Wall clock time and date at job start Tue Mar 31 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37828 * 119.93764 * 2 1 4 4 C 1.39692 * 119.87344 * 180.02562 * 3 2 1 5 5 C 1.47598 * 120.12403 * 179.97438 * 4 3 2 6 6 O 1.21488 * 120.00138 * 354.84342 * 5 4 3 7 7 O 1.34728 * 119.99558 * 174.83878 * 5 4 3 8 8 C 1.45202 * 116.99640 * 184.89124 * 7 5 4 9 9 C 1.53005 * 109.46997 * 183.71775 * 8 7 5 10 10 C 1.50694 * 115.55066 * 306.32003 * 9 8 7 11 11 H 1.08002 * 120.00042 * 144.82144 * 10 9 8 12 12 C 1.37878 * 120.00321 * 324.83016 * 10 9 8 13 13 N 1.31511 * 119.99599 * 345.00436 * 12 10 9 14 14 Si 1.86796 * 119.99974 * 165.00744 * 12 10 9 15 15 H 1.48501 * 109.47166 * 89.99885 * 14 12 10 16 16 H 1.48503 * 109.46754 * 209.99533 * 14 12 10 17 17 H 1.48490 * 109.47483 * 329.99484 * 14 12 10 18 18 C 1.53005 * 117.49635 * 160.65364 * 9 8 7 19 19 C 1.52996 * 117.49852 * 91.99833 * 9 8 7 20 20 C 1.39728 * 119.75098 * 359.97438 * 4 3 2 21 21 C 1.37798 * 119.87544 * 0.02562 * 20 4 3 22 22 C 1.38645 * 119.93323 * 180.02562 * 2 1 3 23 23 F 1.35099 * 119.87769 * 0.27366 * 22 2 1 24 24 H 1.09004 * 109.47013 * 270.00605 * 1 2 3 25 25 H 1.08998 * 109.46681 * 29.99799 * 1 2 3 26 26 H 1.08997 * 109.47571 * 150.00279 * 1 2 3 27 27 H 1.07996 * 120.07150 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47440 * 303.71592 * 8 7 5 29 29 H 1.08998 * 109.47406 * 63.72045 * 8 7 5 30 30 H 0.97004 * 120.00063 * 185.04780 * 13 12 10 31 31 H 1.09001 * 117.49829 * 359.97438 * 18 9 8 32 32 H 1.08996 * 117.49638 * 145.02034 * 18 9 8 33 33 H 1.09000 * 117.49655 * 214.98221 * 19 9 8 34 34 H 1.09002 * 117.50030 * 359.97119 * 19 9 8 35 35 H 1.08006 * 120.06143 * 179.97438 * 20 4 3 36 36 H 1.07998 * 119.93348 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.1944 0.0000 4 6 3.5918 1.1928 -0.0005 5 6 4.3340 2.4686 -0.0011 6 8 3.7337 3.5206 -0.0957 7 8 5.6772 2.4665 0.1033 8 6 6.3324 3.7582 0.2060 9 6 7.8496 3.5607 0.2223 10 6 8.3693 2.6043 1.2644 11 1 9.2205 1.9767 1.0448 12 6 7.7583 2.5302 2.4982 13 7 6.9278 3.4763 2.8784 14 14 8.1102 1.0860 3.6295 15 1 9.2692 1.4097 4.4995 16 1 6.9181 0.8162 4.4730 17 1 8.4228 -0.1159 2.8154 18 6 8.7228 4.7674 -0.1274 19 6 8.5828 3.6103 -1.1196 20 6 4.2838 -0.0211 -0.0005 21 6 3.5858 -1.2091 -0.0005 22 6 2.1989 -1.2015 -0.0005 23 9 1.5196 -2.3693 -0.0067 24 1 -0.3633 0.0001 1.0277 25 1 -0.3632 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6551 2.1297 -0.0004 28 1 6.0555 4.3751 -0.6489 29 1 6.0204 4.2517 1.1265 30 1 6.5546 3.4631 3.7737 31 1 8.2165 5.7018 -0.3694 32 1 9.6735 4.8692 0.3960 33 1 9.4414 2.9513 -1.2486 34 1 7.9844 3.7832 -2.0141 35 1 5.3639 -0.0281 -0.0014 36 1 4.1197 -2.1479 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076091091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:02 Heat of formation + Delta-G solvation = -85.237555 kcal Electronic energy + Delta-G solvation = -21231.041241 eV Core-core repulsion = 17788.547755 eV Total energy + Delta-G solvation = -3442.493486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -49.05784 -39.97211 -38.50697 -36.71314 -35.09300 -33.05695 -32.19730 -30.88408 -27.34125 -26.56368 -25.41531 -23.68833 -22.25911 -21.27016 -20.11172 -19.22682 -17.65286 -17.25764 -16.79827 -16.14191 -15.85161 -15.60490 -15.36680 -14.61633 -14.40944 -13.87106 -13.56530 -13.42539 -13.32245 -13.25071 -12.88795 -12.30393 -12.22601 -11.87775 -11.74400 -11.58984 -11.06177 -10.97697 -10.87787 -10.52883 -10.36990 -10.07187 -9.58540 -9.47883 -9.19035 -9.04647 -8.79442 -8.69734 -8.13279 -6.11175 -4.11441 0.67245 1.16508 2.82552 3.23955 3.32832 3.36331 3.37197 3.80823 4.08970 4.33332 4.57508 4.65719 4.88568 5.06026 5.12596 5.23334 5.43155 5.43628 5.52203 5.67055 5.85375 5.92784 5.99545 6.09375 6.13357 6.18673 6.32800 6.42469 6.57920 6.62212 6.73476 6.77904 6.93604 7.22754 7.33261 7.41914 7.85211 8.30144 8.51131 8.82454 9.47287 10.92204 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.005412 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.702999 B = 5172.009585 C = 5909.958248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.136 4.136 3 C -0.034 4.034 4 C -0.118 4.118 5 C 0.500 3.500 6 O -0.522 6.522 7 O -0.319 6.319 8 C 0.116 3.884 9 C 0.048 3.952 10 C -0.486 4.486 11 H 0.063 0.937 12 C 0.077 3.923 13 N -0.880 5.880 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.192 4.192 19 C -0.209 4.209 20 C -0.036 4.036 21 C -0.163 4.163 22 C 0.119 3.881 23 F -0.136 7.136 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.031 0.969 29 H 0.111 0.889 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.155 0.845 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.486 -7.185 -5.203 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.137 4.137 3 C -0.052 4.052 4 C -0.120 4.120 5 C 0.345 3.655 6 O -0.414 6.414 7 O -0.233 6.233 8 C 0.043 3.957 9 C 0.047 3.953 10 C -0.522 4.522 11 H 0.081 0.919 12 C -0.126 4.126 13 N -0.517 5.517 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.230 4.230 19 C -0.246 4.246 20 C -0.054 4.054 21 C -0.182 4.182 22 C 0.100 3.900 23 F -0.115 7.115 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.163 0.837 28 H 0.049 0.951 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.173 0.827 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.806 -6.886 -5.099 13.022 hybrid contribution 0.178 -0.723 0.669 1.001 sum -9.628 -7.608 -4.430 13.046 Atomic orbital electron populations 1.20706 0.89687 1.03386 1.02952 1.19790 0.97258 0.91398 1.05286 1.21025 0.92297 0.97932 0.93943 1.19395 0.93221 0.92129 1.07225 1.20902 0.82697 0.88480 0.73415 1.90759 1.70277 1.33417 1.46995 1.86540 1.17898 1.37865 1.81001 1.22835 0.91761 0.79645 1.01488 1.18871 0.87637 0.96216 0.92528 1.20373 1.14519 1.20435 0.96918 0.91901 1.24914 0.94290 0.95621 0.97796 1.69822 1.31597 1.31628 1.18655 0.86609 0.77783 0.83397 0.80445 1.20681 1.21005 1.19488 1.22969 1.03000 0.92535 1.04462 1.22969 1.04175 1.03330 0.94158 1.21523 1.01824 0.90050 0.92008 1.21135 0.91898 1.00098 1.05072 1.17816 0.90054 0.80858 1.01260 1.91478 1.80197 1.46239 1.93576 0.90726 0.90722 0.91169 0.83659 0.95059 0.87157 0.92644 0.91474 0.89739 0.90275 0.91292 0.82709 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.83 36.01 0.35 -0.70 16 2 C -0.14 -1.72 5.88 -104.62 -0.62 -2.34 16 3 C -0.03 -0.49 9.24 -39.19 -0.36 -0.85 16 4 C -0.12 -2.02 5.87 -104.98 -0.62 -2.63 16 5 C 0.50 10.49 7.88 34.55 0.27 10.77 16 6 O -0.52 -11.80 16.08 -19.26 -0.31 -12.11 16 7 O -0.32 -7.37 9.13 -40.57 -0.37 -7.74 16 8 C 0.12 2.80 4.66 37.16 0.17 2.97 16 9 C 0.05 1.17 2.10 -155.66 -0.33 0.84 16 10 C -0.49 -12.82 8.75 -34.44 -0.30 -13.12 16 11 H 0.06 1.65 7.86 -52.49 -0.41 1.24 16 12 C 0.08 2.04 5.12 -17.82 -0.09 1.95 16 13 N -0.88 -24.08 10.96 55.43 0.61 -23.47 16 14 Si 0.89 20.51 29.57 -169.99 -5.03 15.48 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C -0.19 -4.22 9.96 -26.69 -0.27 -4.49 16 19 C -0.21 -4.44 9.92 -26.70 -0.26 -4.70 16 20 C -0.04 -0.55 9.61 -39.19 -0.38 -0.92 16 21 C -0.16 -2.12 10.01 -39.58 -0.40 -2.52 16 22 C 0.12 1.55 7.25 -39.26 -0.28 1.26 16 23 F -0.14 -1.70 16.46 2.25 0.04 -1.66 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.07 0.62 7.63 -51.93 -0.40 0.22 16 27 H 0.15 2.00 7.66 -52.49 -0.40 1.60 16 28 H 0.03 0.71 7.95 -51.93 -0.41 0.30 16 29 H 0.11 2.95 6.12 -51.93 -0.32 2.63 16 30 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.16 2.40 7.62 -52.48 -0.40 2.00 16 36 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 319.59 15.07 4.82 4.82 Total: -1.00 -28.65 319.59 -7.78 -36.43 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.43 Total: 2.74 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.10 Total: -14.49 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.61 Total: -23.47 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.68 Total: -19.85 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.65 -7.78 -36.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076091091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.811 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds