Wall clock time and date at job start Tue Mar 31 2020 00:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37967 * 120.05196 * 2 1 4 4 C 1.38312 * 120.17953 * 179.97438 * 3 2 1 5 5 C 1.38601 * 120.27811 * 0.02562 * 4 3 2 6 6 F 1.35099 * 119.95164 * 180.02562 * 5 4 3 7 7 C 1.38159 * 120.09689 * 0.04097 * 5 4 3 8 8 C 1.39610 * 120.04900 * 179.72133 * 2 1 3 9 9 C 1.47733 * 120.13859 * 0.02562 * 8 2 1 10 10 O 1.21475 * 119.99935 * 5.48650 * 9 8 2 11 11 O 1.34709 * 120.00198 * 185.48099 * 9 8 2 12 12 C 1.45199 * 117.00270 * 185.13732 * 11 9 8 13 13 C 1.52995 * 109.47554 * 175.14152 * 12 11 9 14 14 C 1.50698 * 115.55266 * 186.85596 * 13 12 11 15 15 H 1.07999 * 120.00129 * 147.93400 * 14 13 12 16 16 C 1.37875 * 120.00039 * 327.93397 * 14 13 12 17 17 N 1.31514 * 120.00335 * 165.14628 * 16 14 13 18 18 Si 1.86805 * 119.99844 * 345.14384 * 16 14 13 19 19 H 1.48498 * 109.46919 * 95.30942 * 18 16 14 20 20 H 1.48497 * 109.47160 * 215.31269 * 18 16 14 21 21 H 1.48500 * 109.46886 * 335.31451 * 18 16 14 22 22 C 1.53001 * 117.50029 * 41.17720 * 13 12 11 23 23 C 1.53009 * 117.49675 * 332.52189 * 13 12 11 24 24 H 1.09004 * 109.47282 * 97.77184 * 1 2 3 25 25 H 1.08994 * 109.47104 * 337.77489 * 1 2 3 26 26 H 1.09005 * 109.47508 * 217.77185 * 1 2 3 27 27 H 1.08001 * 119.91338 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.85791 * 180.02562 * 4 3 2 29 29 H 1.08001 * 120.08563 * 179.97438 * 7 5 4 30 30 H 1.09006 * 109.46693 * 295.13975 * 12 11 9 31 31 H 1.09004 * 109.47081 * 55.13441 * 12 11 9 32 32 H 0.96997 * 119.99963 * 180.02562 * 17 16 14 33 33 H 1.09004 * 117.49691 * 0.02562 * 22 13 12 34 34 H 1.09001 * 117.49431 * 145.02175 * 22 13 12 35 35 H 1.08999 * 117.49716 * 214.98365 * 23 13 12 36 36 H 1.09000 * 117.49699 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1942 0.0000 4 6 3.5810 1.1973 0.0005 5 6 4.2825 0.0019 0.0005 6 9 5.6334 0.0126 0.0016 7 6 3.6022 -1.2006 -0.0008 8 6 2.2060 -1.2084 0.0059 9 6 1.4716 -2.4903 0.0115 10 8 0.2610 -2.4971 -0.0895 11 8 2.1442 -3.6515 0.1286 12 6 1.3718 -4.8754 0.0117 13 6 2.3151 -6.0794 0.0492 14 6 1.6744 -7.4159 -0.2234 15 1 2.2379 -8.1945 -0.7161 16 6 0.3689 -7.6448 0.1561 17 7 -0.2849 -8.6786 -0.3271 18 14 -0.4715 -6.4864 1.3568 19 1 -1.2486 -5.4703 0.6027 20 1 -1.3874 -7.2605 2.2327 21 1 0.5538 -5.8076 2.1895 22 6 3.4701 -6.0410 1.0519 23 6 3.7485 -5.8695 -0.4435 24 1 -0.3634 -0.1390 -1.0183 25 1 -0.3633 0.9513 0.3887 26 1 -0.3634 -0.8123 0.6295 27 1 1.6573 2.1292 -0.0004 28 1 4.1166 2.1351 0.0010 29 1 4.1490 -2.1320 -0.0013 30 1 0.6666 -4.9405 0.8403 31 1 0.8251 -4.8714 -0.9313 32 1 -1.2035 -8.8393 -0.0603 33 1 3.5577 -5.1582 1.6852 34 1 3.7667 -6.9826 1.5142 35 1 4.2280 -6.6982 -0.9644 36 1 4.0191 -4.8738 -0.7947 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078949135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:40 Heat of formation + Delta-G solvation = -83.536905 kcal Electronic energy + Delta-G solvation = -21380.818475 eV Core-core repulsion = 17938.398734 eV Total energy + Delta-G solvation = -3442.419741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.95066 -41.91888 -40.03600 -38.75886 -37.05944 -34.46387 -33.40100 -32.77484 -29.70442 -28.08814 -27.22494 -25.27764 -23.16634 -23.11979 -22.00537 -21.15453 -19.52385 -18.91215 -18.22722 -17.87363 -17.26968 -16.84060 -16.73260 -16.57138 -16.49764 -15.62059 -15.39963 -14.85629 -14.83698 -14.54613 -14.47562 -14.24557 -13.60859 -13.25151 -13.06745 -12.91777 -12.80238 -12.72162 -12.55135 -12.38525 -12.13354 -11.90931 -11.50336 -11.24515 -11.20546 -10.69007 -10.36259 -10.28330 -9.68878 -8.48656 -6.42761 -0.56682 0.02954 1.19712 1.23466 1.27643 1.30478 1.49722 2.15489 2.45341 2.69022 3.03037 3.33275 3.45115 3.65866 3.77535 3.87321 3.92006 3.97492 4.09071 4.12933 4.39250 4.49855 4.64848 4.70925 4.74850 4.86282 4.87399 4.89946 4.94131 5.03934 5.13041 5.21024 5.26012 5.49390 5.50476 5.55507 5.71892 6.16827 6.52435 6.56068 7.14524 8.67791 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.005333 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.668358 B = 5248.737511 C = 6213.099054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.034 4.034 3 C -0.092 4.092 4 C -0.098 4.098 5 C 0.070 3.930 6 F -0.140 7.140 7 C -0.101 4.101 8 C -0.119 4.119 9 C 0.494 3.506 10 O -0.523 6.523 11 O -0.344 6.344 12 C 0.098 3.902 13 C -0.031 4.031 14 C -0.489 4.489 15 H 0.053 0.947 16 C 0.034 3.966 17 N -0.925 5.925 18 Si 0.925 3.075 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.247 1.247 22 C -0.184 4.184 23 C -0.158 4.158 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.184 0.816 28 H 0.178 0.822 29 H 0.146 0.854 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.272 0.728 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 24.377 2.119 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.034 4.034 3 C -0.109 4.109 4 C -0.116 4.116 5 C 0.051 3.949 6 F -0.119 7.119 7 C -0.120 4.120 8 C -0.120 4.120 9 C 0.341 3.659 10 O -0.415 6.415 11 O -0.260 6.260 12 C 0.025 3.975 13 C -0.032 4.032 14 C -0.526 4.526 15 H 0.071 0.929 16 C -0.167 4.167 17 N -0.563 5.563 18 Si 0.753 3.247 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.173 1.173 22 C -0.221 4.221 23 C -0.195 4.195 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.201 0.799 28 H 0.196 0.804 29 H 0.163 0.837 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.984 24.194 2.092 25.011 hybrid contribution -0.533 -0.702 0.312 0.935 sum 5.450 23.492 2.404 24.235 Atomic orbital electron populations 1.21104 0.89290 1.04101 1.03443 1.20377 0.97713 0.91250 0.94081 1.21287 0.93004 0.98033 0.98571 1.21823 0.95048 0.97802 0.96912 1.17642 0.77168 0.94516 1.05576 1.91521 1.28788 1.97370 1.94175 1.21453 0.93224 0.99154 0.98134 1.18773 0.92942 0.89689 1.10643 1.21754 0.86117 0.85305 0.72742 1.90795 1.15893 1.88112 1.46652 1.86480 1.42619 1.14643 1.82262 1.23113 0.93646 0.80068 1.00679 1.19271 0.88346 0.91216 1.04362 1.20429 0.97467 0.96138 1.38611 0.92924 1.25626 0.97505 0.96834 0.96723 1.70013 1.11718 1.31479 1.43069 0.86316 0.78877 0.78552 0.80964 1.20189 1.21094 1.17273 1.23099 1.05131 1.01755 0.92144 1.22811 0.98055 1.01887 0.96792 0.90652 0.88298 0.91578 0.79894 0.80436 0.83656 0.92725 0.92023 0.91836 0.89130 0.89715 0.89810 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 8.70 71.23 0.62 -1.94 16 2 C -0.03 -0.71 5.91 -19.60 -0.12 -0.82 16 3 C -0.09 -1.18 9.66 22.22 0.21 -0.96 16 4 C -0.10 -1.27 10.02 22.37 0.22 -1.05 16 5 C 0.07 1.37 7.29 22.34 0.16 1.53 16 6 F -0.14 -2.92 17.26 44.97 0.78 -2.15 16 7 C -0.10 -2.43 9.59 22.58 0.22 -2.22 16 8 C -0.12 -3.24 5.87 -20.10 -0.12 -3.36 16 9 C 0.49 17.73 7.83 70.33 0.55 18.28 16 10 O -0.52 -21.01 13.12 19.92 0.26 -20.74 16 11 O -0.34 -13.43 7.77 -56.19 -0.44 -13.86 16 12 C 0.10 4.49 3.99 71.98 0.29 4.78 16 13 C -0.03 -1.48 1.93 -52.93 -0.10 -1.58 16 14 C -0.49 -27.92 9.58 25.60 0.25 -27.67 16 15 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 16 C 0.03 1.95 5.41 84.65 0.46 2.41 16 17 N -0.93 -56.82 13.96 21.45 0.30 -56.52 16 18 Si 0.92 45.78 24.13 68.60 1.66 47.44 16 19 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 20 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.25 -11.64 6.42 99.48 0.64 -11.00 16 22 C -0.18 -7.56 9.67 30.62 0.30 -7.26 16 23 C -0.16 -6.36 9.62 30.62 0.29 -6.07 16 24 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.10 1.29 8.03 -2.39 -0.02 1.27 16 26 H 0.07 1.81 5.90 -2.38 -0.01 1.80 16 27 H 0.18 0.89 8.05 -2.91 -0.02 0.87 16 28 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 29 H 0.15 3.63 7.63 -2.91 -0.02 3.61 16 30 H 0.06 2.64 2.68 -2.38 -0.01 2.64 16 31 H 0.06 2.97 8.10 -2.38 -0.02 2.95 16 32 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 33 H 0.09 3.40 7.88 -2.38 -0.02 3.38 16 34 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 35 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.10 3.59 7.44 -2.39 -0.02 3.58 16 Total: -1.00 -67.88 306.51 6.82 -61.06 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.04 Total: 10.71 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 3.23 Total: -25.93 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.30 Total: -56.52 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.18 Total: -34.61 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.66 Total: 47.44 kcal Total: -67.88 6.82 -61.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078949135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.478 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds