Wall clock time and date at job start Mon Mar 30 2020 23:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00445 * 2 1 4 4 H 1.48499 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46701 * 300.00117 * 3 2 1 6 6 H 1.48499 * 109.46739 * 59.99802 * 3 2 1 7 7 C 1.37879 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47388 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47574 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47247 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99852 * 179.97438 * 12 11 10 14 14 O 1.21553 * 119.99747 * 359.97438 * 13 12 11 15 15 C 1.47846 * 119.99834 * 180.02562 * 13 12 11 16 16 C 1.39593 * 120.14530 * 6.49888 * 15 13 12 17 17 C 1.37933 * 119.85260 * 180.02562 * 16 15 13 18 18 C 1.38390 * 120.14701 * 359.71997 * 17 16 15 19 19 C 1.38342 * 120.28596 * 0.55748 * 18 17 16 20 20 C 1.37974 * 120.14587 * 359.44404 * 19 18 17 21 21 N 1.48019 * 120.07018 * 180.29849 * 20 19 18 22 22 O 1.21802 * 120.00082 * 50.77094 * 21 20 19 23 23 O 1.21802 * 119.99810 * 230.76329 * 21 20 19 24 24 H 0.97005 * 119.99563 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47400 * 59.99807 * 9 7 2 26 26 H 1.08995 * 109.47394 * 299.99889 * 9 7 2 27 27 H 1.08996 * 109.47059 * 59.99849 * 10 9 7 28 28 H 1.09002 * 109.47194 * 299.99807 * 10 9 7 29 29 H 1.08996 * 109.47182 * 59.99763 * 11 10 9 30 30 H 1.09002 * 109.46571 * 300.00027 * 11 10 9 31 31 H 0.96996 * 120.00682 * 359.97438 * 12 11 10 32 32 H 1.07995 * 120.07306 * 359.97438 * 16 15 13 33 33 H 1.08002 * 119.92903 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.85546 * 180.29849 * 18 17 16 35 35 H 1.07999 * 119.92348 * 179.72541 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 -0.0001 12 7 2.4321 -6.1007 0.0005 13 6 1.9827 -7.3714 0.0006 14 8 0.7877 -7.5934 0.0007 15 6 2.9435 -8.4951 0.0018 16 6 4.3105 -8.2486 0.1395 17 6 5.2016 -9.3015 0.1392 18 6 4.7424 -10.6005 0.0088 19 6 3.3894 -10.8512 -0.1337 20 6 2.4876 -9.8070 -0.1351 21 7 1.0397 -10.0777 -0.2811 22 8 0.4994 -10.9031 0.4334 23 8 0.3886 -9.4751 -1.1156 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6045 -0.8895 29 1 0.8537 -5.0446 -0.8903 30 1 0.8532 -5.0451 0.8897 31 1 3.3857 -5.9236 0.0008 32 1 4.6698 -7.2356 0.2450 33 1 6.2596 -9.1121 0.2452 34 1 5.4438 -11.4217 0.0141 35 1 3.0380 -11.8669 -0.2395 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:43 Heat of formation + Delta-G solvation = -40.213802 kcal Electronic energy + Delta-G solvation = -20564.226786 eV Core-core repulsion = 17143.605638 eV Total energy + Delta-G solvation = -3420.621148 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.25830 -41.34975 -39.71072 -37.56691 -37.09932 -35.34558 -33.58359 -33.07807 -32.29606 -28.81922 -27.64860 -25.67667 -24.60448 -23.38861 -22.43367 -21.78329 -20.38480 -19.71772 -18.88902 -18.57445 -18.35151 -17.25022 -16.90382 -16.49876 -16.37330 -15.95372 -15.87596 -15.62165 -14.83461 -14.26923 -14.16422 -13.79806 -13.56200 -13.54451 -12.90421 -12.79977 -12.72672 -12.56742 -12.40728 -12.26198 -12.15598 -11.72089 -11.63258 -11.27904 -11.08803 -10.66194 -10.57388 -10.56777 -10.22694 -8.20103 -6.32039 -1.16937 -0.42738 -0.04452 0.38984 1.42060 1.42322 1.51973 1.55425 1.81922 2.33975 2.41834 3.14074 3.19887 3.27695 3.61523 3.85082 3.88697 4.06612 4.12040 4.14733 4.43742 4.48918 4.65006 4.86511 4.88841 4.93147 5.02423 5.13523 5.15737 5.25536 5.45439 5.50224 5.67775 5.82848 6.19300 6.26892 6.42735 6.86050 6.94393 7.38007 8.92375 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030405 B = 0.003151 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.665168 B = 8884.049685 C = 9708.148831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.022 3.978 10 C -0.099 4.099 11 C 0.129 3.871 12 N -0.695 5.695 13 C 0.529 3.471 14 O -0.565 6.565 15 C -0.107 4.107 16 C -0.071 4.071 17 C -0.062 4.062 18 C -0.067 4.067 19 C -0.075 4.075 20 C -0.017 4.017 21 N 0.021 4.979 22 O -0.180 6.180 23 O -0.150 6.150 24 H 0.263 0.737 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.418 0.582 32 H 0.177 0.823 33 H 0.199 0.801 34 H 0.199 0.801 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.425 -22.488 0.386 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.089 0.911 9 C -0.016 4.016 10 C -0.137 4.137 11 C 0.005 3.995 12 N -0.348 5.348 13 C 0.316 3.684 14 O -0.445 6.445 15 C -0.112 4.112 16 C -0.090 4.090 17 C -0.080 4.080 18 C -0.085 4.085 19 C -0.094 4.094 20 C -0.099 4.099 21 N 0.544 4.456 22 O -0.394 6.394 23 O -0.373 6.373 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.257 0.743 32 H 0.194 0.806 33 H 0.216 0.784 34 H 0.216 0.784 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 19.158 -22.392 0.491 29.473 hybrid contribution -0.962 1.111 -0.086 1.472 sum 18.195 -21.281 0.405 28.002 Atomic orbital electron populations 1.70133 1.08076 1.27748 1.51755 1.26067 0.95733 1.03728 0.94803 0.85336 0.79314 0.78483 0.77516 1.17835 1.20727 1.20724 1.21705 0.93862 0.91788 1.50313 0.91140 1.18958 0.94505 0.93132 0.95022 1.21600 0.98429 0.91091 1.02608 1.21334 0.91904 0.85297 1.00924 1.45733 1.11545 1.04203 1.73280 1.18731 0.88146 0.84194 0.77364 1.90949 1.18007 1.85175 1.50347 1.19817 0.96421 0.89802 1.05124 1.21891 0.88115 1.03606 0.95362 1.22162 1.02887 0.90892 0.92017 1.22014 0.92810 0.99831 0.93887 1.21345 0.93650 0.97909 0.96464 1.21373 0.79041 0.96630 1.12903 1.43903 1.04447 0.98372 0.98925 1.94458 1.73822 1.29093 1.42023 1.94603 1.65110 1.48051 1.29501 0.92850 0.99111 0.99103 0.90755 0.90824 0.93076 0.93161 0.74253 0.80568 0.78358 0.78442 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.41 13.29 21.45 0.28 -57.13 16 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 4 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 11 C 0.13 4.59 5.67 86.38 0.49 5.08 16 12 N -0.69 -18.92 5.51 -465.98 -2.57 -21.49 16 13 C 0.53 16.80 7.64 86.79 0.66 17.46 16 14 O -0.57 -24.25 12.98 19.65 0.25 -23.99 16 15 C -0.11 -2.40 5.87 -20.09 -0.12 -2.52 16 16 C -0.07 -0.70 9.52 22.52 0.21 -0.49 16 17 C -0.06 -0.15 10.03 22.23 0.22 0.07 16 18 C -0.07 -0.23 10.04 22.33 0.22 -0.01 16 19 C -0.07 -0.97 9.82 22.23 0.22 -0.75 16 20 C -0.02 -0.42 6.32 36.63 0.23 -0.19 16 21 N 0.02 0.73 3.61 -45.85 -0.17 0.56 16 22 O -0.18 -6.26 19.14 18.88 0.36 -5.90 16 23 O -0.15 -6.06 16.08 26.33 0.42 -5.63 16 24 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 25 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.42 7.46 6.55 -92.71 -0.61 6.85 16 32 H 0.18 0.74 6.46 -2.91 -0.02 0.72 16 33 H 0.20 -1.28 8.06 -2.91 -0.02 -1.30 16 34 H 0.20 -1.06 8.06 -2.91 -0.02 -1.08 16 35 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -86.04 313.26 4.29 -81.76 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: 0.51 Total: -0.68 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 3.15 Total: -12.82 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.45 Total: -78.05 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: 1.04 Total: -35.53 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -86.04 4.29 -81.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.543 kcal (2) G-P(sol) polarization free energy of solvation -86.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds