Wall clock time and date at job start Tue Mar 31 2020 00:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99726 * 2 1 4 4 H 1.48497 * 109.47030 * 240.00162 * 3 2 1 5 5 H 1.48504 * 109.46985 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46884 * 120.00089 * 3 2 1 7 7 C 1.37873 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47134 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47089 * 179.97438 * 11 10 9 13 13 S 1.65602 * 119.99612 * 164.71987 * 12 11 10 14 14 O 1.42104 * 106.40175 * 178.81816 * 13 12 11 15 15 O 1.42095 * 106.40656 * 311.73868 * 13 12 11 16 16 N 1.65599 * 107.21657 * 65.28266 * 13 12 11 17 17 C 1.47155 * 120.97849 * 269.71263 * 16 13 12 18 18 C 1.53714 * 108.15878 * 129.43457 * 17 16 13 19 19 O 1.42957 * 109.15139 * 52.53827 * 18 17 16 20 20 C 1.42964 * 114.16644 * 297.28980 * 19 18 17 21 21 C 1.47154 * 120.98628 * 89.99800 * 16 13 12 22 22 H 0.97002 * 120.00280 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47146 * 60.00421 * 9 7 2 24 24 H 1.08999 * 109.47619 * 299.99900 * 9 7 2 25 25 H 1.08996 * 109.47038 * 59.99973 * 10 9 7 26 26 H 1.09005 * 109.47040 * 299.99752 * 10 9 7 27 27 H 1.08996 * 109.47377 * 59.99859 * 11 10 9 28 28 H 1.08999 * 109.46886 * 299.99997 * 11 10 9 29 29 H 0.97001 * 120.00384 * 345.00465 * 12 11 10 30 30 H 1.09001 * 109.68137 * 249.21282 * 17 16 13 31 31 H 1.09004 * 109.68217 * 9.76664 * 17 16 13 32 32 H 1.08999 * 109.65663 * 292.56868 * 18 17 16 33 33 H 1.09002 * 109.48190 * 172.40355 * 18 17 16 34 34 H 1.09002 * 109.51324 * 302.65583 * 20 19 18 35 35 H 1.09000 * 109.55754 * 182.52687 * 20 19 18 36 36 H 1.09003 * 109.67967 * 350.23087 * 21 16 13 37 37 H 1.08990 * 109.68175 * 110.74810 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4326 -6.1005 -0.0018 13 16 1.9191 -7.6291 0.3754 14 8 3.0557 -8.4741 0.2598 15 8 1.1551 -7.5130 1.5678 16 7 0.8645 -8.0988 -0.8118 17 6 -0.5780 -7.8340 -0.6918 18 6 -1.0514 -7.1619 -1.9906 19 8 -0.6432 -7.9574 -3.1061 20 6 0.7738 -8.0845 -3.2470 21 6 1.3414 -8.7989 -2.0151 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6042 0.8894 26 1 2.8721 -3.6042 -0.8906 27 1 0.8541 -5.0446 -0.8913 28 1 0.8536 -5.0450 0.8886 29 1 3.3645 -5.9418 -0.2191 30 1 -1.1125 -8.7726 -0.5448 31 1 -0.7604 -7.1708 0.1538 32 1 -0.6105 -6.1684 -2.0711 33 1 -2.1382 -7.0782 -1.9814 34 1 1.2215 -7.0943 -3.3321 35 1 1.0010 -8.6648 -4.1412 36 1 2.4308 -8.7748 -2.0463 37 1 0.9975 -9.8329 -1.9988 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:19 Heat of formation + Delta-G solvation = -132.593810 kcal Electronic energy + Delta-G solvation = -20521.758419 eV Core-core repulsion = 17232.575324 eV Total energy + Delta-G solvation = -3289.183095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.38166 -37.34777 -36.02951 -35.88166 -34.99334 -33.27790 -31.61531 -30.90389 -27.26707 -26.43680 -24.44192 -23.05612 -21.77604 -20.59523 -19.30321 -18.24256 -17.36779 -16.75172 -16.44999 -15.96447 -15.56135 -15.33603 -15.20506 -14.64734 -14.52519 -14.42474 -14.17111 -12.86350 -12.67660 -12.38422 -12.33061 -12.26908 -12.21448 -12.03868 -11.85902 -11.63041 -11.61604 -10.95438 -10.82599 -10.70526 -10.64018 -10.52851 -9.98121 -9.52908 -9.33162 -9.16475 -9.07635 -8.41084 -6.06366 -4.09246 0.51699 2.74663 3.29704 3.34533 3.36699 3.49629 3.61651 4.20994 4.41095 4.46265 4.57794 4.86841 4.94680 4.95287 5.12071 5.26919 5.29751 5.32784 5.38780 5.50680 5.56987 5.68493 5.80343 5.90938 6.01204 6.22063 6.49753 6.69525 6.89009 6.89747 7.10543 7.56742 7.69322 7.91806 8.33686 8.96874 9.55321 11.04868 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.004271 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.484131 B = 6554.506081 C = 7148.432068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.116 4.116 11 C 0.115 3.885 12 N -1.124 6.124 13 S 2.787 3.213 14 O -0.984 6.984 15 O -0.974 6.974 16 N -1.011 6.011 17 C 0.086 3.914 18 C 0.045 3.955 19 O -0.378 6.378 20 C 0.046 3.954 21 C 0.090 3.910 22 H 0.262 0.738 23 H 0.018 0.982 24 H 0.019 0.981 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.415 0.585 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 -17.264 -5.372 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.155 4.155 11 C -0.010 4.010 12 N -0.886 5.886 13 S 2.795 3.205 14 O -0.968 6.968 15 O -0.957 6.957 16 N -0.851 5.851 17 C -0.039 4.039 18 C -0.034 4.034 19 O -0.296 6.296 20 C -0.032 4.032 21 C -0.036 4.036 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.249 0.751 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.069 -17.793 -4.671 18.396 hybrid contribution 0.920 1.413 -0.238 1.703 sum 0.851 -16.381 -4.910 17.122 Atomic orbital electron populations 1.69944 1.06051 1.26851 1.50518 1.25013 0.94861 0.99289 0.95185 0.86640 0.79573 0.83042 0.78625 1.20257 1.21249 1.20225 1.21164 0.93007 0.90941 1.51068 0.92693 1.19067 0.93901 0.91047 0.97538 1.21851 0.99625 0.92766 1.01235 1.21554 0.91323 0.86970 1.01154 1.55914 1.19497 1.25224 1.88007 1.01849 0.72587 0.72750 0.73297 1.93596 1.50503 1.65765 1.86907 1.93616 1.72078 1.86659 1.43360 1.58265 1.18199 1.72231 1.36451 1.22216 0.80005 1.02158 0.99539 1.23111 1.01060 0.94003 0.85177 1.87946 1.21712 1.72103 1.47863 1.22970 0.82061 1.00662 0.97499 1.22059 1.00197 0.96821 0.84500 0.92854 0.96362 0.96224 0.92409 0.92651 0.92468 0.90756 0.75096 0.90207 0.88114 0.91831 0.87494 0.92237 0.87811 0.88517 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.12 -2.17 5.29 -26.73 -0.14 -2.31 16 11 C 0.12 1.76 6.25 -4.04 -0.03 1.74 16 12 N -1.12 -14.68 6.05 -10.61 -0.06 -14.75 16 13 S 2.79 37.55 6.16 -107.50 -0.66 36.89 16 14 O -0.98 -15.03 16.94 -57.17 -0.97 -16.00 16 15 O -0.97 -16.14 16.39 -57.17 -0.94 -17.07 16 16 N -1.01 -11.13 3.39 -112.82 -0.38 -11.51 16 17 C 0.09 0.87 6.60 -3.31 -0.02 0.85 16 18 C 0.04 0.44 7.00 37.53 0.26 0.70 16 19 O -0.38 -4.07 10.74 -35.23 -0.38 -4.45 16 20 C 0.05 0.41 6.98 37.31 0.26 0.67 16 21 C 0.09 0.82 6.57 -3.53 -0.02 0.80 16 22 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.80 7.35 -51.93 -0.38 0.41 16 28 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 29 H 0.42 4.81 8.65 -34.47 -0.30 4.51 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.04 7.24 -51.93 -0.38 0.66 16 32 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.81 7.25 -51.93 -0.38 0.44 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -33.62 316.97 -8.70 -42.32 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.56 Total: -0.73 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.24 Total: -10.24 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.29 Total: -51.65 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -2.28 Total: -37.52 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 37.55 SS G_CDS: -0.66 Total: 36.89 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.62 -8.70 -42.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.277 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds