Wall clock time and date at job start Mon Mar 30 2020 23:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21553 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.47846 * 120.00003 * 180.02562 * 13 12 11 16 16 C 1.39596 * 120.14396 * 359.72905 * 15 13 12 17 17 C 1.37938 * 119.85487 * 179.69845 * 16 15 13 18 18 C 1.38389 * 120.14049 * 0.59930 * 17 16 15 19 19 C 1.38330 * 120.29304 * 359.67205 * 18 17 16 20 20 N 1.48015 * 119.92898 * 180.02562 * 19 18 17 21 21 O 1.21803 * 119.99925 * 180.02562 * 20 19 18 22 22 O 1.21796 * 119.99676 * 0.02588 * 20 19 18 23 23 C 1.37982 * 120.14818 * 0.02889 * 19 18 17 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 32 32 H 1.08005 * 120.07305 * 359.97438 * 16 15 13 33 33 H 1.07998 * 119.93276 * 180.29376 * 17 16 15 34 34 H 1.07996 * 119.85018 * 179.70427 * 18 17 16 35 35 H 1.07993 * 120.07856 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7877 -7.5934 -0.0020 15 6 2.9434 -8.4951 -0.0020 16 6 4.3165 -8.2435 -0.0076 17 6 5.2076 -9.2965 -0.0013 18 6 4.7429 -10.6000 -0.0020 19 6 3.3835 -10.8562 -0.0021 20 7 2.8954 -12.2536 -0.0022 21 8 1.6987 -12.4806 -0.0028 22 8 3.6903 -13.1763 -0.0017 23 6 2.4815 -9.8120 -0.0021 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.3858 -5.9235 -0.0021 32 1 4.6804 -7.2267 -0.0124 33 1 6.2701 -9.1033 -0.0009 34 1 5.4447 -11.4209 -0.0019 35 1 1.4205 -10.0133 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:29 Heat of formation + Delta-G solvation = -27.757947 kcal Electronic energy + Delta-G solvation = -19890.638441 eV Core-core repulsion = 16470.557419 eV Total energy + Delta-G solvation = -3420.081022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.51053 -40.60853 -38.80945 -36.87254 -35.70540 -33.64357 -32.65306 -32.07484 -31.10850 -27.24771 -26.78741 -24.67540 -23.01357 -22.86177 -21.10790 -20.67262 -19.38430 -18.92941 -17.84530 -17.46168 -16.84979 -16.62290 -16.04066 -15.62331 -15.20547 -14.77854 -14.52379 -14.28315 -13.98843 -13.40148 -12.97755 -12.42232 -12.33378 -11.96725 -11.89753 -11.86486 -11.52413 -11.43112 -10.96234 -10.87203 -10.71723 -10.30367 -10.21489 -9.99804 -9.92616 -9.54330 -9.23249 -9.06347 -8.44722 -6.09294 -4.13141 -0.61150 0.10395 0.88744 0.99869 2.29273 2.90622 3.13723 3.26190 3.31762 3.32966 3.86542 3.95358 4.15924 4.20620 4.31774 4.37571 4.66061 4.99157 5.14412 5.26501 5.31976 5.37622 5.50722 5.60323 5.67070 5.98814 6.03522 6.18663 6.43401 6.62632 6.85334 7.30382 7.34170 7.53522 7.65120 7.88163 7.98688 8.28689 8.93102 9.51499 11.01886 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.047210 B = 0.002542 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.948367 B =11011.258007 C =11578.456583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.715 5.715 13 C 0.551 3.449 14 O -0.527 6.527 15 C -0.124 4.124 16 C -0.038 4.038 17 C -0.121 4.121 18 C -0.037 4.037 19 C -0.052 4.052 20 N 0.028 4.972 21 O -0.152 6.152 22 O -0.159 6.159 23 C 0.000 4.000 24 H 0.263 0.737 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.489 -19.420 -0.012 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.366 5.366 13 C 0.336 3.664 14 O -0.404 6.404 15 C -0.128 4.128 16 C -0.057 4.057 17 C -0.139 4.139 18 C -0.056 4.056 19 C -0.135 4.135 20 N 0.549 4.451 21 O -0.369 6.369 22 O -0.375 6.375 23 C -0.020 4.020 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.233 0.767 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 11.682 -18.741 -0.013 22.084 hybrid contribution 0.816 0.699 -0.001 1.074 sum 12.498 -18.042 -0.013 21.948 Atomic orbital electron populations 1.69953 1.06074 1.26924 1.50202 1.25032 0.94872 0.99347 0.95171 0.86631 0.79566 0.83043 0.78588 1.20226 1.21219 1.20231 1.21137 0.92922 0.90902 1.51412 0.92696 1.19025 0.93809 0.90755 0.97769 1.21911 0.99875 0.93174 1.00972 1.21787 0.91743 0.84646 1.02571 1.46133 1.11105 1.05566 1.73761 1.17935 0.87844 0.82823 0.77788 1.90839 1.15735 1.84545 1.49315 1.20085 0.94113 0.93382 1.05214 1.21901 0.91905 1.01023 0.90827 1.21210 1.01398 0.90469 1.00824 1.21284 0.92843 0.99353 0.92148 1.21019 0.94986 0.81591 1.15867 1.43558 1.00941 1.03027 0.97611 1.94594 0.98864 1.90482 1.52994 1.94533 1.52735 1.36815 1.53379 1.21137 1.01981 0.89654 0.89254 0.92777 0.96198 0.96191 0.92605 0.92595 0.91212 0.91205 0.76710 0.83301 0.82661 0.82444 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.16 5.27 -26.73 -0.14 -2.30 16 11 C 0.11 1.81 5.67 -4.04 -0.02 1.78 16 12 N -0.71 -8.66 5.51 -61.25 -0.34 -9.00 16 13 C 0.55 7.20 7.77 -12.33 -0.10 7.10 16 14 O -0.53 -9.07 16.35 5.32 0.09 -8.99 16 15 C -0.12 -1.19 5.87 -104.97 -0.62 -1.81 16 16 C -0.04 -0.23 9.54 -39.19 -0.37 -0.60 16 17 C -0.12 -0.56 10.03 -39.64 -0.40 -0.95 16 18 C -0.04 -0.24 9.55 -39.49 -0.38 -0.62 16 19 C -0.05 -0.49 6.84 -80.01 -0.55 -1.04 16 20 N 0.03 0.33 4.45 33.93 0.15 0.48 16 21 O -0.15 -2.01 18.44 -29.46 -0.54 -2.55 16 22 O -0.16 -1.88 18.44 -29.46 -0.54 -2.42 16 23 C 0.00 0.00 9.10 -39.18 -0.36 -0.36 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.40 3.46 6.51 -40.82 -0.27 3.19 16 32 H 0.15 0.52 6.41 -52.48 -0.34 0.18 16 33 H 0.16 0.22 8.06 -52.49 -0.42 -0.20 16 34 H 0.16 0.73 7.60 -52.49 -0.40 0.33 16 35 H 0.17 1.89 7.20 -52.49 -0.38 1.51 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -32.91 317.20 -8.05 -40.96 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.88 Total: -2.43 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.48 Total: -11.27 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.55 Total: -33.92 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.00 Total: -13.95 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.91 -8.05 -40.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.199 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds