Wall clock time and date at job start Tue Mar 31 2020 00:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99726 * 2 1 4 4 H 1.48497 * 109.47030 * 240.00162 * 3 2 1 5 5 H 1.48504 * 109.46985 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46884 * 120.00089 * 3 2 1 7 7 C 1.37873 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47134 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47089 * 179.97438 * 11 10 9 13 13 S 1.65602 * 119.99612 * 164.71987 * 12 11 10 14 14 O 1.42104 * 106.40175 * 178.81816 * 13 12 11 15 15 O 1.42095 * 106.40656 * 311.73868 * 13 12 11 16 16 N 1.65599 * 107.21657 * 65.28266 * 13 12 11 17 17 C 1.47155 * 120.97849 * 269.71263 * 16 13 12 18 18 C 1.53714 * 108.15878 * 129.43457 * 17 16 13 19 19 O 1.42957 * 109.15139 * 52.53827 * 18 17 16 20 20 C 1.42964 * 114.16644 * 297.28980 * 19 18 17 21 21 C 1.47154 * 120.98628 * 89.99800 * 16 13 12 22 22 H 0.97002 * 120.00280 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47146 * 60.00421 * 9 7 2 24 24 H 1.08999 * 109.47619 * 299.99900 * 9 7 2 25 25 H 1.08996 * 109.47038 * 59.99973 * 10 9 7 26 26 H 1.09005 * 109.47040 * 299.99752 * 10 9 7 27 27 H 1.08996 * 109.47377 * 59.99859 * 11 10 9 28 28 H 1.08999 * 109.46886 * 299.99997 * 11 10 9 29 29 H 0.97001 * 120.00384 * 345.00465 * 12 11 10 30 30 H 1.09001 * 109.68137 * 249.21282 * 17 16 13 31 31 H 1.09004 * 109.68217 * 9.76664 * 17 16 13 32 32 H 1.08999 * 109.65663 * 292.56868 * 18 17 16 33 33 H 1.09002 * 109.48190 * 172.40355 * 18 17 16 34 34 H 1.09002 * 109.51324 * 302.65583 * 20 19 18 35 35 H 1.09000 * 109.55754 * 182.52687 * 20 19 18 36 36 H 1.09003 * 109.67967 * 350.23087 * 21 16 13 37 37 H 1.08990 * 109.68175 * 110.74810 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4326 -6.1005 -0.0018 13 16 1.9191 -7.6291 0.3754 14 8 3.0557 -8.4741 0.2598 15 8 1.1551 -7.5130 1.5678 16 7 0.8645 -8.0988 -0.8118 17 6 -0.5780 -7.8340 -0.6918 18 6 -1.0514 -7.1619 -1.9906 19 8 -0.6432 -7.9574 -3.1061 20 6 0.7738 -8.0845 -3.2470 21 6 1.3414 -8.7989 -2.0151 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6042 0.8894 26 1 2.8721 -3.6042 -0.8906 27 1 0.8541 -5.0446 -0.8913 28 1 0.8536 -5.0450 0.8886 29 1 3.3645 -5.9418 -0.2191 30 1 -1.1125 -8.7726 -0.5448 31 1 -0.7604 -7.1708 0.1538 32 1 -0.6105 -6.1684 -2.0711 33 1 -2.1382 -7.0782 -1.9814 34 1 1.2215 -7.0943 -3.3321 35 1 1.0010 -8.6648 -4.1412 36 1 2.4308 -8.7748 -2.0463 37 1 0.9975 -9.8329 -1.9988 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:18 Heat of formation + Delta-G solvation = -158.998253 kcal Electronic energy + Delta-G solvation = -20522.903402 eV Core-core repulsion = 17232.575324 eV Total energy + Delta-G solvation = -3290.328077 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15090 -38.52765 -37.40252 -37.07197 -35.82686 -35.16674 -32.64262 -32.35056 -28.22578 -28.05666 -25.20073 -24.77665 -22.66706 -22.14475 -20.33629 -19.24062 -18.60168 -18.41116 -17.57145 -16.96648 -16.52603 -16.42444 -16.28288 -16.03375 -15.94105 -15.45024 -15.13399 -14.30282 -14.11308 -13.79902 -13.71271 -13.38977 -13.32971 -13.23944 -13.13912 -12.77921 -12.76941 -12.54280 -12.36046 -12.32989 -11.74694 -11.47038 -11.42716 -11.34871 -11.15351 -10.52884 -10.48082 -9.90313 -8.18441 -6.28636 -0.55693 1.42319 1.44201 1.52042 1.74043 2.41538 2.44156 2.91922 3.15573 3.18129 3.62463 3.82781 3.99973 4.13428 4.19513 4.20577 4.26886 4.39589 4.45237 4.63217 4.67257 4.69012 4.83952 4.94331 4.98833 5.09577 5.18624 5.20986 5.39156 5.53951 5.75367 5.86830 6.04794 6.16582 6.26302 6.87938 7.40508 8.92912 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.004271 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.484131 B = 6554.506081 C = 7148.432068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.126 3.874 12 N -1.118 6.118 13 S 2.806 3.194 14 O -0.999 6.999 15 O -1.006 7.006 16 N -1.008 6.008 17 C 0.082 3.918 18 C 0.045 3.955 19 O -0.392 6.392 20 C 0.044 3.956 21 C 0.085 3.915 22 H 0.263 0.737 23 H 0.003 0.997 24 H -0.005 1.005 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.423 0.577 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 -17.696 -6.271 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.143 4.143 11 C 0.000 4.000 12 N -0.881 5.881 13 S 2.814 3.186 14 O -0.984 6.984 15 O -0.990 6.990 16 N -0.850 5.850 17 C -0.043 4.043 18 C -0.033 4.033 19 O -0.310 6.310 20 C -0.034 4.034 21 C -0.040 4.040 22 H 0.072 0.928 23 H 0.021 0.979 24 H 0.013 0.987 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.259 0.741 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.771 -18.237 -5.572 19.085 hybrid contribution 0.647 1.495 0.011 1.629 sum 1.418 -16.742 -5.561 17.698 Atomic orbital electron populations 1.70070 1.07642 1.27790 1.51596 1.25908 0.95724 1.03124 0.94824 0.85569 0.78317 0.78485 0.79073 1.19158 1.20990 1.19504 1.21661 0.93583 0.92396 1.50589 0.92184 1.18975 0.94432 0.92551 0.95529 1.21618 0.98545 0.92457 1.01704 1.21289 0.91193 0.85895 1.01643 1.55711 1.19758 1.24542 1.88062 1.01108 0.72100 0.72373 0.72985 1.93571 1.51473 1.66080 1.87229 1.93573 1.72723 1.87018 1.45652 1.58071 1.18246 1.72129 1.36598 1.22354 0.79428 1.02864 0.99658 1.23164 1.02041 0.93375 0.84767 1.87931 1.22836 1.72159 1.48066 1.23132 0.81111 1.00941 0.98221 1.22287 1.00798 0.97277 0.83647 0.92790 0.97906 0.98690 0.92580 0.91485 0.90911 0.91580 0.74101 0.88873 0.88614 0.92684 0.85896 0.92530 0.85415 0.87742 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.84 5.29 30.60 0.16 -3.68 16 11 C 0.13 3.75 6.25 86.38 0.54 4.29 16 12 N -1.12 -27.83 6.05 -187.50 -1.14 -28.97 16 13 S 2.81 72.73 6.16 -56.49 -0.35 72.38 16 14 O -1.00 -29.23 16.94 -128.00 -2.17 -31.40 16 15 O -1.01 -32.93 16.39 -128.00 -2.10 -35.03 16 16 N -1.01 -20.70 3.39 -510.84 -1.73 -22.43 16 17 C 0.08 1.56 6.60 86.49 0.57 2.13 16 18 C 0.04 0.81 7.00 72.22 0.51 1.32 16 19 O -0.39 -7.69 10.74 -148.98 -1.60 -9.29 16 20 C 0.04 0.67 6.98 72.08 0.50 1.18 16 21 C 0.08 1.37 6.57 86.35 0.57 1.94 16 22 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 23 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 24 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 27 H 0.07 1.96 7.35 -2.39 -0.02 1.94 16 28 H 0.07 2.10 7.74 -2.39 -0.02 2.08 16 29 H 0.42 9.13 8.65 -96.74 -0.84 8.29 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 1.92 7.24 -2.38 -0.02 1.90 16 32 H 0.05 1.08 7.35 -2.39 -0.02 1.07 16 33 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.53 7.25 -2.39 -0.02 1.51 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -70.83 316.97 -2.85 -73.68 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.23 Total: 11.06 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 3.69 Total: -20.48 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -2.58 Total: -106.10 kcal Atomic # 8 Polarization: -69.84 SS G_CDS: -5.87 Total: -75.71 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 72.73 SS G_CDS: -0.35 Total: 72.38 kcal Total: -70.83 -2.85 -73.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.319 kcal (2) G-P(sol) polarization free energy of solvation -70.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds