.632854 C = 8442.120914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 C -0.092 4.092 4 C -0.085 4.085 5 C -0.083 4.083 6 C -0.078 4.078 7 C 0.535 3.465 8 O -0.529 6.529 9 N -0.703 5.703 10 C 0.119 3.881 11 C 0.013 3.987 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.020 3.980 21 N 0.035 4.965 22 O -0.134 6.134 23 O -0.137 6.137 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.398 0.602 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.023 0.977 34 H 0.024 0.976 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.499 15.340 -0.076 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.048 4.048 3 C -0.111 4.111 4 C -0.103 4.103 5 C -0.102 4.102 6 C -0.082 4.082 7 C 0.319 3.681 8 O -0.407 6.407 9 N -0.353 5.353 10 C -0.002 4.002 11 C -0.024 4.024 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.062 4.062 21 N 0.566 4.434 22 O -0.358 6.358 23 O -0.360 6.360 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.167 0.833 28 H 0.167 0.833 29 H 0.169 0.831 30 H 0.234 0.766 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.311 15.283 -0.064 22.353 hybrid contribution 0.839 -0.665 -0.004 1.071 sum -15.472 14.618 -0.068 21.286 Atomic orbital electron populations 1.21025 0.89042 1.04574 1.04124 1.19601 0.97455 0.90249 0.97523 1.21241 0.94397 0.96880 0.98570 1.21460 0.94105 0.98841 0.95885 1.21475 1.01206 0.90284 0.97237 1.20031 0.90575 0.96182 1.01446 1.18097 0.83554 0.87720 0.78705 1.90899 1.68272 1.31767 1.49731 1.46227 1.04848 1.12038 1.72147 1.21910 0.94148 0.82659 1.01492 1.19339 0.86811 0.98350 0.97935 1.21024 0.91270 0.92265 1.51618 0.92115 1.24992 0.97741 0.96670 0.94813 1.69946 1.07933 1.25191 1.50240 0.86482 0.79165 0.83488 0.78277 1.20485 1.21118 1.19636 1.20792 0.91252 0.84368 1.09780 1.43095 0.98534 1.01200 1.00544 1.94536 1.56267 1.64239 1.20738 1.94539 1.56387 1.64324 1.20720 0.89274 0.91028 0.89295 0.83329 0.83323 0.83070 0.76634 0.91900 0.91893 0.95828 0.95818 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.77 36.00 0.35 -0.67 16 2 C -0.05 -0.47 5.87 -104.68 -0.61 -1.08 16 3 C -0.09 -0.62 9.69 -39.49 -0.38 -1.00 16 4 C -0.09 -0.57 10.03 -39.64 -0.40 -0.96 16 5 C -0.08 -0.79 9.54 -39.18 -0.37 -1.17 16 6 C -0.08 -1.10 5.87 -104.97 -0.62 -1.72 16 7 C 0.54 9.70 7.77 -12.33 -0.10 9.61 16 8 O -0.53 -11.80 14.45 -14.05 -0.20 -12.01 16 9 N -0.70 -12.18 5.51 -61.25 -0.34 -12.52 16 10 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 11 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 12 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 13 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 16 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C 0.02 0.28 6.12 -79.55 -0.49 -0.21 16 21 N 0.04 0.61 1.48 34.15 0.05 0.66 16 22 O -0.13 -2.47 18.93 -33.22 -0.63 -3.10 16 23 O -0.14 -2.53 18.79 -33.23 -0.62 -3.16 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.69 7.31 -51.93 -0.38 0.31 16 26 H 0.09 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 28 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 29 H 0.15 1.15 6.41 -52.48 -0.34 0.81 16 30 H 0.40 5.61 6.51 -40.82 -0.27 5.35 16 31 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -34.59 314.43 -8.38 -42.97 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.90 Total: -1.24 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.19 Total: -7.63 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.45 Total: -36.79 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.46 Total: -18.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.59 -8.38 -42.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.689 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds