Wall clock time and date at job start Tue Mar 31 2020 01:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34515 * 125.78742 * 2 1 4 4 C 1.41378 * 106.83820 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.57923 * 179.97438 * 4 3 2 6 6 C 1.52994 * 110.53785 * 1.36695 * 5 4 3 7 7 N 1.47313 * 110.60169 * 238.53763 * 5 4 3 8 8 C 1.34864 * 106.44256 * 241.52151 * 7 5 4 9 9 O 1.21521 * 123.73019 * 179.97438 * 8 7 5 10 10 N 1.33791 * 112.49932 * 359.86291 * 8 7 5 11 11 C 1.37514 * 124.17980 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00222 * 213.43139 * 11 10 8 13 13 C 1.38897 * 119.99648 * 33.42875 * 11 10 8 14 14 N 1.31384 * 120.00369 * 24.39586 * 13 11 10 15 15 Si 1.86800 * 119.99649 * 204.39994 * 13 11 10 16 16 H 1.48500 * 109.47268 * 94.97860 * 15 13 11 17 17 H 1.48501 * 109.47120 * 214.97929 * 15 13 11 18 18 H 1.48500 * 109.47495 * 334.97697 * 15 13 11 19 19 C 1.34766 * 111.64668 * 0.09080 * 10 8 7 20 20 O 1.21230 * 127.15908 * 179.97438 * 19 10 8 21 21 C 1.34516 * 106.84568 * 0.02562 * 4 3 2 22 22 C 1.50702 * 125.79456 * 180.02562 * 21 4 3 23 23 O 1.34302 * 125.79048 * 179.69067 * 2 1 3 24 24 H 1.09006 * 109.46853 * 90.00016 * 1 2 3 25 25 H 1.09000 * 109.47152 * 330.00047 * 1 2 3 26 26 H 1.08996 * 109.47272 * 209.99507 * 1 2 3 27 27 H 1.07998 * 126.58301 * 0.04420 * 3 2 1 28 28 H 1.09007 * 109.46774 * 59.99735 * 6 5 4 29 29 H 1.08996 * 109.47933 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47488 * 300.00600 * 6 5 4 31 31 H 0.97002 * 126.68950 * 61.44211 * 7 5 4 32 32 H 0.96994 * 120.00010 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.47188 * 84.19608 * 22 21 4 34 34 H 1.08995 * 109.46774 * 204.19458 * 22 21 4 35 35 H 1.08998 * 109.46953 * 324.19295 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0006 5 6 4.8731 1.4850 0.0003 6 6 4.5050 2.9696 0.0334 7 7 5.7081 1.1843 -1.1755 8 6 6.8850 0.7275 -0.7012 9 8 7.8107 0.3844 -1.4098 10 7 6.9208 0.6964 0.6359 11 6 8.0036 0.2728 1.3701 12 1 7.8527 -0.2334 2.3120 13 6 9.2915 0.4961 0.9002 14 7 9.5231 1.4795 0.0603 15 14 10.6941 -0.6021 1.4622 16 1 10.9008 -1.6878 0.4703 17 1 11.9362 0.2031 1.5807 18 1 10.3606 -1.1947 2.7823 19 6 5.7640 1.1302 1.1743 20 8 5.4922 1.2179 2.3525 21 6 3.5814 -0.7122 0.0004 22 6 4.7706 -1.6379 0.0014 23 8 2.2924 -1.0894 0.0059 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5137 27 1 1.9665 2.1204 0.0007 28 1 3.9306 3.1815 0.9353 29 1 5.4148 3.5698 0.0331 30 1 3.9069 3.2154 -0.8442 31 1 5.4585 1.2928 -2.1066 32 1 10.4224 1.6352 -0.2681 33 1 5.1202 -1.7792 1.0241 34 1 4.4819 -2.6006 -0.4202 35 1 5.5698 -1.2033 -0.5990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072066030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:54 Heat of formation + Delta-G solvation = -19.773438 kcal Electronic energy + Delta-G solvation = -22698.079300 eV Core-core repulsion = 19278.344512 eV Total energy + Delta-G solvation = -3419.734788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61730 -41.07442 -37.12671 -35.65084 -34.19048 -33.03608 -32.56533 -31.45243 -30.03478 -28.78910 -25.87170 -24.96007 -23.37898 -21.78342 -21.00408 -20.44781 -18.96944 -17.35771 -16.61491 -16.32065 -16.11388 -15.43273 -14.84855 -14.57218 -14.42640 -13.83600 -13.70186 -13.50939 -13.32231 -13.08020 -12.84487 -12.70090 -12.44785 -12.25808 -12.07152 -11.95646 -11.70878 -11.52485 -11.21684 -11.07468 -10.79027 -10.40331 -9.89495 -9.43520 -9.16580 -8.77984 -8.57719 -8.02938 -7.94509 -6.44324 -4.17137 1.85934 2.60982 2.82799 3.04839 3.23445 3.30347 3.32249 3.76200 4.10493 4.46892 4.54141 4.76287 4.85511 5.03967 5.15480 5.25998 5.30133 5.37055 5.44804 5.50676 5.64723 5.82022 5.85589 5.96131 6.05772 6.07821 6.17372 6.39935 6.46139 6.59531 6.74333 7.34644 7.44896 7.79763 7.93876 8.13550 8.76942 8.97413 9.22638 9.85620 10.65377 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029916 B = 0.006028 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.714462 B = 4644.212335 C = 4834.382477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.031 4.031 3 C -0.184 4.184 4 C -0.174 4.174 5 C 0.191 3.809 6 C -0.135 4.135 7 N -0.743 5.743 8 C 0.685 3.315 9 O -0.523 6.523 10 N -0.397 5.397 11 C -0.371 4.371 12 H 0.105 0.895 13 C 0.072 3.928 14 N -0.815 5.815 15 Si 0.923 3.077 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.489 3.511 20 O -0.508 6.508 21 C 0.019 3.981 22 C -0.082 4.082 23 O -0.174 6.174 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.149 0.851 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.422 0.578 32 H 0.273 0.727 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 -0.864 -2.843 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.204 4.204 4 C -0.176 4.176 5 C 0.100 3.900 6 C -0.194 4.194 7 N -0.410 5.410 8 C 0.388 3.612 9 O -0.395 6.395 10 N -0.128 5.128 11 C -0.496 4.496 12 H 0.123 0.877 13 C -0.141 4.141 14 N -0.446 5.446 15 Si 0.748 3.252 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.191 1.191 19 C 0.277 3.723 20 O -0.384 6.384 21 C -0.032 4.032 22 C -0.139 4.139 23 O -0.071 6.071 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.167 0.833 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.640 -1.225 -2.647 13.948 hybrid contribution 0.610 -0.041 -0.316 0.689 sum -13.029 -1.267 -2.963 13.422 Atomic orbital electron populations 1.20223 0.85276 1.03787 1.03092 1.22250 0.93790 0.84160 1.07873 1.21324 0.91467 0.99368 1.08239 1.19812 0.94244 0.92848 1.10727 1.19401 0.88344 0.95422 0.86858 1.21844 1.02563 0.92196 1.02782 1.45807 1.14960 1.72722 1.07467 1.16125 0.82308 0.79513 0.83248 1.90842 1.37041 1.51640 1.59960 1.41798 1.13900 1.51859 1.05275 1.19270 0.82122 1.41067 1.07127 0.87703 1.25273 0.98756 0.94558 0.95542 1.69935 1.22684 1.23778 1.28165 0.86013 0.79710 0.80257 0.79169 1.19905 1.20848 1.19121 1.20457 0.84352 0.78766 0.88772 1.90581 1.77797 1.53913 1.16088 1.22274 0.82981 0.94283 1.03623 1.20516 0.91380 0.97486 1.04493 1.83946 1.16198 1.34994 1.71973 0.90477 0.89535 0.90841 0.83334 0.90658 0.91263 0.91428 0.73627 0.91731 0.89462 0.90631 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.42 36.01 0.38 -0.21 16 2 C -0.03 -0.43 7.32 -35.62 -0.26 -0.69 16 3 C -0.18 -2.68 9.85 -39.70 -0.39 -3.07 16 4 C -0.17 -3.05 5.15 -104.75 -0.54 -3.59 16 5 C 0.19 3.68 1.09 -133.25 -0.15 3.53 16 6 C -0.14 -2.18 7.98 37.15 0.30 -1.88 16 7 N -0.74 -14.61 5.39 -53.93 -0.29 -14.90 16 8 C 0.68 17.06 5.93 -87.72 -0.52 16.54 16 9 O -0.52 -14.71 15.21 5.35 0.08 -14.63 16 10 N -0.40 -10.37 2.58 -65.48 -0.17 -10.54 16 11 C -0.37 -10.38 9.54 -14.76 -0.14 -10.52 16 12 H 0.11 2.89 7.94 -52.49 -0.42 2.48 16 13 C 0.07 1.99 4.56 -17.50 -0.08 1.91 16 14 N -0.82 -23.52 11.51 55.49 0.64 -22.88 16 15 Si 0.92 21.12 29.62 -169.99 -5.03 16.08 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 C 0.49 11.78 5.96 -10.55 -0.06 11.72 16 20 O -0.51 -13.31 17.81 5.60 0.10 -13.21 16 21 C 0.02 0.34 7.23 -35.62 -0.26 0.08 16 22 C -0.08 -1.43 9.30 36.01 0.33 -1.10 16 23 O -0.17 -2.80 10.65 5.71 0.06 -2.74 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.15 1.76 7.67 -52.49 -0.40 1.36 16 28 H 0.07 1.15 8.11 -51.92 -0.42 0.73 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 31 H 0.42 7.00 8.96 -40.82 -0.37 6.64 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.83 5.13 -51.93 -0.27 1.57 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -34.02 301.46 -5.43 -39.45 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.96 Total: 6.11 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.39 Total: 12.73 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.18 Total: -48.33 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: 0.24 Total: -30.58 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.02 -5.43 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072066030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.677 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds