Wall clock time and date at job start Tue Mar 31 2020 01:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34515 * 125.78742 * 2 1 4 4 C 1.41378 * 106.83820 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.57923 * 179.97438 * 4 3 2 6 6 C 1.52994 * 110.53785 * 1.36695 * 5 4 3 7 7 N 1.47313 * 110.60169 * 238.53763 * 5 4 3 8 8 C 1.34864 * 106.44256 * 241.52151 * 7 5 4 9 9 O 1.21521 * 123.73019 * 179.97438 * 8 7 5 10 10 N 1.33791 * 112.49932 * 359.86291 * 8 7 5 11 11 C 1.37514 * 124.17980 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00222 * 213.43139 * 11 10 8 13 13 C 1.38897 * 119.99648 * 33.42875 * 11 10 8 14 14 N 1.31384 * 120.00369 * 24.39586 * 13 11 10 15 15 Si 1.86800 * 119.99649 * 204.39994 * 13 11 10 16 16 H 1.48500 * 109.47268 * 94.97860 * 15 13 11 17 17 H 1.48501 * 109.47120 * 214.97929 * 15 13 11 18 18 H 1.48500 * 109.47495 * 334.97697 * 15 13 11 19 19 C 1.34766 * 111.64668 * 0.09080 * 10 8 7 20 20 O 1.21230 * 127.15908 * 179.97438 * 19 10 8 21 21 C 1.34516 * 106.84568 * 0.02562 * 4 3 2 22 22 C 1.50702 * 125.79456 * 180.02562 * 21 4 3 23 23 O 1.34302 * 125.79048 * 179.69067 * 2 1 3 24 24 H 1.09006 * 109.46853 * 90.00016 * 1 2 3 25 25 H 1.09000 * 109.47152 * 330.00047 * 1 2 3 26 26 H 1.08996 * 109.47272 * 209.99507 * 1 2 3 27 27 H 1.07998 * 126.58301 * 0.04420 * 3 2 1 28 28 H 1.09007 * 109.46774 * 59.99735 * 6 5 4 29 29 H 1.08996 * 109.47933 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47488 * 300.00600 * 6 5 4 31 31 H 0.97002 * 126.68950 * 61.44211 * 7 5 4 32 32 H 0.96994 * 120.00010 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.47188 * 84.19608 * 22 21 4 34 34 H 1.08995 * 109.46774 * 204.19458 * 22 21 4 35 35 H 1.08998 * 109.46953 * 324.19295 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0006 5 6 4.8731 1.4850 0.0003 6 6 4.5050 2.9696 0.0334 7 7 5.7081 1.1843 -1.1755 8 6 6.8850 0.7275 -0.7012 9 8 7.8107 0.3844 -1.4098 10 7 6.9208 0.6964 0.6359 11 6 8.0036 0.2728 1.3701 12 1 7.8527 -0.2334 2.3120 13 6 9.2915 0.4961 0.9002 14 7 9.5231 1.4795 0.0603 15 14 10.6941 -0.6021 1.4622 16 1 10.9008 -1.6878 0.4703 17 1 11.9362 0.2031 1.5807 18 1 10.3606 -1.1947 2.7823 19 6 5.7640 1.1302 1.1743 20 8 5.4922 1.2179 2.3525 21 6 3.5814 -0.7122 0.0004 22 6 4.7706 -1.6379 0.0014 23 8 2.2924 -1.0894 0.0059 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5137 27 1 1.9665 2.1204 0.0007 28 1 3.9306 3.1815 0.9353 29 1 5.4148 3.5698 0.0331 30 1 3.9069 3.2154 -0.8442 31 1 5.4585 1.2928 -2.1066 32 1 10.4224 1.6352 -0.2681 33 1 5.1202 -1.7792 1.0241 34 1 4.4819 -2.6006 -0.4202 35 1 5.5698 -1.2033 -0.5990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072066030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:54 Heat of formation + Delta-G solvation = -44.346584 kcal Electronic energy + Delta-G solvation = -22699.144872 eV Core-core repulsion = 19278.344512 eV Total energy + Delta-G solvation = -3420.800359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.93256 -42.82386 -39.11031 -37.39152 -36.20878 -34.48100 -33.84842 -33.23423 -31.42910 -29.96726 -27.85857 -26.29192 -24.82404 -23.56424 -22.69789 -21.76533 -20.50859 -19.28212 -18.51632 -17.69115 -17.35961 -17.16145 -16.58670 -16.46189 -16.21306 -15.69670 -15.27664 -14.86177 -14.68030 -14.32423 -14.19140 -14.00964 -13.67220 -13.65327 -13.47672 -13.34664 -13.11740 -13.04993 -12.92160 -12.75159 -12.44614 -12.17620 -11.65321 -11.30241 -10.92523 -10.56893 -10.27559 -10.09502 -9.18544 -8.52996 -6.33097 0.61141 0.92484 1.33326 1.41599 1.44683 1.54113 1.88600 2.02765 2.33209 2.53036 2.68727 3.12187 3.36991 3.63060 3.70318 3.78658 4.14340 4.27829 4.39519 4.43201 4.63769 4.65594 4.69066 4.78147 4.81796 4.88321 4.97762 4.99836 5.16532 5.24823 5.31302 5.58700 5.88580 6.11559 6.15198 6.17733 6.74175 7.04512 7.19093 7.88087 8.57639 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029916 B = 0.006028 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.714462 B = 4644.212335 C = 4834.382477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.020 4.020 3 C -0.193 4.193 4 C -0.185 4.185 5 C 0.202 3.798 6 C -0.132 4.132 7 N -0.720 5.720 8 C 0.684 3.316 9 O -0.564 6.564 10 N -0.415 5.415 11 C -0.401 4.401 12 H 0.096 0.904 13 C 0.028 3.972 14 N -0.850 5.850 15 Si 0.990 3.010 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.255 1.255 19 C 0.481 3.519 20 O -0.538 6.538 21 C -0.005 4.005 22 C -0.078 4.078 23 O -0.181 6.181 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.180 0.820 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.439 0.561 32 H 0.275 0.725 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.643 -0.543 -3.311 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 C -0.212 4.212 4 C -0.188 4.188 5 C 0.111 3.889 6 C -0.190 4.190 7 N -0.387 5.387 8 C 0.387 3.613 9 O -0.439 6.439 10 N -0.146 5.146 11 C -0.525 4.525 12 H 0.113 0.887 13 C -0.182 4.182 14 N -0.482 5.482 15 Si 0.812 3.188 16 H -0.200 1.200 17 H -0.196 1.196 18 H -0.178 1.178 19 C 0.270 3.730 20 O -0.416 6.416 21 C -0.056 4.056 22 C -0.134 4.134 23 O -0.078 6.078 24 H 0.117 0.883 25 H 0.129 0.871 26 H 0.100 0.900 27 H 0.197 0.803 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.284 0.716 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.132 -0.883 -3.125 16.455 hybrid contribution 1.204 -0.140 -0.142 1.220 sum -14.928 -1.023 -3.267 15.315 Atomic orbital electron populations 1.20506 0.81462 1.05387 1.04968 1.23268 0.95711 0.83114 1.04835 1.21627 0.89664 1.01235 1.08702 1.19825 0.94702 0.92732 1.11551 1.19395 0.87775 0.97947 0.83788 1.21909 1.02657 0.89001 1.05404 1.45596 1.13306 1.71229 1.08609 1.16199 0.83069 0.79282 0.82722 1.90792 1.38896 1.53614 1.60603 1.41972 1.14277 1.52402 1.05940 1.19445 0.83470 1.42019 1.07610 0.88664 1.26228 1.01039 0.95436 0.95450 1.70004 1.23331 1.25221 1.29620 0.85011 0.76560 0.78207 0.79050 1.19966 1.19575 1.17846 1.21257 0.84502 0.77449 0.89752 1.90539 1.78414 1.54913 1.17704 1.22212 0.83674 0.94431 1.05305 1.20349 0.91178 0.98921 1.02963 1.83956 1.15649 1.36204 1.71984 0.88293 0.87148 0.90030 0.80259 0.89503 0.92849 0.87217 0.71636 0.91598 0.91408 0.88070 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.42 71.24 0.74 -0.11 16 2 C -0.02 -0.48 7.32 24.83 0.18 -0.30 16 3 C -0.19 -4.93 9.85 22.19 0.22 -4.71 16 4 C -0.19 -6.21 5.15 -19.94 -0.10 -6.31 16 5 C 0.20 7.59 1.09 2.24 0.00 7.59 16 6 C -0.13 -3.94 7.98 71.98 0.57 -3.36 16 7 N -0.72 -28.20 5.39 -442.79 -2.39 -30.59 16 8 C 0.68 35.01 5.93 179.33 1.06 36.08 16 9 O -0.56 -32.78 15.21 -3.78 -0.06 -32.84 16 10 N -0.41 -22.42 2.58 -598.32 -1.54 -23.96 16 11 C -0.40 -23.28 9.54 83.96 0.80 -22.48 16 12 H 0.10 5.52 7.94 -2.91 -0.02 5.50 16 13 C 0.03 1.60 4.56 84.92 0.39 1.99 16 14 N -0.85 -50.43 11.51 21.65 0.25 -50.18 16 15 Si 0.99 44.22 29.62 68.60 2.03 46.25 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 19 C 0.48 23.69 5.96 87.94 0.52 24.21 16 20 O -0.54 -28.94 17.81 -2.87 -0.05 -28.99 16 21 C -0.01 -0.18 7.23 24.83 0.18 0.00 16 22 C -0.08 -2.76 9.30 71.24 0.66 -2.10 16 23 O -0.18 -5.46 10.65 -2.49 -0.03 -5.49 16 24 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.18 3.34 7.67 -2.91 -0.02 3.32 16 28 H 0.09 2.43 8.11 -2.38 -0.02 2.41 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 2.37 8.06 -2.39 -0.02 2.35 16 31 H 0.44 14.12 8.96 -92.71 -0.83 13.29 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.07 2.61 8.14 -2.39 -0.02 2.60 16 34 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.07 2.82 5.13 -2.39 -0.01 2.81 16 Total: -1.00 -77.13 301.46 3.76 -73.38 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.31 Total: 21.92 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 5.23 Total: 30.50 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -3.68 Total: -104.73 kcal Atomic # 8 Polarization: -67.18 SS G_CDS: -0.14 Total: -67.32 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -77.13 3.76 -73.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072066030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.029 kcal (2) G-P(sol) polarization free energy of solvation -77.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds