Wall clock time and date at job start Tue Mar 31 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34512 * 125.79015 * 2 1 4 4 C 1.41388 * 106.83795 * 180.11627 * 3 2 1 5 5 C 1.50694 * 126.57739 * 179.83446 * 4 3 2 6 6 C 1.52999 * 110.53391 * 244.89169 * 5 4 3 7 7 N 1.47312 * 110.59979 * 7.72114 * 5 4 3 8 8 C 1.34520 * 106.62166 * 118.52892 * 7 5 4 9 9 O 1.21528 * 123.77298 * 179.97438 * 8 7 5 10 10 N 1.33797 * 112.45704 * 359.97438 * 8 7 5 11 11 C 1.37512 * 124.17523 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00279 * 323.57280 * 11 10 8 13 13 C 1.38900 * 119.99561 * 143.84556 * 11 10 8 14 14 N 1.31390 * 119.99961 * 340.92524 * 13 11 10 15 15 Si 1.86791 * 120.00191 * 160.92498 * 13 11 10 16 16 H 1.48503 * 109.47377 * 59.99650 * 15 13 11 17 17 H 1.48496 * 109.47605 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47186 * 299.99867 * 15 13 11 19 19 C 1.34767 * 111.64372 * 0.23538 * 10 8 7 20 20 O 1.21227 * 127.15935 * 179.73714 * 19 10 8 21 21 C 1.34511 * 106.83975 * 359.56820 * 4 3 2 22 22 C 1.50700 * 125.78848 * 180.29642 * 21 4 3 23 23 O 1.34299 * 108.42462 * 0.26419 * 21 4 3 24 24 H 1.09002 * 109.47343 * 180.34892 * 1 2 3 25 25 H 1.09001 * 109.47112 * 300.34343 * 1 2 3 26 26 H 1.08997 * 109.47192 * 60.34559 * 1 2 3 27 27 H 1.08001 * 126.58167 * 359.94544 * 3 2 1 28 28 H 1.08996 * 109.47144 * 177.10841 * 6 5 4 29 29 H 1.09006 * 109.47153 * 297.10710 * 6 5 4 30 30 H 1.09000 * 109.47597 * 57.10322 * 6 5 4 31 31 H 0.97004 * 126.69140 * 298.48942 * 7 5 4 32 32 H 0.96993 * 119.99923 * 180.02562 * 14 13 11 33 33 H 1.09011 * 109.46841 * 95.00306 * 22 21 4 34 34 H 1.08997 * 109.47733 * 214.99995 * 22 21 4 35 35 H 1.09001 * 109.47178 * 335.00820 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6319 -0.0027 5 6 4.8732 1.4848 -0.0073 6 6 5.6564 1.2853 -1.3064 7 7 4.5276 2.9050 0.1767 8 6 5.1228 3.3014 1.3160 9 8 5.0414 4.4280 1.7642 10 7 5.8146 2.3166 1.9007 11 6 6.5160 2.4571 3.0751 12 1 7.0337 3.3807 3.2878 13 6 6.5633 1.4089 3.9853 14 7 5.6680 0.4489 3.9289 15 14 7.8996 1.3641 5.2897 16 1 7.7998 2.5757 6.1426 17 1 7.7309 0.1514 6.1299 18 1 9.2312 1.3294 4.6331 19 6 5.7438 1.1716 1.1935 20 8 6.2664 0.1113 1.4623 21 6 3.5813 -0.7123 0.0054 22 6 4.7705 -1.6380 0.0124 23 8 2.2924 -1.0895 0.0071 24 1 -0.3634 -1.0276 0.0063 25 1 -0.3633 0.5192 0.8869 26 1 -0.3633 0.5084 -0.8930 27 1 1.9666 2.1204 -0.0008 28 1 6.5225 1.9470 -1.3138 29 1 5.9898 0.2497 -1.3743 30 1 5.0149 1.5169 -2.1567 31 1 3.9784 3.4485 -0.4098 32 1 5.7008 -0.2828 4.5647 33 1 5.0010 -1.9256 1.0383 34 1 4.5408 -2.5290 -0.5718 35 1 5.6298 -1.1288 -0.4240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072066029.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:50 Heat of formation + Delta-G solvation = -46.651078 kcal Electronic energy + Delta-G solvation = -22784.597198 eV Core-core repulsion = 19363.696908 eV Total energy + Delta-G solvation = -3420.900290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.84588 -42.79842 -39.09457 -37.34904 -36.31275 -34.36358 -33.89883 -33.23920 -30.89399 -30.36850 -27.81894 -26.10911 -24.92934 -23.38819 -22.65979 -22.10497 -20.20452 -19.45385 -18.13082 -17.72342 -17.40608 -17.09083 -16.90253 -16.37771 -16.13307 -15.69673 -15.27718 -14.74613 -14.55816 -14.32251 -14.15285 -13.97674 -13.69801 -13.62070 -13.46946 -13.30264 -13.15768 -12.96359 -12.83784 -12.55103 -12.48277 -12.19326 -11.56430 -11.24414 -10.99161 -10.54797 -10.33479 -9.98032 -9.09706 -8.49739 -6.36107 0.71151 1.07262 1.36681 1.43651 1.50120 1.54121 1.85445 1.98604 2.32247 2.46762 2.79457 3.09039 3.41473 3.54942 3.84200 3.96883 4.09750 4.34096 4.45806 4.56774 4.66146 4.71199 4.74526 4.79795 4.85148 4.94338 5.01869 5.07783 5.18052 5.31781 5.44133 5.55525 5.87264 6.02415 6.18621 6.33230 6.69717 7.14889 7.18089 7.82468 8.59995 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.007275 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.708807 B = 3847.961549 C = 4241.042985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.024 4.024 3 C -0.208 4.208 4 C -0.194 4.194 5 C 0.201 3.799 6 C -0.136 4.136 7 N -0.708 5.708 8 C 0.672 3.328 9 O -0.608 6.608 10 N -0.430 5.430 11 C -0.387 4.387 12 H 0.089 0.911 13 C 0.019 3.981 14 N -0.861 5.861 15 Si 0.998 3.002 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.263 1.263 19 C 0.498 3.502 20 O -0.481 6.481 21 C 0.007 3.993 22 C -0.066 4.066 23 O -0.182 6.182 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.156 0.844 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.440 0.560 32 H 0.274 0.726 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.979 -4.335 -11.816 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.227 4.227 4 C -0.197 4.197 5 C 0.110 3.890 6 C -0.194 4.194 7 N -0.373 5.373 8 C 0.375 3.625 9 O -0.488 6.488 10 N -0.163 5.163 11 C -0.513 4.513 12 H 0.107 0.893 13 C -0.189 4.189 14 N -0.493 5.493 15 Si 0.819 3.181 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.188 1.188 19 C 0.286 3.714 20 O -0.353 6.353 21 C -0.044 4.044 22 C -0.122 4.122 23 O -0.079 6.079 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.127 0.873 27 H 0.174 0.826 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.286 0.714 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.854 -4.816 -11.261 14.035 hybrid contribution 0.281 0.607 0.839 1.073 sum -6.573 -4.210 -10.421 13.020 Atomic orbital electron populations 1.20460 0.81824 1.05003 1.04964 1.23098 0.95641 0.83199 1.05378 1.21430 0.91117 1.00431 1.09688 1.19816 0.94452 0.93320 1.12082 1.19530 0.91919 0.80819 0.96749 1.22041 0.99990 1.04128 0.93251 1.45283 1.55284 1.11278 1.25422 1.16603 0.78980 0.85064 0.81872 1.90764 1.67797 1.20916 1.69344 1.42054 1.41911 1.11079 1.21250 1.19459 1.31439 1.04162 0.96250 0.89309 1.26306 0.98440 0.94840 0.99348 1.69998 1.31707 1.11322 1.36306 0.84965 0.78023 0.78218 0.76905 1.18728 1.19801 1.18802 1.20844 0.82269 0.84302 0.83987 1.90513 1.48019 1.25124 1.71666 1.22427 0.83753 0.94204 1.03986 1.20479 0.90604 0.97785 1.03308 1.83957 1.16168 1.35710 1.72113 0.89598 0.89106 0.87269 0.82589 0.91283 0.89401 0.87978 0.71428 0.91680 0.91793 0.88538 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.42 71.24 0.74 -0.45 16 2 C -0.02 -0.69 7.32 24.83 0.18 -0.51 16 3 C -0.21 -6.68 10.18 22.19 0.23 -6.46 16 4 C -0.19 -7.09 4.90 -19.94 -0.10 -7.18 16 5 C 0.20 7.62 1.01 2.24 0.00 7.62 16 6 C -0.14 -3.86 8.83 71.98 0.64 -3.23 16 7 N -0.71 -26.99 5.36 -443.28 -2.38 -29.37 16 8 C 0.67 34.12 8.57 179.44 1.54 35.65 16 9 O -0.61 -34.26 17.62 -3.80 -0.07 -34.33 16 10 N -0.43 -23.75 2.67 -598.61 -1.60 -25.35 16 11 C -0.39 -22.89 9.43 83.96 0.79 -22.10 16 12 H 0.09 5.26 7.90 -2.91 -0.02 5.24 16 13 C 0.02 1.05 4.82 84.92 0.41 1.46 16 14 N -0.86 -50.56 11.47 21.65 0.25 -50.31 16 15 Si 1.00 44.23 29.59 68.60 2.03 46.26 16 16 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 19 C 0.50 24.76 6.00 87.94 0.53 25.29 16 20 O -0.48 -25.38 12.55 -2.87 -0.04 -25.41 16 21 C 0.01 0.25 7.20 24.83 0.18 0.43 16 22 C -0.07 -2.12 8.58 71.24 0.61 -1.51 16 23 O -0.18 -6.08 10.65 -2.50 -0.03 -6.10 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.16 4.47 8.00 -2.91 -0.02 4.44 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 2.35 5.70 -2.38 -0.01 2.34 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.44 13.20 8.96 -92.71 -0.83 12.37 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.06 2.45 7.61 -2.38 -0.02 2.43 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.10 3.03 4.45 -2.39 -0.01 3.02 16 Total: -1.00 -76.84 298.28 4.23 -72.61 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.31 Total: 22.99 kcal Atomic # 6 Polarization: 23.27 SS G_CDS: 5.75 Total: 29.01 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -3.73 Total: -105.03 kcal Atomic # 8 Polarization: -65.71 SS G_CDS: -0.13 Total: -65.84 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -76.84 4.23 -72.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072066029.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.956 kcal (2) G-P(sol) polarization free energy of solvation -76.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds