Wall clock time and date at job start Tue Mar 31 2020 00:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37967 * 120.05196 * 2 1 4 4 C 1.38312 * 120.17953 * 179.97438 * 3 2 1 5 5 C 1.38601 * 120.27811 * 0.02562 * 4 3 2 6 6 F 1.35099 * 119.95164 * 180.02562 * 5 4 3 7 7 C 1.38159 * 120.09689 * 0.04097 * 5 4 3 8 8 C 1.39610 * 120.04900 * 179.72133 * 2 1 3 9 9 C 1.47733 * 120.13859 * 0.02562 * 8 2 1 10 10 O 1.21475 * 119.99935 * 5.48650 * 9 8 2 11 11 O 1.34709 * 120.00198 * 185.48099 * 9 8 2 12 12 C 1.45199 * 117.00270 * 185.13732 * 11 9 8 13 13 C 1.52995 * 109.47554 * 175.14152 * 12 11 9 14 14 C 1.50698 * 115.55266 * 186.85596 * 13 12 11 15 15 H 1.07999 * 120.00129 * 147.93400 * 14 13 12 16 16 C 1.37875 * 120.00039 * 327.93397 * 14 13 12 17 17 N 1.31514 * 120.00335 * 165.14628 * 16 14 13 18 18 Si 1.86805 * 119.99844 * 345.14384 * 16 14 13 19 19 H 1.48498 * 109.46919 * 95.30942 * 18 16 14 20 20 H 1.48497 * 109.47160 * 215.31269 * 18 16 14 21 21 H 1.48500 * 109.46886 * 335.31451 * 18 16 14 22 22 C 1.53001 * 117.50029 * 41.17720 * 13 12 11 23 23 C 1.53009 * 117.49675 * 332.52189 * 13 12 11 24 24 H 1.09004 * 109.47282 * 97.77184 * 1 2 3 25 25 H 1.08994 * 109.47104 * 337.77489 * 1 2 3 26 26 H 1.09005 * 109.47508 * 217.77185 * 1 2 3 27 27 H 1.08001 * 119.91338 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.85791 * 180.02562 * 4 3 2 29 29 H 1.08001 * 120.08563 * 179.97438 * 7 5 4 30 30 H 1.09006 * 109.46693 * 295.13975 * 12 11 9 31 31 H 1.09004 * 109.47081 * 55.13441 * 12 11 9 32 32 H 0.96997 * 119.99963 * 180.02562 * 17 16 14 33 33 H 1.09004 * 117.49691 * 0.02562 * 22 13 12 34 34 H 1.09001 * 117.49431 * 145.02175 * 22 13 12 35 35 H 1.08999 * 117.49716 * 214.98365 * 23 13 12 36 36 H 1.09000 * 117.49699 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1942 0.0000 4 6 3.5810 1.1973 0.0005 5 6 4.2825 0.0019 0.0005 6 9 5.6334 0.0126 0.0016 7 6 3.6022 -1.2006 -0.0008 8 6 2.2060 -1.2084 0.0059 9 6 1.4716 -2.4903 0.0115 10 8 0.2610 -2.4971 -0.0895 11 8 2.1442 -3.6515 0.1286 12 6 1.3718 -4.8754 0.0117 13 6 2.3151 -6.0794 0.0492 14 6 1.6744 -7.4159 -0.2234 15 1 2.2379 -8.1945 -0.7161 16 6 0.3689 -7.6448 0.1561 17 7 -0.2849 -8.6786 -0.3271 18 14 -0.4715 -6.4864 1.3568 19 1 -1.2486 -5.4703 0.6027 20 1 -1.3874 -7.2605 2.2327 21 1 0.5538 -5.8076 2.1895 22 6 3.4701 -6.0410 1.0519 23 6 3.7485 -5.8695 -0.4435 24 1 -0.3634 -0.1390 -1.0183 25 1 -0.3633 0.9513 0.3887 26 1 -0.3634 -0.8123 0.6295 27 1 1.6573 2.1292 -0.0004 28 1 4.1166 2.1351 0.0010 29 1 4.1490 -2.1320 -0.0013 30 1 0.6666 -4.9405 0.8403 31 1 0.8251 -4.8714 -0.9313 32 1 -1.2035 -8.8393 -0.0603 33 1 3.5577 -5.1582 1.6852 34 1 3.7667 -6.9826 1.5142 35 1 4.2280 -6.6982 -0.9644 36 1 4.0191 -4.8738 -0.7947 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078949135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:41 Heat of formation + Delta-G solvation = -67.289548 kcal Electronic energy + Delta-G solvation = -21380.113937 eV Core-core repulsion = 17938.398734 eV Total energy + Delta-G solvation = -3441.715203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.08156 -40.59761 -38.90636 -37.15510 -35.45358 -32.51566 -32.32674 -31.84023 -27.99317 -26.98822 -25.44752 -24.15843 -22.14930 -21.41321 -20.85230 -19.22168 -18.29934 -17.36741 -16.71368 -16.41206 -16.07737 -15.86680 -15.73548 -15.34799 -14.75847 -14.16141 -13.94875 -13.83176 -13.68523 -13.20776 -12.85480 -12.63954 -12.26934 -12.06623 -11.93517 -11.77629 -11.67364 -11.19677 -10.83037 -10.49246 -10.47070 -10.13510 -9.79900 -9.53397 -9.46262 -9.30094 -8.82761 -8.75036 -8.36606 -6.30625 -4.22653 0.39891 0.87256 2.48853 2.85621 3.20074 3.28213 3.31696 3.40464 3.94159 4.23471 4.35719 4.55995 4.62592 4.66905 4.83391 4.99803 5.31421 5.37190 5.49431 5.61368 5.64271 5.67534 5.69827 5.77484 5.82922 5.92152 6.03739 6.14795 6.26948 6.48699 6.51361 6.56972 6.68694 6.87411 6.96144 7.19119 7.57417 7.95681 8.35957 8.75556 9.32552 10.81472 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.005333 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.668358 B = 5248.737511 C = 6213.099054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.030 4.030 3 C -0.107 4.107 4 C -0.119 4.119 5 C 0.078 3.922 6 F -0.136 7.136 7 C -0.091 4.091 8 C -0.095 4.095 9 C 0.499 3.501 10 O -0.498 6.498 11 O -0.346 6.346 12 C 0.087 3.913 13 C 0.005 3.995 14 C -0.484 4.484 15 H 0.086 0.914 16 C 0.079 3.921 17 N -0.880 5.880 18 Si 0.869 3.131 19 H -0.272 1.272 20 H -0.289 1.289 21 H -0.259 1.259 22 C -0.201 4.201 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.154 0.846 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.269 0.731 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.318 20.273 1.303 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.031 4.031 3 C -0.125 4.125 4 C -0.138 4.138 5 C 0.059 3.941 6 F -0.115 7.115 7 C -0.110 4.110 8 C -0.096 4.096 9 C 0.344 3.656 10 O -0.388 6.388 11 O -0.262 6.262 12 C 0.015 3.985 13 C 0.004 3.996 14 C -0.521 4.521 15 H 0.104 0.896 16 C -0.125 4.125 17 N -0.515 5.515 18 Si 0.699 3.301 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.185 1.185 22 C -0.239 4.239 23 C -0.217 4.217 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.172 0.828 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.812 20.075 1.269 20.682 hybrid contribution -0.278 0.466 0.633 0.833 sum 4.533 20.541 1.902 21.121 Atomic orbital electron populations 1.21142 0.89319 1.03362 1.04234 1.20149 0.97473 0.91056 0.94374 1.20866 0.92971 0.97803 1.00891 1.21379 0.94951 0.97364 1.00089 1.17508 0.77254 0.94194 1.05144 1.91526 1.28491 1.97353 1.94090 1.21522 0.93710 0.98427 0.97379 1.18907 0.92518 0.91024 1.07135 1.20979 0.86000 0.84888 0.73776 1.90800 1.14761 1.87899 1.45344 1.86498 1.43101 1.14879 1.81696 1.23619 0.94093 0.78685 1.02110 1.19377 0.86929 0.92482 1.00793 1.20279 0.97445 0.94869 1.39502 0.89577 1.24990 0.96758 0.95460 0.95315 1.69914 1.11062 1.29363 1.41174 0.87226 0.79649 0.80448 0.82785 1.19788 1.21639 1.18513 1.23120 1.08144 1.00942 0.91659 1.22755 1.01230 1.00610 0.97070 0.90090 0.91865 0.88547 0.84070 0.84150 0.82838 0.91453 0.90343 0.92088 0.91006 0.89677 0.89924 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 8.70 36.00 0.31 -1.10 16 2 C -0.03 -0.36 5.91 -104.21 -0.62 -0.97 16 3 C -0.11 -0.96 9.66 -39.65 -0.38 -1.35 16 4 C -0.12 -1.08 10.02 -39.42 -0.39 -1.47 16 5 C 0.08 0.89 7.29 -39.48 -0.29 0.60 16 6 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 7 C -0.09 -1.18 9.59 -39.09 -0.38 -1.56 16 8 C -0.09 -1.35 5.87 -104.99 -0.62 -1.96 16 9 C 0.50 8.97 7.83 34.61 0.27 9.24 16 10 O -0.50 -9.85 13.12 -19.25 -0.25 -10.10 16 11 O -0.35 -6.80 7.77 -40.52 -0.31 -7.11 16 12 C 0.09 1.98 3.99 37.16 0.15 2.13 16 13 C 0.01 0.12 1.93 -155.66 -0.30 -0.18 16 14 C -0.48 -13.39 9.58 -34.44 -0.33 -13.72 16 15 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 16 C 0.08 2.24 5.41 -17.82 -0.10 2.14 16 17 N -0.88 -26.06 13.96 55.43 0.77 -25.29 16 18 Si 0.87 21.61 24.13 -169.99 -4.10 17.51 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.26 -6.26 6.42 56.52 0.36 -5.90 16 22 C -0.20 -4.27 9.67 -26.69 -0.26 -4.53 16 23 C -0.18 -3.70 9.62 -26.69 -0.26 -3.95 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 26 H 0.10 1.34 5.90 -51.93 -0.31 1.04 16 27 H 0.14 0.84 8.05 -52.49 -0.42 0.42 16 28 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.15 1.98 7.63 -52.49 -0.40 1.58 16 30 H 0.07 1.62 2.68 -51.93 -0.14 1.48 16 31 H 0.08 1.83 8.10 -51.93 -0.42 1.41 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.43 7.88 -51.93 -0.41 1.02 16 34 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 35 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 36 H 0.08 1.47 7.44 -51.93 -0.39 1.08 16 LS Contribution 306.51 15.07 4.62 4.62 Total: -1.00 -29.99 306.51 -6.61 -36.60 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.19 Total: 2.03 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -3.18 Total: -16.69 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.77 Total: -25.29 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.57 Total: -17.21 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.10 Total: 17.51 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.99 -6.61 -36.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078949135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.690 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds