Wall clock time and date at job start Mon Mar 30 2020 23:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21553 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.47846 * 120.00003 * 180.02562 * 13 12 11 16 16 C 1.39596 * 120.14396 * 359.72905 * 15 13 12 17 17 C 1.37938 * 119.85487 * 179.69845 * 16 15 13 18 18 C 1.38389 * 120.14049 * 0.59930 * 17 16 15 19 19 C 1.38330 * 120.29304 * 359.67205 * 18 17 16 20 20 N 1.48015 * 119.92898 * 180.02562 * 19 18 17 21 21 O 1.21803 * 119.99925 * 180.02562 * 20 19 18 22 22 O 1.21796 * 119.99676 * 0.02588 * 20 19 18 23 23 C 1.37982 * 120.14818 * 0.02889 * 19 18 17 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 32 32 H 1.08005 * 120.07305 * 359.97438 * 16 15 13 33 33 H 1.07998 * 119.93276 * 180.29376 * 17 16 15 34 34 H 1.07996 * 119.85018 * 179.70427 * 18 17 16 35 35 H 1.07993 * 120.07856 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7877 -7.5934 -0.0020 15 6 2.9434 -8.4951 -0.0020 16 6 4.3165 -8.2435 -0.0076 17 6 5.2076 -9.2965 -0.0013 18 6 4.7429 -10.6000 -0.0020 19 6 3.3835 -10.8562 -0.0021 20 7 2.8954 -12.2536 -0.0022 21 8 1.6987 -12.4806 -0.0028 22 8 3.6903 -13.1763 -0.0017 23 6 2.4815 -9.8120 -0.0021 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.3858 -5.9235 -0.0021 32 1 4.6804 -7.2267 -0.0124 33 1 6.2701 -9.1033 -0.0009 34 1 5.4447 -11.4209 -0.0019 35 1 1.4205 -10.0133 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:29 Heat of formation + Delta-G solvation = -48.881964 kcal Electronic energy + Delta-G solvation = -19891.554447 eV Core-core repulsion = 16470.557419 eV Total energy + Delta-G solvation = -3420.997028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.35712 -41.49570 -39.67150 -37.77018 -37.08624 -35.32434 -33.73751 -32.80544 -32.46198 -28.79963 -27.67743 -25.88744 -24.31399 -23.62449 -22.38635 -21.88416 -20.36531 -19.80139 -18.70515 -18.60836 -18.11331 -17.61034 -17.13019 -16.83428 -16.49846 -15.98817 -15.57425 -15.32412 -15.09238 -14.26924 -14.20279 -13.79451 -13.52654 -13.44008 -13.09780 -12.77043 -12.71826 -12.55837 -12.44126 -12.38379 -12.35676 -11.67960 -11.67698 -11.30687 -11.11155 -10.83556 -10.57536 -10.54404 -10.20519 -8.19224 -6.30734 -1.35727 -0.58382 0.16508 0.23920 1.42710 1.45234 1.49699 1.53109 1.89449 2.35607 2.42529 3.15015 3.23342 3.32298 3.53391 3.61361 3.77331 4.00717 4.15994 4.19723 4.46171 4.53149 4.57420 4.77753 4.84657 4.92968 4.93463 5.04654 5.17250 5.28870 5.34489 5.52147 5.70879 5.84678 6.21502 6.36615 6.37327 6.87425 7.00962 7.39244 8.92653 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.047210 B = 0.002542 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.948367 B =11011.258007 C =11578.456583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.127 3.873 12 N -0.699 5.699 13 C 0.551 3.449 14 O -0.580 6.580 15 C -0.138 4.138 16 C -0.018 4.018 17 C -0.097 4.097 18 C -0.023 4.023 19 C -0.067 4.067 20 N 0.030 4.970 21 O -0.215 6.215 22 O -0.138 6.138 23 C -0.016 4.016 24 H 0.262 0.738 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.419 0.581 32 H 0.184 0.816 33 H 0.206 0.794 34 H 0.183 0.817 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.415 -18.998 -0.015 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.088 0.912 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.351 5.351 13 C 0.338 3.662 14 O -0.461 6.461 15 C -0.142 4.142 16 C -0.037 4.037 17 C -0.115 4.115 18 C -0.042 4.042 19 C -0.150 4.150 20 N 0.545 4.455 21 O -0.418 6.418 22 O -0.363 6.363 23 C -0.036 4.036 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.258 0.742 32 H 0.201 0.799 33 H 0.223 0.777 34 H 0.201 0.799 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 16.549 -18.315 -0.015 24.683 hybrid contribution -0.573 0.534 0.000 0.783 sum 15.976 -17.780 -0.015 23.903 Atomic orbital electron populations 1.70110 1.08011 1.27829 1.51732 1.26035 0.95708 1.03616 0.94872 0.85480 0.78170 0.77945 0.79326 1.18920 1.21514 1.18930 1.21666 0.93853 0.91894 1.50361 0.91204 1.18955 0.94540 0.93086 0.95050 1.21605 0.98427 0.91253 1.02621 1.21343 0.91935 0.85244 1.01128 1.45782 1.11610 1.04372 1.73353 1.18445 0.87778 0.83608 0.76330 1.90817 1.18339 1.85311 1.51663 1.19735 0.95156 0.91245 1.08055 1.22320 0.89858 1.03404 0.88074 1.21768 1.03362 0.88614 0.97763 1.21778 0.91261 1.01338 0.89845 1.21128 0.96239 0.79604 1.18072 1.43901 1.00624 1.04033 0.96913 1.94609 0.99738 1.91124 1.56343 1.94479 1.52354 1.37851 1.51628 1.20959 1.01160 0.90749 0.90756 0.92883 0.99057 0.99050 0.90821 0.90811 0.92879 0.92873 0.74203 0.79895 0.77686 0.79926 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.11 13.29 21.45 0.28 -55.83 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.54 -28.73 9.11 25.60 0.23 -28.50 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.06 4.97 29.85 0.15 1.20 16 10 C -0.10 -3.46 5.27 30.59 0.16 -3.30 16 11 C 0.13 4.02 5.67 86.38 0.49 4.51 16 12 N -0.70 -15.81 5.51 -465.97 -2.57 -18.38 16 13 C 0.55 14.34 7.77 86.79 0.67 15.01 16 14 O -0.58 -21.23 16.35 -3.88 -0.06 -21.29 16 15 C -0.14 -2.46 5.87 -20.09 -0.12 -2.58 16 16 C -0.02 -0.13 9.54 22.53 0.21 0.08 16 17 C -0.10 -0.30 10.03 22.23 0.22 -0.08 16 18 C -0.02 -0.20 9.55 22.33 0.21 0.01 16 19 C -0.07 -1.22 6.84 36.34 0.25 -0.97 16 20 N 0.03 0.70 4.45 -46.56 -0.21 0.50 16 21 O -0.21 -6.23 18.44 18.88 0.35 -5.88 16 22 O -0.14 -3.12 18.44 18.89 0.35 -2.77 16 23 C -0.02 -0.34 9.10 22.53 0.21 -0.13 16 24 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.42 5.67 6.51 -92.71 -0.60 5.07 16 32 H 0.18 0.08 6.41 -2.91 -0.02 0.06 16 33 H 0.21 -1.20 8.06 -2.91 -0.02 -1.22 16 34 H 0.18 0.72 7.60 -2.91 -0.02 0.70 16 35 H 0.14 3.65 7.20 -2.91 -0.02 3.63 16 Total: -1.00 -77.29 317.20 3.85 -73.44 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: 0.52 Total: 0.43 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.16 Total: -14.54 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -2.49 Total: -73.71 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: 0.63 Total: -29.95 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -77.29 3.85 -73.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.556 kcal (2) G-P(sol) polarization free energy of solvation -77.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds