Wall clock time and date at job start Tue Mar 31 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34512 * 125.79015 * 2 1 4 4 C 1.41388 * 106.83795 * 180.11627 * 3 2 1 5 5 C 1.50694 * 126.57739 * 179.83446 * 4 3 2 6 6 C 1.52999 * 110.53391 * 244.89169 * 5 4 3 7 7 N 1.47312 * 110.59979 * 7.72114 * 5 4 3 8 8 C 1.34520 * 106.62166 * 118.52892 * 7 5 4 9 9 O 1.21528 * 123.77298 * 179.97438 * 8 7 5 10 10 N 1.33797 * 112.45704 * 359.97438 * 8 7 5 11 11 C 1.37512 * 124.17523 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00279 * 323.57280 * 11 10 8 13 13 C 1.38900 * 119.99561 * 143.84556 * 11 10 8 14 14 N 1.31390 * 119.99961 * 340.92524 * 13 11 10 15 15 Si 1.86791 * 120.00191 * 160.92498 * 13 11 10 16 16 H 1.48503 * 109.47377 * 59.99650 * 15 13 11 17 17 H 1.48496 * 109.47605 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47186 * 299.99867 * 15 13 11 19 19 C 1.34767 * 111.64372 * 0.23538 * 10 8 7 20 20 O 1.21227 * 127.15935 * 179.73714 * 19 10 8 21 21 C 1.34511 * 106.83975 * 359.56820 * 4 3 2 22 22 C 1.50700 * 125.78848 * 180.29642 * 21 4 3 23 23 O 1.34299 * 108.42462 * 0.26419 * 21 4 3 24 24 H 1.09002 * 109.47343 * 180.34892 * 1 2 3 25 25 H 1.09001 * 109.47112 * 300.34343 * 1 2 3 26 26 H 1.08997 * 109.47192 * 60.34559 * 1 2 3 27 27 H 1.08001 * 126.58167 * 359.94544 * 3 2 1 28 28 H 1.08996 * 109.47144 * 177.10841 * 6 5 4 29 29 H 1.09006 * 109.47153 * 297.10710 * 6 5 4 30 30 H 1.09000 * 109.47597 * 57.10322 * 6 5 4 31 31 H 0.97004 * 126.69140 * 298.48942 * 7 5 4 32 32 H 0.96993 * 119.99923 * 180.02562 * 14 13 11 33 33 H 1.09011 * 109.46841 * 95.00306 * 22 21 4 34 34 H 1.08997 * 109.47733 * 214.99995 * 22 21 4 35 35 H 1.09001 * 109.47178 * 335.00820 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6319 -0.0027 5 6 4.8732 1.4848 -0.0073 6 6 5.6564 1.2853 -1.3064 7 7 4.5276 2.9050 0.1767 8 6 5.1228 3.3014 1.3160 9 8 5.0414 4.4280 1.7642 10 7 5.8146 2.3166 1.9007 11 6 6.5160 2.4571 3.0751 12 1 7.0337 3.3807 3.2878 13 6 6.5633 1.4089 3.9853 14 7 5.6680 0.4489 3.9289 15 14 7.8996 1.3641 5.2897 16 1 7.7998 2.5757 6.1426 17 1 7.7309 0.1514 6.1299 18 1 9.2312 1.3294 4.6331 19 6 5.7438 1.1716 1.1935 20 8 6.2664 0.1113 1.4623 21 6 3.5813 -0.7123 0.0054 22 6 4.7705 -1.6380 0.0124 23 8 2.2924 -1.0895 0.0071 24 1 -0.3634 -1.0276 0.0063 25 1 -0.3633 0.5192 0.8869 26 1 -0.3633 0.5084 -0.8930 27 1 1.9666 2.1204 -0.0008 28 1 6.5225 1.9470 -1.3138 29 1 5.9898 0.2497 -1.3743 30 1 5.0149 1.5169 -2.1567 31 1 3.9784 3.4485 -0.4098 32 1 5.7008 -0.2828 4.5647 33 1 5.0010 -1.9256 1.0383 34 1 4.5408 -2.5290 -0.5718 35 1 5.6298 -1.1288 -0.4240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072066029.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:51 Heat of formation + Delta-G solvation = -22.499916 kcal Electronic energy + Delta-G solvation = -22783.549925 eV Core-core repulsion = 19363.696908 eV Total energy + Delta-G solvation = -3419.853017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.44722 -41.01898 -37.14235 -35.60359 -34.32105 -32.73324 -32.63420 -31.36636 -29.49617 -29.20375 -25.81767 -24.74142 -23.40811 -21.73336 -20.86820 -20.58868 -18.67713 -17.52603 -16.41717 -16.04770 -16.01529 -15.39890 -15.05078 -14.53284 -14.47600 -13.80915 -13.71242 -13.30869 -13.16958 -13.05552 -12.73379 -12.68348 -12.36043 -12.21335 -12.12853 -11.83940 -11.64272 -11.37043 -11.14085 -11.00100 -10.81281 -10.41844 -9.63255 -9.45793 -9.20721 -8.75283 -8.63793 -7.96245 -7.75811 -6.39942 -4.18191 2.03552 2.76636 3.06772 3.23659 3.24065 3.27619 3.29338 3.59184 4.16862 4.43247 4.55644 4.84232 5.00984 5.15002 5.21664 5.34300 5.37861 5.41997 5.49981 5.64484 5.75181 5.80813 5.86832 6.07652 6.11059 6.26298 6.32494 6.39197 6.66331 6.71713 6.86709 7.46192 7.50499 7.66942 7.99729 8.24696 8.74962 9.05473 9.21164 9.82545 10.69691 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.007275 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.708807 B = 3847.961549 C = 4241.042985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.033 4.033 3 C -0.184 4.184 4 C -0.175 4.175 5 C 0.190 3.810 6 C -0.141 4.141 7 N -0.735 5.735 8 C 0.679 3.321 9 O -0.571 6.571 10 N -0.406 5.406 11 C -0.354 4.354 12 H 0.101 0.899 13 C 0.061 3.939 14 N -0.829 5.829 15 Si 0.931 3.069 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.509 3.491 20 O -0.461 6.461 21 C 0.023 3.977 22 C -0.071 4.071 23 O -0.175 6.175 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.421 0.579 32 H 0.272 0.728 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 -3.730 -10.550 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.203 4.203 4 C -0.177 4.177 5 C 0.098 3.902 6 C -0.199 4.199 7 N -0.399 5.399 8 C 0.383 3.617 9 O -0.449 6.449 10 N -0.137 5.137 11 C -0.479 4.479 12 H 0.119 0.881 13 C -0.150 4.150 14 N -0.461 5.461 15 Si 0.756 3.244 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.195 1.195 19 C 0.295 3.705 20 O -0.332 6.332 21 C -0.028 4.028 22 C -0.127 4.127 23 O -0.072 6.072 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.161 0.839 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.262 0.738 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.869 -4.203 -9.938 12.283 hybrid contribution 0.074 0.433 0.487 0.656 sum -5.794 -3.770 -9.451 11.710 Atomic orbital electron populations 1.20206 0.85434 1.03493 1.03181 1.22179 0.93730 0.84144 1.08217 1.21198 0.91677 0.99228 1.08190 1.19722 0.94130 0.92939 1.10935 1.19541 0.91917 0.81390 0.97385 1.21984 0.99880 1.03351 0.94670 1.45513 1.56382 1.10949 1.27090 1.16463 0.78730 0.85763 0.80764 1.90808 1.66381 1.19706 1.68002 1.41747 1.41258 1.09757 1.20977 1.19267 1.30198 1.03829 0.94620 0.88137 1.25349 0.96561 0.95673 0.97436 1.69908 1.30223 1.10748 1.35219 0.85969 0.81067 0.77721 0.79655 1.19677 1.20796 1.19494 1.20018 0.82302 0.85297 0.82914 1.90545 1.47229 1.24750 1.70690 1.22186 0.83022 0.94026 1.03568 1.20533 0.90957 0.96553 1.04628 1.83938 1.16295 1.34882 1.72132 0.90947 0.90010 0.90125 0.83871 0.91366 0.90375 0.91436 0.73765 0.91757 0.88824 0.91867 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 36.01 0.38 -0.34 16 2 C -0.03 -0.53 7.32 -35.63 -0.26 -0.79 16 3 C -0.18 -3.13 10.18 -39.70 -0.40 -3.53 16 4 C -0.17 -3.29 4.90 -104.74 -0.51 -3.81 16 5 C 0.19 3.68 1.01 -133.25 -0.13 3.54 16 6 C -0.14 -2.14 8.83 37.16 0.33 -1.81 16 7 N -0.74 -14.32 5.36 -54.03 -0.29 -14.61 16 8 C 0.68 17.00 8.57 -88.02 -0.75 16.24 16 9 O -0.57 -15.75 17.62 5.34 0.09 -15.66 16 10 N -0.41 -10.93 2.67 -65.57 -0.18 -11.10 16 11 C -0.35 -10.13 9.43 -14.76 -0.14 -10.27 16 12 H 0.10 2.86 7.90 -52.49 -0.41 2.44 16 13 C 0.06 1.70 4.82 -17.50 -0.08 1.61 16 14 N -0.83 -23.83 11.47 55.49 0.64 -23.20 16 15 Si 0.93 21.32 29.59 -169.99 -5.03 16.29 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.51 12.48 6.00 -10.55 -0.06 12.42 16 20 O -0.46 -11.91 12.55 5.60 0.07 -11.84 16 21 C 0.02 0.42 7.20 -35.63 -0.26 0.16 16 22 C -0.07 -1.16 8.58 36.01 0.31 -0.85 16 23 O -0.18 -3.07 10.65 5.70 0.06 -3.01 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.14 2.20 8.00 -52.49 -0.42 1.78 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.12 5.70 -51.93 -0.30 0.82 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.42 6.67 8.96 -40.82 -0.37 6.30 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 33 H 0.09 1.76 7.61 -51.92 -0.40 1.36 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.54 4.45 -51.93 -0.23 1.31 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -34.36 298.28 -5.53 -39.90 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.79 Total: 6.16 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: -1.60 Total: 12.58 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.17 Total: -48.91 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: 0.23 Total: -30.51 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.36 -5.53 -39.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072066029.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.395 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds