Wall clock time and date at job start Tue Mar 31 2020 00:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38479 * 119.82246 * 2 1 4 4 C 1.37841 * 120.22493 * 179.74529 * 3 2 1 5 5 C 1.39712 * 119.86795 * 0.57455 * 4 3 2 6 6 C 1.47572 * 120.17003 * 179.70026 * 5 4 3 7 7 O 1.21488 * 119.99919 * 186.17329 * 6 5 4 8 8 O 1.34728 * 119.99499 * 5.89792 * 6 5 4 9 9 C 1.45205 * 116.99844 * 176.31592 * 8 6 5 10 10 C 1.52991 * 109.47450 * 184.71346 * 9 8 6 11 11 C 1.50705 * 115.54918 * 306.67114 * 10 9 8 12 12 H 1.07996 * 119.99836 * 144.81474 * 11 10 9 13 13 C 1.37881 * 119.99844 * 324.81960 * 11 10 9 14 14 N 1.31506 * 119.99799 * 350.92618 * 13 11 10 15 15 Si 1.86801 * 119.99970 * 170.93481 * 13 11 10 16 16 H 1.48498 * 109.47127 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47256 * 119.99474 * 15 13 11 18 18 H 1.48500 * 109.46950 * 239.99608 * 15 13 11 19 19 C 1.52996 * 117.50192 * 161.00181 * 10 9 8 20 20 C 1.53003 * 117.50208 * 92.34133 * 10 9 8 21 21 C 1.39875 * 119.66116 * 359.42981 * 5 4 3 22 22 F 1.35104 * 120.11808 * 180.29723 * 21 5 4 23 23 C 1.38204 * 119.82824 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47171 * 269.97947 * 1 2 3 25 25 H 1.08992 * 109.47581 * 29.97862 * 1 2 3 26 26 H 1.09008 * 109.47076 * 149.97991 * 1 2 3 27 27 H 1.08001 * 119.88554 * 0.04385 * 3 2 1 28 28 H 1.07998 * 120.06391 * 180.29672 * 4 3 2 29 29 H 1.09005 * 109.46653 * 304.71439 * 9 8 6 30 30 H 1.09005 * 109.47115 * 64.70943 * 9 8 6 31 31 H 0.97010 * 120.00060 * 185.02299 * 14 13 11 32 32 H 1.09003 * 117.49802 * 359.97438 * 19 10 9 33 33 H 1.09007 * 117.50245 * 145.02166 * 19 10 9 34 34 H 1.09000 * 117.49714 * 214.98037 * 20 10 9 35 35 H 1.08995 * 117.49488 * 359.97305 * 20 10 9 36 36 H 1.07996 * 119.93653 * 359.97073 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2014 0.0000 4 6 3.5740 1.2111 0.0053 5 6 4.2783 0.0045 -0.0015 6 6 5.7540 0.0071 -0.0025 7 8 6.3632 -1.0372 -0.1215 8 8 6.4256 1.1684 0.1229 9 6 7.8735 1.0878 0.1964 10 6 8.4495 2.4817 0.4534 11 6 8.0075 3.5549 -0.5079 12 1 7.8567 4.5652 -0.1573 13 6 7.7957 3.2469 -1.8351 14 7 8.1474 2.0685 -2.3009 15 14 7.0093 4.5037 -2.9716 16 1 6.7084 5.7415 -2.2082 17 1 7.9438 4.8208 -4.0812 18 1 5.7500 3.9478 -3.5286 19 6 9.8758 2.5670 1.0003 20 6 8.6869 2.8909 1.9084 21 6 3.5775 -1.2061 -0.0015 22 9 4.2493 -2.3783 -0.0019 23 6 2.1944 -1.1989 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3634 -0.8899 -0.5142 27 1 1.6509 2.1340 0.0007 28 1 4.1084 2.1496 0.0101 29 1 8.1594 0.4209 1.0099 30 1 8.2642 0.7011 -0.7448 31 1 8.0660 1.8774 -3.2485 32 1 10.4037 1.6299 1.1774 33 1 10.4945 3.3996 0.6651 34 1 8.5239 3.9363 2.1703 35 1 8.4324 2.1671 2.6826 36 1 1.6506 -2.1320 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079168462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:10 Heat of formation + Delta-G solvation = -82.874135 kcal Electronic energy + Delta-G solvation = -21427.533872 eV Core-core repulsion = 17985.142871 eV Total energy + Delta-G solvation = -3442.391001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -48.73848 -39.77895 -38.63196 -36.69701 -34.97982 -32.95169 -32.17240 -30.63554 -28.06794 -26.34225 -25.32385 -22.77191 -22.63853 -21.25537 -20.37431 -19.18832 -17.50071 -16.88924 -16.63933 -16.14351 -15.74620 -15.47539 -15.11710 -14.55027 -14.41457 -14.08065 -13.79123 -13.67696 -13.36079 -13.05130 -12.40380 -12.17491 -12.11913 -11.79810 -11.63902 -11.47075 -11.27732 -11.01514 -10.82436 -10.50672 -10.35150 -9.94801 -9.51270 -9.43219 -9.08009 -8.99827 -8.78950 -8.68270 -8.15046 -6.04811 -4.10955 0.71785 1.18220 2.95005 3.24471 3.33622 3.36919 3.41543 3.79431 4.17847 4.34718 4.58094 4.70306 4.93276 5.02120 5.11756 5.29760 5.35320 5.36851 5.51873 5.60046 5.87963 5.96702 6.01628 6.08045 6.20542 6.24170 6.36618 6.46048 6.62452 6.63727 6.77598 6.81724 6.96555 7.24207 7.41100 7.51124 7.88908 8.31942 8.60058 8.85547 9.49610 10.96113 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.005841 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.920136 B = 4792.868956 C = 5550.073727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 C -0.148 4.148 4 C -0.026 4.026 5 C -0.155 4.155 6 C 0.496 3.504 7 O -0.512 6.512 8 O -0.316 6.316 9 C 0.117 3.883 10 C 0.047 3.953 11 C -0.482 4.482 12 H 0.063 0.937 13 C 0.074 3.926 14 N -0.882 5.882 15 Si 0.895 3.105 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.282 1.282 19 C -0.192 4.192 20 C -0.209 4.209 21 C 0.161 3.839 22 F -0.117 7.117 23 C -0.175 4.175 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.136 0.864 28 H 0.155 0.845 29 H 0.027 0.973 30 H 0.115 0.885 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.838 -3.121 4.306 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.166 4.166 4 C -0.044 4.044 5 C -0.157 4.157 6 C 0.340 3.660 7 O -0.403 6.403 8 O -0.231 6.231 9 C 0.045 3.955 10 C 0.047 3.953 11 C -0.519 4.519 12 H 0.081 0.919 13 C -0.129 4.129 14 N -0.519 5.519 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.207 1.207 19 C -0.230 4.230 20 C -0.247 4.247 21 C 0.141 3.859 22 F -0.095 7.095 23 C -0.194 4.194 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.154 0.846 28 H 0.172 0.828 29 H 0.045 0.955 30 H 0.132 0.868 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.640 -3.567 4.094 14.681 hybrid contribution 0.033 0.287 -0.643 0.705 sum -13.607 -3.280 3.451 14.416 Atomic orbital electron populations 1.20869 0.90266 1.03364 1.02870 1.19952 0.96501 0.92226 0.94798 1.21106 0.93899 0.97999 1.03610 1.21575 0.93963 0.97841 0.91070 1.19460 0.91692 0.93479 1.11117 1.20729 0.87893 0.83139 0.74214 1.90813 1.70024 1.33474 1.46022 1.86516 1.24373 1.31011 1.81150 1.22855 0.73636 0.96809 1.02245 1.18900 0.92951 0.93033 0.90439 1.20455 1.45145 0.93976 0.92348 0.91882 1.24947 0.94551 0.95236 0.98145 1.69789 1.46959 1.21260 1.13925 0.86491 0.79388 0.81372 0.80536 1.19586 1.21037 1.20747 1.22970 0.92771 1.00958 1.06350 1.22969 1.05833 1.00367 0.95510 1.17705 0.89746 0.80583 0.97859 1.91586 1.80495 1.44648 1.92768 1.20891 0.91417 0.99593 1.07485 0.90451 0.90832 0.91116 0.84640 0.82783 0.95515 0.86775 0.92704 0.91453 0.89745 0.90281 0.91317 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.00 36.00 0.36 -0.47 16 2 C -0.03 -0.38 5.88 -104.55 -0.62 -0.99 16 3 C -0.15 -1.77 9.67 -39.64 -0.38 -2.15 16 4 C -0.03 -0.41 9.61 -39.18 -0.38 -0.79 16 5 C -0.16 -2.86 5.88 -104.93 -0.62 -3.48 16 6 C 0.50 11.27 7.88 34.54 0.27 11.54 16 7 O -0.51 -12.79 15.14 -19.26 -0.29 -13.08 16 8 O -0.32 -7.66 9.11 -40.57 -0.37 -8.03 16 9 C 0.12 2.95 4.52 37.15 0.17 3.12 16 10 C 0.05 1.18 2.14 -155.66 -0.33 0.84 16 11 C -0.48 -12.89 8.77 -34.44 -0.30 -13.20 16 12 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 13 C 0.07 1.99 5.19 -17.82 -0.09 1.90 16 14 N -0.88 -24.61 10.70 55.43 0.59 -24.02 16 15 Si 0.89 20.70 29.55 -169.99 -5.02 15.68 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.19 -4.30 9.96 -26.70 -0.27 -4.57 16 20 C -0.21 -4.53 9.92 -26.69 -0.26 -4.79 16 21 C 0.16 2.66 7.28 -38.94 -0.28 2.38 16 22 F -0.12 -2.15 15.58 2.25 0.04 -2.12 16 23 C -0.18 -2.18 9.66 -39.57 -0.38 -2.56 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.07 0.43 8.08 -51.92 -0.42 0.01 16 27 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 28 H 0.15 2.45 7.63 -52.49 -0.40 2.05 16 29 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 30 H 0.11 3.18 6.04 -51.93 -0.31 2.86 16 31 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 318.60 15.07 4.80 4.80 Total: -1.00 -30.56 318.60 -7.85 -38.41 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.48 Total: 1.57 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.12 Total: -13.21 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.59 Total: -24.02 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.66 Total: -21.11 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.56 -7.85 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.466 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds