Wall clock time and date at job start Mon Mar 30 2020 23:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00445 * 2 1 4 4 H 1.48499 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46701 * 300.00117 * 3 2 1 6 6 H 1.48499 * 109.46739 * 59.99802 * 3 2 1 7 7 C 1.37879 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47388 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47574 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47247 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99852 * 179.97438 * 12 11 10 14 14 O 1.21553 * 119.99747 * 359.97438 * 13 12 11 15 15 C 1.47846 * 119.99834 * 180.02562 * 13 12 11 16 16 C 1.39593 * 120.14530 * 6.49888 * 15 13 12 17 17 C 1.37933 * 119.85260 * 180.02562 * 16 15 13 18 18 C 1.38390 * 120.14701 * 359.71997 * 17 16 15 19 19 C 1.38342 * 120.28596 * 0.55748 * 18 17 16 20 20 C 1.37974 * 120.14587 * 359.44404 * 19 18 17 21 21 N 1.48019 * 120.07018 * 180.29849 * 20 19 18 22 22 O 1.21802 * 120.00082 * 50.77094 * 21 20 19 23 23 O 1.21802 * 119.99810 * 230.76329 * 21 20 19 24 24 H 0.97005 * 119.99563 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47400 * 59.99807 * 9 7 2 26 26 H 1.08995 * 109.47394 * 299.99889 * 9 7 2 27 27 H 1.08996 * 109.47059 * 59.99849 * 10 9 7 28 28 H 1.09002 * 109.47194 * 299.99807 * 10 9 7 29 29 H 1.08996 * 109.47182 * 59.99763 * 11 10 9 30 30 H 1.09002 * 109.46571 * 300.00027 * 11 10 9 31 31 H 0.96996 * 120.00682 * 359.97438 * 12 11 10 32 32 H 1.07995 * 120.07306 * 359.97438 * 16 15 13 33 33 H 1.08002 * 119.92903 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.85546 * 180.29849 * 18 17 16 35 35 H 1.07999 * 119.92348 * 179.72541 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 -0.0001 12 7 2.4321 -6.1007 0.0005 13 6 1.9827 -7.3714 0.0006 14 8 0.7877 -7.5934 0.0007 15 6 2.9435 -8.4951 0.0018 16 6 4.3105 -8.2486 0.1395 17 6 5.2016 -9.3015 0.1392 18 6 4.7424 -10.6005 0.0088 19 6 3.3894 -10.8512 -0.1337 20 6 2.4876 -9.8070 -0.1351 21 7 1.0397 -10.0777 -0.2811 22 8 0.4994 -10.9031 0.4334 23 8 0.3886 -9.4751 -1.1156 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6045 -0.8895 29 1 0.8537 -5.0446 -0.8903 30 1 0.8532 -5.0451 0.8897 31 1 3.3857 -5.9236 0.0008 32 1 4.6698 -7.2356 0.2450 33 1 6.2596 -9.1121 0.2452 34 1 5.4438 -11.4217 0.0141 35 1 3.0380 -11.8669 -0.2395 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:44 Heat of formation + Delta-G solvation = -16.989494 kcal Electronic energy + Delta-G solvation = -20563.219705 eV Core-core repulsion = 17143.605638 eV Total energy + Delta-G solvation = -3419.614067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.19074 -40.34586 -38.83158 -36.35968 -35.62320 -33.56608 -32.39021 -32.33035 -30.97310 -27.28178 -26.44650 -24.56240 -23.30225 -22.40390 -20.99760 -20.47779 -19.40102 -18.57195 -17.94366 -17.40276 -16.50985 -16.11562 -15.75273 -15.59276 -15.24974 -15.02380 -14.47348 -14.24821 -13.76153 -13.32494 -13.00432 -12.42904 -12.32432 -11.90869 -11.84239 -11.47809 -11.11716 -10.97124 -10.94704 -10.81115 -10.61197 -10.13156 -10.07547 -9.94878 -9.88673 -9.49582 -9.16078 -8.98083 -8.41234 -6.05357 -4.08951 -0.29477 0.20318 0.93532 1.31436 2.36588 2.90007 3.12538 3.27362 3.34986 3.37884 3.84937 4.02808 4.15115 4.35748 4.40486 4.43797 4.66143 4.92119 5.19064 5.30266 5.30516 5.48419 5.58471 5.67509 5.76132 6.05745 6.25186 6.37885 6.49727 6.68384 6.90792 7.36891 7.59058 7.69049 7.70564 7.92683 8.03247 8.33170 8.97774 9.55548 11.05903 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030405 B = 0.003151 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.665168 B = 8884.049685 C = 9708.148831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.710 5.710 13 C 0.535 3.465 14 O -0.509 6.509 15 C -0.077 4.077 16 C -0.081 4.081 17 C -0.085 4.085 18 C -0.092 4.092 19 C -0.074 4.074 20 C 0.015 3.985 21 N 0.018 4.982 22 O -0.177 6.177 23 O -0.082 6.082 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.398 0.602 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.917 -21.657 -0.114 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.362 5.362 13 C 0.319 3.681 14 O -0.384 6.384 15 C -0.082 4.082 16 C -0.101 4.101 17 C -0.103 4.103 18 C -0.111 4.111 19 C -0.093 4.093 20 C -0.067 4.067 21 N 0.547 4.453 22 O -0.386 6.386 23 O -0.317 6.317 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.233 0.767 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.618 -21.608 0.063 25.541 hybrid contribution 0.599 0.993 -0.004 1.160 sum 14.217 -20.614 0.059 25.042 Atomic orbital electron populations 1.69977 1.06063 1.26656 1.50404 1.25037 0.94862 0.99344 0.95228 0.86521 0.79986 0.83738 0.77647 1.19781 1.20958 1.20984 1.21213 0.92986 0.90887 1.51106 0.92602 1.19036 0.93823 0.90743 0.97823 1.21909 0.99864 0.93177 1.00920 1.21793 0.91698 0.84483 1.02681 1.46077 1.11072 1.05368 1.73641 1.18058 0.88025 0.83156 0.78868 1.90972 1.15253 1.84323 1.47888 1.20019 0.95299 0.91804 1.01029 1.21479 0.90278 1.01174 0.97126 1.21535 1.01097 0.92086 0.95536 1.21380 0.94126 0.98045 0.97510 1.20931 0.92762 0.98499 0.97073 1.21068 0.81797 0.94840 1.08987 1.43281 1.02465 0.99470 1.00038 1.94529 1.72271 1.29142 1.42624 1.94616 1.63040 1.46408 1.27660 0.92909 0.96117 0.96188 0.92679 0.92589 0.90990 0.91287 0.76740 0.83131 0.83309 0.83181 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 12 N -0.71 -9.73 5.51 -61.25 -0.34 -10.07 16 13 C 0.54 8.18 7.64 -12.33 -0.09 8.08 16 14 O -0.51 -10.01 12.98 -19.29 -0.25 -10.26 16 15 C -0.08 -0.90 5.87 -104.97 -0.62 -1.51 16 16 C -0.08 -0.58 9.52 -39.19 -0.37 -0.95 16 17 C -0.08 -0.39 10.03 -39.64 -0.40 -0.78 16 18 C -0.09 -0.44 10.04 -39.49 -0.40 -0.83 16 19 C -0.07 -0.58 9.82 -39.64 -0.39 -0.97 16 20 C 0.02 0.19 6.32 -79.55 -0.50 -0.32 16 21 N 0.02 0.29 3.61 34.16 0.12 0.42 16 22 O -0.18 -2.91 19.14 -29.46 -0.56 -3.47 16 23 O -0.08 -1.48 16.08 -37.25 -0.60 -2.08 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.55 8.14 -51.92 -0.42 0.12 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.40 4.01 6.55 -40.82 -0.27 3.74 16 32 H 0.15 0.71 6.46 -52.49 -0.34 0.37 16 33 H 0.15 0.20 8.06 -52.49 -0.42 -0.22 16 34 H 0.15 0.21 8.06 -52.49 -0.42 -0.21 16 35 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -35.37 313.26 -8.63 -43.99 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -3.95 Total: -3.12 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -3.48 Total: -10.46 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.52 Total: -35.50 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -1.41 Total: -15.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.37 -8.63 -43.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.005 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds