Wall clock time and date at job start Tue Mar 31 2020 00:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37828 * 119.93764 * 2 1 4 4 C 1.39692 * 119.87344 * 180.02562 * 3 2 1 5 5 C 1.47598 * 120.12403 * 179.97438 * 4 3 2 6 6 O 1.21488 * 120.00138 * 354.84342 * 5 4 3 7 7 O 1.34728 * 119.99558 * 174.83878 * 5 4 3 8 8 C 1.45202 * 116.99640 * 184.89124 * 7 5 4 9 9 C 1.53005 * 109.46997 * 183.71775 * 8 7 5 10 10 C 1.50694 * 115.55066 * 306.32003 * 9 8 7 11 11 H 1.08002 * 120.00042 * 144.82144 * 10 9 8 12 12 C 1.37878 * 120.00321 * 324.83016 * 10 9 8 13 13 N 1.31511 * 119.99599 * 345.00436 * 12 10 9 14 14 Si 1.86796 * 119.99974 * 165.00744 * 12 10 9 15 15 H 1.48501 * 109.47166 * 89.99885 * 14 12 10 16 16 H 1.48503 * 109.46754 * 209.99533 * 14 12 10 17 17 H 1.48490 * 109.47483 * 329.99484 * 14 12 10 18 18 C 1.53005 * 117.49635 * 160.65364 * 9 8 7 19 19 C 1.52996 * 117.49852 * 91.99833 * 9 8 7 20 20 C 1.39728 * 119.75098 * 359.97438 * 4 3 2 21 21 C 1.37798 * 119.87544 * 0.02562 * 20 4 3 22 22 C 1.38645 * 119.93323 * 180.02562 * 2 1 3 23 23 F 1.35099 * 119.87769 * 0.27366 * 22 2 1 24 24 H 1.09004 * 109.47013 * 270.00605 * 1 2 3 25 25 H 1.08998 * 109.46681 * 29.99799 * 1 2 3 26 26 H 1.08997 * 109.47571 * 150.00279 * 1 2 3 27 27 H 1.07996 * 120.07150 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47440 * 303.71592 * 8 7 5 29 29 H 1.08998 * 109.47406 * 63.72045 * 8 7 5 30 30 H 0.97004 * 120.00063 * 185.04780 * 13 12 10 31 31 H 1.09001 * 117.49829 * 359.97438 * 18 9 8 32 32 H 1.08996 * 117.49638 * 145.02034 * 18 9 8 33 33 H 1.09000 * 117.49655 * 214.98221 * 19 9 8 34 34 H 1.09002 * 117.50030 * 359.97119 * 19 9 8 35 35 H 1.08006 * 120.06143 * 179.97438 * 20 4 3 36 36 H 1.07998 * 119.93348 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.1944 0.0000 4 6 3.5918 1.1928 -0.0005 5 6 4.3340 2.4686 -0.0011 6 8 3.7337 3.5206 -0.0957 7 8 5.6772 2.4665 0.1033 8 6 6.3324 3.7582 0.2060 9 6 7.8496 3.5607 0.2223 10 6 8.3693 2.6043 1.2644 11 1 9.2205 1.9767 1.0448 12 6 7.7583 2.5302 2.4982 13 7 6.9278 3.4763 2.8784 14 14 8.1102 1.0860 3.6295 15 1 9.2692 1.4097 4.4995 16 1 6.9181 0.8162 4.4730 17 1 8.4228 -0.1159 2.8154 18 6 8.7228 4.7674 -0.1274 19 6 8.5828 3.6103 -1.1196 20 6 4.2838 -0.0211 -0.0005 21 6 3.5858 -1.2091 -0.0005 22 6 2.1989 -1.2015 -0.0005 23 9 1.5196 -2.3693 -0.0067 24 1 -0.3633 0.0001 1.0277 25 1 -0.3632 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6551 2.1297 -0.0004 28 1 6.0555 4.3751 -0.6489 29 1 6.0204 4.2517 1.1265 30 1 6.5546 3.4631 3.7737 31 1 8.2165 5.7018 -0.3694 32 1 9.6735 4.8692 0.3960 33 1 9.4414 2.9513 -1.2486 34 1 7.9844 3.7832 -2.0141 35 1 5.3639 -0.0281 -0.0014 36 1 4.1197 -2.1479 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076091091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:01 Heat of formation + Delta-G solvation = -97.975453 kcal Electronic energy + Delta-G solvation = -21231.593598 eV Core-core repulsion = 17788.547755 eV Total energy + Delta-G solvation = -3443.045843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.08207 -41.49514 -39.83145 -38.47905 -36.84615 -34.18726 -34.07250 -32.08369 -28.72528 -27.92929 -27.35705 -25.05929 -23.35728 -22.99779 -21.55241 -21.12205 -18.79372 -18.71958 -18.50843 -17.51252 -17.27919 -17.08940 -16.81007 -16.48762 -15.70666 -15.39875 -14.99421 -14.53764 -14.39219 -14.35083 -14.22654 -13.94481 -13.66258 -13.42461 -12.95792 -12.93282 -12.83868 -12.76569 -12.32075 -12.13629 -12.10251 -11.78133 -11.43780 -11.27430 -11.12304 -10.64521 -10.13475 -10.04723 -9.81625 -8.09951 -6.15880 -0.55104 0.08709 1.38884 1.40912 1.45144 1.54384 1.82488 2.42151 2.52094 3.00321 3.02484 3.51625 3.56418 3.67158 3.76498 4.02888 4.08480 4.19998 4.34022 4.49613 4.59039 4.66942 4.72953 4.74124 4.76416 4.91414 4.93948 5.01282 5.10514 5.13973 5.17494 5.22042 5.37920 5.52248 5.67036 5.69604 5.81904 6.34167 6.75494 6.87002 7.44858 8.91989 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.005412 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.702999 B = 5172.009585 C = 5909.958248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.128 4.128 3 C -0.035 4.035 4 C -0.144 4.144 5 C 0.496 3.504 6 O -0.548 6.548 7 O -0.330 6.330 8 C 0.125 3.875 9 C 0.009 3.991 10 C -0.499 4.499 11 H 0.058 0.942 12 C 0.035 3.965 13 N -0.907 5.907 14 Si 0.944 3.056 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.261 1.261 18 C -0.186 4.186 19 C -0.185 4.185 20 C -0.043 4.043 21 C -0.154 4.154 22 C 0.125 3.875 23 F -0.128 7.128 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.279 -9.038 -5.723 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.129 4.129 3 C -0.053 4.053 4 C -0.145 4.145 5 C 0.343 3.657 6 O -0.442 6.442 7 O -0.245 6.245 8 C 0.051 3.949 9 C 0.009 3.991 10 C -0.536 4.536 11 H 0.076 0.924 12 C -0.165 4.165 13 N -0.544 5.544 14 Si 0.770 3.230 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.185 1.185 18 C -0.224 4.224 19 C -0.222 4.222 20 C -0.061 4.061 21 C -0.173 4.173 22 C 0.106 3.894 23 F -0.107 7.107 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.166 0.834 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.165 0.835 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.589 -8.751 -5.632 14.847 hybrid contribution 0.364 -0.186 0.787 0.887 sum -10.225 -8.937 -4.845 14.418 Atomic orbital electron populations 1.20824 0.87200 1.04677 1.04080 1.20073 0.98947 0.90434 1.03469 1.21091 0.91250 0.99008 0.93954 1.19326 0.94047 0.90746 1.10398 1.21633 0.81996 0.89838 0.72277 1.90723 1.70356 1.34727 1.48400 1.86539 1.19287 1.37214 1.81457 1.22545 0.92024 0.80221 1.00075 1.19008 0.87940 0.97768 0.94387 1.20606 1.14506 1.20838 0.97644 0.92356 1.25554 0.94324 0.97489 0.99160 1.69963 1.32671 1.33068 1.18744 0.85757 0.77460 0.80995 0.78810 1.20238 1.21240 1.18529 1.22970 1.02270 0.92813 1.04383 1.22984 1.03585 1.02254 0.93394 1.21463 1.01582 0.90304 0.92767 1.21331 0.92120 1.00198 1.03609 1.17895 0.90111 0.81165 1.00253 1.91506 1.80007 1.45806 1.93355 0.89544 0.89409 0.89993 0.83381 0.94485 0.90259 0.93008 0.90194 0.89964 0.89483 0.89482 0.83524 0.81259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.83 71.24 0.70 -1.09 16 2 C -0.13 -2.95 5.88 -19.86 -0.12 -3.07 16 3 C -0.03 -0.98 9.24 22.52 0.21 -0.78 16 4 C -0.14 -4.92 5.87 -20.10 -0.12 -5.04 16 5 C 0.50 21.39 7.88 70.29 0.55 21.94 16 6 O -0.55 -25.59 16.08 19.87 0.32 -25.27 16 7 O -0.33 -15.68 9.13 -56.38 -0.51 -16.20 16 8 C 0.12 6.19 4.66 71.98 0.34 6.52 16 9 C 0.01 0.46 2.10 -52.93 -0.11 0.35 16 10 C -0.50 -26.53 8.75 25.60 0.22 -26.30 16 11 H 0.06 3.06 7.86 -2.91 -0.02 3.04 16 12 C 0.04 1.88 5.12 84.66 0.43 2.32 16 13 N -0.91 -50.82 10.96 21.45 0.24 -50.58 16 14 Si 0.94 42.19 29.57 68.60 2.03 44.22 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 18 C -0.19 -8.10 9.96 30.62 0.30 -7.79 16 19 C -0.19 -7.61 9.92 30.62 0.30 -7.31 16 20 C -0.04 -1.28 9.61 22.53 0.22 -1.07 16 21 C -0.15 -3.66 10.01 22.27 0.22 -3.43 16 22 C 0.13 2.90 7.25 22.47 0.16 3.06 16 23 F -0.13 -2.76 16.46 44.97 0.74 -2.02 16 24 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 26 H 0.08 1.15 7.63 -2.39 -0.02 1.14 16 27 H 0.15 4.03 7.66 -2.91 -0.02 4.00 16 28 H 0.04 1.73 7.95 -2.39 -0.02 1.71 16 29 H 0.08 4.42 6.12 -2.39 -0.01 4.41 16 30 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 31 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.15 4.57 7.62 -2.91 -0.02 4.55 16 36 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -61.70 319.59 7.22 -54.48 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.09 Total: 17.05 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 3.32 Total: -21.69 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.24 Total: -50.58 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.19 Total: -41.47 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.74 Total: -2.02 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -61.70 7.22 -54.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076091091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.496 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds