Wall clock time and date at job start Tue Mar 31 2020 00:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38386 * 119.93143 * 2 1 4 4 C 1.38338 * 120.29375 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14357 * 0.27975 * 4 3 2 6 6 C 1.39557 * 119.85105 * 359.42390 * 5 4 3 7 7 C 1.47847 * 120.13975 * 180.27240 * 6 5 4 8 8 O 1.21558 * 119.99586 * 180.29861 * 7 6 5 9 9 N 1.34771 * 120.00421 * 0.30064 * 7 6 5 10 10 C 1.46503 * 120.00411 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47168 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46833 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00014 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00162 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99765 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00162 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47190 * 89.99777 * 16 14 12 18 18 H 1.48508 * 109.47047 * 209.99946 * 16 14 12 19 19 H 1.48504 * 109.47150 * 329.99755 * 16 14 12 20 20 C 1.37934 * 119.92676 * 179.97438 * 2 1 3 21 21 N 1.48015 * 120.07255 * 0.02627 * 20 2 1 22 22 O 1.21799 * 120.00472 * 89.99790 * 21 20 2 23 23 O 1.21808 * 120.00109 * 269.99470 * 21 20 2 24 24 H 1.09000 * 109.47101 * 89.99688 * 1 2 3 25 25 H 1.08995 * 109.47612 * 210.00344 * 1 2 3 26 26 H 1.09003 * 109.46938 * 330.00187 * 1 2 3 27 27 H 1.08002 * 119.85090 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.92371 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.06871 * 179.70410 * 5 4 3 30 30 H 0.97006 * 120.00095 * 0.02562 * 9 7 6 31 31 H 1.09001 * 109.46697 * 300.00135 * 10 9 7 32 32 H 1.08993 * 109.47043 * 59.99688 * 10 9 7 33 33 H 1.09001 * 109.47160 * 299.99531 * 11 10 9 34 34 H 1.08993 * 109.47656 * 59.99742 * 11 10 9 35 35 H 0.96997 * 120.00201 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0192 -0.0048 6 6 3.5910 -1.1937 0.0015 7 6 4.3352 -2.4712 0.0020 8 8 3.7313 -3.5262 0.0020 9 7 5.6829 -2.4662 0.0025 10 6 6.4202 -3.7321 0.0035 11 6 7.9234 -3.4468 0.0045 12 6 8.6818 -4.7491 0.0049 13 1 8.1453 -5.6865 0.0049 14 6 10.0606 -4.7439 0.0053 15 7 10.7139 -3.6025 0.0048 16 14 11.0006 -6.3581 0.0066 17 1 11.2501 -6.7867 -1.3932 18 1 12.2974 -6.1752 0.7069 19 1 10.2018 -7.3956 0.7071 20 6 2.1951 -1.1954 0.0005 21 7 1.4550 -2.4773 0.0005 22 8 1.1509 -3.0049 -1.0542 23 8 1.1501 -3.0045 1.0554 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6539 2.1325 -0.0004 28 1 4.1136 2.1475 0.0001 29 1 5.3612 0.0275 -0.0092 30 1 6.1647 -1.6243 0.0029 31 1 6.1587 -4.3041 0.8938 32 1 6.1594 -4.3052 -0.8862 33 1 8.1852 -2.8747 -0.8855 34 1 8.1839 -2.8739 0.8944 35 1 11.6838 -3.5988 0.0047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:31 Heat of formation + Delta-G solvation = -42.237411 kcal Electronic energy + Delta-G solvation = -20965.639915 eV Core-core repulsion = 17544.931017 eV Total energy + Delta-G solvation = -3420.708899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.35454 -41.43387 -39.94319 -37.58262 -36.90528 -35.13922 -34.37340 -33.17631 -31.64385 -28.95325 -27.42117 -26.88910 -24.94943 -23.17054 -22.91449 -21.78333 -20.24742 -19.87596 -18.88959 -18.63331 -18.48999 -17.17152 -16.81995 -16.55574 -16.24925 -16.03905 -15.66096 -15.36111 -14.87609 -14.62716 -14.34514 -13.77670 -13.40001 -13.32452 -13.26698 -12.99689 -12.89113 -12.80984 -12.59622 -12.35313 -12.26640 -12.19179 -11.82587 -11.58091 -11.27978 -10.68944 -10.63631 -10.41332 -10.16411 -8.28485 -6.38673 -0.83606 -0.62730 -0.33649 0.33744 1.40124 1.40251 1.42899 1.51700 1.80536 2.26096 2.38994 3.06653 3.12938 3.18302 3.52044 3.69060 3.84052 4.01986 4.11001 4.34530 4.35117 4.42103 4.50254 4.69557 4.72133 4.85792 4.94907 4.97312 5.00904 5.12373 5.36691 5.44735 5.49203 5.71313 6.08975 6.21918 6.35794 6.72155 6.84682 7.30678 8.83233 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.003658 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.478357 B = 7653.632854 C = 8442.120914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 C -0.065 4.065 4 C -0.064 4.064 5 C -0.075 4.075 6 C -0.113 4.113 7 C 0.532 3.468 8 O -0.583 6.583 9 N -0.694 5.694 10 C 0.139 3.861 11 C 0.026 3.974 12 C -0.551 4.551 13 H 0.055 0.945 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.963 3.037 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.269 1.269 20 C -0.014 4.014 21 N 0.039 4.961 22 O -0.163 6.163 23 O -0.168 6.168 24 H 0.097 0.903 25 H 0.043 0.957 26 H 0.128 0.872 27 H 0.202 0.798 28 H 0.200 0.800 29 H 0.170 0.830 30 H 0.416 0.584 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.347 18.956 -0.114 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.051 4.051 3 C -0.083 4.083 4 C -0.081 4.081 5 C -0.094 4.094 6 C -0.117 4.117 7 C 0.319 3.681 8 O -0.465 6.465 9 N -0.344 5.344 10 C 0.015 3.985 11 C -0.012 4.012 12 C -0.589 4.589 13 H 0.074 0.926 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.788 3.212 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.095 4.095 21 N 0.566 4.434 22 O -0.385 6.385 23 O -0.389 6.389 24 H 0.115 0.885 25 H 0.062 0.938 26 H 0.146 0.854 27 H 0.219 0.781 28 H 0.217 0.783 29 H 0.187 0.813 30 H 0.254 0.746 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.161 18.926 -0.100 24.888 hybrid contribution 0.769 -1.601 0.004 1.777 sum -15.392 17.325 -0.096 23.175 Atomic orbital electron populations 1.21134 0.87771 1.05114 1.04822 1.20090 0.98592 0.89644 0.96788 1.21919 0.94707 0.97084 0.94607 1.22072 0.94237 0.99287 0.92526 1.21828 1.02209 0.89580 0.95802 1.19768 0.90274 0.95477 1.06148 1.18775 0.83366 0.88971 0.77010 1.90861 1.69209 1.34283 1.52113 1.45921 1.04924 1.11421 1.72178 1.21381 0.92802 0.84169 1.00113 1.19129 0.88219 0.96957 0.96879 1.21423 0.92174 0.93301 1.52040 0.92634 1.25809 0.98597 1.00129 0.94241 1.70028 1.08422 1.27052 1.50673 0.85469 0.77859 0.79320 0.78566 1.19732 1.20226 1.19382 1.21128 0.91337 0.83363 1.13634 1.43633 0.97862 1.02241 0.99698 1.94488 1.57331 1.65726 1.20996 1.94494 1.57546 1.65842 1.21004 0.88452 0.93817 0.85387 0.78133 0.78279 0.81281 0.74608 0.93391 0.93344 0.96683 0.96681 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.77 71.23 0.70 -1.06 16 2 C -0.05 -0.85 5.87 -19.90 -0.12 -0.97 16 3 C -0.07 -0.48 9.69 22.33 0.22 -0.27 16 4 C -0.06 -0.46 10.03 22.23 0.22 -0.24 16 5 C -0.08 -1.19 9.54 22.53 0.21 -0.98 16 6 C -0.11 -3.14 5.87 -20.09 -0.12 -3.25 16 7 C 0.53 20.11 7.77 86.79 0.67 20.78 16 8 O -0.58 -27.90 14.45 14.62 0.21 -27.69 16 9 N -0.69 -24.65 5.51 -465.97 -2.57 -27.21 16 10 C 0.14 6.11 5.61 86.38 0.48 6.60 16 11 C 0.03 1.27 5.09 29.85 0.15 1.42 16 12 C -0.55 -30.80 9.11 25.60 0.23 -30.57 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.01 0.64 5.46 84.66 0.46 1.10 16 15 N -0.92 -52.96 13.29 21.45 0.28 -52.68 16 16 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 C -0.01 -0.39 6.12 36.63 0.22 -0.16 16 21 N 0.04 1.47 1.48 -45.86 -0.07 1.40 16 22 O -0.16 -6.53 18.93 22.48 0.43 -6.11 16 23 O -0.17 -6.77 18.79 22.47 0.42 -6.35 16 24 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 0.84 7.31 -2.39 -0.02 0.82 16 26 H 0.13 0.66 8.08 -2.39 -0.02 0.64 16 27 H 0.20 -0.46 8.06 -2.91 -0.02 -0.48 16 28 H 0.20 -0.40 8.06 -2.91 -0.02 -0.43 16 29 H 0.17 1.98 6.41 -2.91 -0.02 1.96 16 30 H 0.42 11.54 6.51 -92.70 -0.60 10.94 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -81.93 314.43 4.61 -77.32 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 0.53 Total: 3.32 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 3.35 Total: -7.59 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -2.35 Total: -78.49 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: 1.06 Total: -40.15 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -81.93 4.61 -77.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.080 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds