Wall clock time and date at job start Tue Mar 31 2020 00:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37980 * 120.07803 * 2 1 4 4 C 1.38333 * 120.14406 * 180.23104 * 3 2 1 5 5 C 1.38375 * 120.29556 * 359.79089 * 4 3 2 6 6 C 1.37936 * 120.14402 * 359.94843 * 5 4 3 7 7 N 1.48009 * 120.07238 * 180.02562 * 6 5 4 8 8 O 1.21807 * 120.00035 * 359.97438 * 7 6 5 9 9 O 1.21800 * 120.00200 * 179.97438 * 7 6 5 10 10 C 1.39558 * 120.06977 * 179.74556 * 2 1 3 11 11 C 1.47846 * 120.14823 * 0.02562 * 10 2 1 12 12 O 1.21553 * 119.99844 * 269.72660 * 11 10 2 13 13 N 1.34771 * 119.99797 * 89.72506 * 11 10 2 14 14 C 1.46506 * 120.00088 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47320 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47198 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00199 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00446 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99814 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47261 * 90.00440 * 20 18 16 22 22 H 1.48504 * 109.47274 * 210.00467 * 20 18 16 23 23 H 1.48500 * 109.47158 * 329.99915 * 20 18 16 24 24 H 1.08995 * 109.47045 * 270.25918 * 1 2 3 25 25 H 1.08993 * 109.46751 * 30.25759 * 1 2 3 26 26 H 1.08992 * 109.47187 * 150.25586 * 1 2 3 27 27 H 1.08001 * 119.92438 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.84795 * 179.76340 * 4 3 2 29 29 H 1.07996 * 119.92708 * 179.97438 * 5 4 3 30 30 H 0.96995 * 120.00304 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.46578 * 299.99945 * 14 13 11 32 32 H 1.08999 * 109.46905 * 59.99328 * 14 13 11 33 33 H 1.09004 * 109.46895 * 299.99925 * 15 14 13 34 34 H 1.08997 * 109.47106 * 59.99439 * 15 14 13 35 35 H 0.96993 * 120.00290 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1940 0.0000 4 6 3.5819 1.1956 -0.0048 5 6 4.2813 0.0016 -0.0053 6 6 3.6023 -1.1990 0.0001 7 7 4.3520 -2.4751 0.0001 8 8 5.5700 -2.4659 -0.0051 9 8 3.7510 -3.5345 0.0054 10 6 2.2063 -1.2077 0.0054 11 6 1.4720 -2.4909 0.0105 12 8 1.1741 -3.0164 1.0653 13 7 1.1329 -3.0779 -1.1543 14 6 0.4047 -4.3491 -1.1493 15 6 0.1466 -4.7948 -2.5900 16 6 -0.6019 -6.1027 -2.5849 17 1 -0.8666 -6.5697 -1.6477 18 6 -0.9478 -6.7038 -3.7765 19 7 -1.6014 -7.8450 -3.7720 20 14 -0.4892 -5.8965 -5.3974 21 1 0.8477 -6.3775 -5.8293 22 1 -1.4986 -6.2479 -6.4285 23 1 -0.4524 -4.4222 -5.2232 24 1 -0.3633 0.0046 1.0276 25 1 -0.3632 0.8876 -0.5178 26 1 -0.3633 -0.8922 -0.5098 27 1 1.6586 2.1293 -0.0004 28 1 4.1183 2.1330 -0.0087 29 1 5.3613 0.0098 -0.0095 30 1 1.3709 -2.6587 -1.9960 31 1 0.9983 -5.1057 -0.6362 32 1 -0.5463 -4.2211 -0.6323 33 1 -0.4467 -4.0382 -3.1036 34 1 1.0978 -4.9229 -3.1067 35 1 -1.8444 -8.2680 -4.6103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138139.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:04 Heat of formation + Delta-G solvation = -20.051449 kcal Electronic energy + Delta-G solvation = -21340.707119 eV Core-core repulsion = 17920.960275 eV Total energy + Delta-G solvation = -3419.746843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.31569 -40.38450 -38.68381 -36.54630 -35.04888 -33.69571 -32.88985 -32.28509 -30.09999 -27.90735 -26.86492 -25.23508 -23.43795 -22.17138 -20.84930 -20.58940 -18.99288 -18.64514 -17.75038 -17.54913 -16.90948 -16.36126 -15.89529 -15.38396 -14.60025 -14.42796 -14.27448 -14.11313 -13.62492 -13.17285 -12.98446 -12.76006 -12.60111 -12.50302 -12.08503 -11.56540 -11.49030 -11.24477 -11.13171 -11.10067 -10.44474 -10.38597 -9.98405 -9.94260 -9.72314 -9.49486 -9.31201 -8.66858 -8.56610 -6.09378 -4.09293 -0.43563 0.38561 1.14093 1.23915 2.61685 2.77272 3.24413 3.26571 3.33637 3.34330 3.91427 4.12052 4.36067 4.38969 4.41970 4.50344 4.71303 5.01106 5.07091 5.23584 5.23783 5.26506 5.48636 5.62186 5.68637 5.92051 6.08335 6.22456 6.27571 6.57731 6.64369 7.11772 7.24265 7.56269 7.66836 7.71560 8.31829 8.46707 8.95327 9.50743 11.03713 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020815 B = 0.004617 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.861198 B = 6062.742200 C = 6477.113394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.050 4.050 3 C -0.073 4.073 4 C -0.104 4.104 5 C -0.064 4.064 6 C -0.015 4.015 7 N 0.020 4.980 8 O -0.160 6.160 9 O -0.128 6.128 10 C -0.059 4.059 11 C 0.558 3.442 12 O -0.520 6.520 13 N -0.708 5.708 14 C 0.132 3.868 15 C -0.022 4.022 16 C -0.521 4.521 17 H 0.077 0.923 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.267 1.267 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.395 0.605 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.052 23.641 5.354 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.051 4.051 3 C -0.091 4.091 4 C -0.123 4.123 5 C -0.083 4.083 6 C -0.099 4.099 7 N 0.542 4.458 8 O -0.374 6.374 9 O -0.347 6.347 10 C -0.064 4.064 11 C 0.341 3.659 12 O -0.396 6.396 13 N -0.357 5.357 14 C 0.010 3.990 15 C -0.060 4.060 16 C -0.559 4.559 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.192 1.192 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.166 0.834 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.228 0.772 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.386 23.694 5.990 25.838 hybrid contribution 0.678 0.184 -1.333 1.507 sum 9.064 23.877 4.657 25.961 Atomic orbital electron populations 1.20973 0.88639 1.04428 1.04091 1.20053 0.97506 0.90307 0.97235 1.21482 0.94348 0.98189 0.95084 1.21313 0.94154 0.97704 0.99103 1.21025 1.02221 0.89587 0.95488 1.21161 0.90881 0.84818 1.12991 1.43582 1.01260 1.02782 0.98202 1.94509 0.95327 1.94073 1.53502 1.94699 1.70025 1.18095 1.51918 1.20051 0.91055 0.96648 0.98665 1.17693 0.79591 0.83149 0.85430 1.90833 1.54411 1.63590 1.30772 1.46214 1.57419 1.25099 1.06935 1.21615 0.95093 0.81862 1.00397 1.19800 0.97068 0.97835 0.91247 1.20896 1.36005 1.04073 0.94962 0.90490 1.24976 0.94496 0.94630 0.99051 1.69897 1.39542 1.17064 1.27130 0.86778 0.78503 0.80215 0.83714 1.20164 1.21282 1.19224 0.89499 0.89948 0.90177 0.83408 0.83180 0.82503 0.77238 0.91052 0.91679 0.96133 0.96313 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.62 36.01 0.35 -0.73 16 2 C -0.05 -0.48 5.91 -104.22 -0.62 -1.10 16 3 C -0.07 -0.46 9.69 -39.64 -0.38 -0.84 16 4 C -0.10 -0.62 10.04 -39.50 -0.40 -1.01 16 5 C -0.06 -0.57 9.55 -39.64 -0.38 -0.95 16 6 C -0.02 -0.20 6.88 -79.56 -0.55 -0.75 16 7 N 0.02 0.33 4.45 34.15 0.15 0.48 16 8 O -0.16 -2.51 18.45 -29.46 -0.54 -3.06 16 9 O -0.13 -2.46 16.26 -33.27 -0.54 -3.00 16 10 C -0.06 -0.80 5.63 -104.97 -0.59 -1.39 16 11 C 0.56 9.61 3.12 -12.33 -0.04 9.57 16 12 O -0.52 -10.89 16.99 -3.46 -0.06 -10.95 16 13 N -0.71 -12.13 5.44 -61.25 -0.33 -12.46 16 14 C 0.13 2.72 5.61 -4.04 -0.02 2.70 16 15 C -0.02 -0.50 4.16 -27.89 -0.12 -0.62 16 16 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 17 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 20 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.08 0.85 7.08 -51.93 -0.37 0.49 16 27 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 28 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16 29 H 0.16 1.12 7.61 -52.49 -0.40 0.72 16 30 H 0.39 5.83 8.46 -40.82 -0.35 5.49 16 31 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 34 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -34.85 311.95 -7.69 -42.54 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.00 Total: 0.03 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.17 Total: -8.15 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.59 Total: -38.62 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.14 Total: -17.01 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.85 -7.69 -42.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138139.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.489 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds