Wall clock time and date at job start Tue Mar 31 2020 00:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38479 * 119.82246 * 2 1 4 4 C 1.37841 * 120.22493 * 179.74529 * 3 2 1 5 5 C 1.39712 * 119.86795 * 0.57455 * 4 3 2 6 6 C 1.47572 * 120.17003 * 179.70026 * 5 4 3 7 7 O 1.21488 * 119.99919 * 186.17329 * 6 5 4 8 8 O 1.34728 * 119.99499 * 5.89792 * 6 5 4 9 9 C 1.45205 * 116.99844 * 176.31592 * 8 6 5 10 10 C 1.52991 * 109.47450 * 184.71346 * 9 8 6 11 11 C 1.50705 * 115.54918 * 306.67114 * 10 9 8 12 12 H 1.07996 * 119.99836 * 144.81474 * 11 10 9 13 13 C 1.37881 * 119.99844 * 324.81960 * 11 10 9 14 14 N 1.31506 * 119.99799 * 350.92618 * 13 11 10 15 15 Si 1.86801 * 119.99970 * 170.93481 * 13 11 10 16 16 H 1.48498 * 109.47127 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47256 * 119.99474 * 15 13 11 18 18 H 1.48500 * 109.46950 * 239.99608 * 15 13 11 19 19 C 1.52996 * 117.50192 * 161.00181 * 10 9 8 20 20 C 1.53003 * 117.50208 * 92.34133 * 10 9 8 21 21 C 1.39875 * 119.66116 * 359.42981 * 5 4 3 22 22 F 1.35104 * 120.11808 * 180.29723 * 21 5 4 23 23 C 1.38204 * 119.82824 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47171 * 269.97947 * 1 2 3 25 25 H 1.08992 * 109.47581 * 29.97862 * 1 2 3 26 26 H 1.09008 * 109.47076 * 149.97991 * 1 2 3 27 27 H 1.08001 * 119.88554 * 0.04385 * 3 2 1 28 28 H 1.07998 * 120.06391 * 180.29672 * 4 3 2 29 29 H 1.09005 * 109.46653 * 304.71439 * 9 8 6 30 30 H 1.09005 * 109.47115 * 64.70943 * 9 8 6 31 31 H 0.97010 * 120.00060 * 185.02299 * 14 13 11 32 32 H 1.09003 * 117.49802 * 359.97438 * 19 10 9 33 33 H 1.09007 * 117.50245 * 145.02166 * 19 10 9 34 34 H 1.09000 * 117.49714 * 214.98037 * 20 10 9 35 35 H 1.08995 * 117.49488 * 359.97305 * 20 10 9 36 36 H 1.07996 * 119.93653 * 359.97073 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2014 0.0000 4 6 3.5740 1.2111 0.0053 5 6 4.2783 0.0045 -0.0015 6 6 5.7540 0.0071 -0.0025 7 8 6.3632 -1.0372 -0.1215 8 8 6.4256 1.1684 0.1229 9 6 7.8735 1.0878 0.1964 10 6 8.4495 2.4817 0.4534 11 6 8.0075 3.5549 -0.5079 12 1 7.8567 4.5652 -0.1573 13 6 7.7957 3.2469 -1.8351 14 7 8.1474 2.0685 -2.3009 15 14 7.0093 4.5037 -2.9716 16 1 6.7084 5.7415 -2.2082 17 1 7.9438 4.8208 -4.0812 18 1 5.7500 3.9478 -3.5286 19 6 9.8758 2.5670 1.0003 20 6 8.6869 2.8909 1.9084 21 6 3.5775 -1.2061 -0.0015 22 9 4.2493 -2.3783 -0.0019 23 6 2.1944 -1.1989 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3634 -0.8899 -0.5142 27 1 1.6509 2.1340 0.0007 28 1 4.1084 2.1496 0.0101 29 1 8.1594 0.4209 1.0099 30 1 8.2642 0.7011 -0.7448 31 1 8.0660 1.8774 -3.2485 32 1 10.4037 1.6299 1.1774 33 1 10.4945 3.3996 0.6651 34 1 8.5239 3.9363 2.1703 35 1 8.4324 2.1671 2.6826 36 1 1.6506 -2.1320 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079168462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:08 Heat of formation + Delta-G solvation = -98.348301 kcal Electronic energy + Delta-G solvation = -21428.204883 eV Core-core repulsion = 17985.142871 eV Total energy + Delta-G solvation = -3443.062011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -50.05808 -41.38950 -39.91943 -38.54120 -36.83766 -34.20202 -33.99181 -31.72257 -29.29705 -28.01067 -27.28871 -23.94669 -23.86270 -23.01671 -21.81059 -21.13942 -19.01286 -18.65376 -17.98660 -17.61314 -17.40017 -16.99063 -16.75946 -16.39468 -15.84717 -15.32038 -15.16990 -14.83605 -14.46000 -14.41147 -13.98706 -13.83664 -13.53061 -13.07509 -12.89039 -12.81162 -12.78256 -12.67941 -12.32276 -12.30045 -12.15565 -11.74328 -11.44930 -11.28522 -11.05781 -10.69650 -10.11550 -10.06943 -9.81185 -8.06994 -6.19701 -0.51195 0.09739 1.40336 1.43387 1.47299 1.54907 1.77838 2.41565 2.52257 3.01008 3.03360 3.47392 3.58133 3.75070 3.84803 4.09971 4.15620 4.18235 4.32295 4.52533 4.59128 4.66296 4.72888 4.87810 4.89905 4.91198 4.97771 5.01798 5.12941 5.16664 5.27707 5.37377 5.40777 5.49387 5.67203 5.76707 5.80723 6.31100 6.73778 6.86016 7.43353 8.92452 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.005841 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.920136 B = 4792.868956 C = 5550.073727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.013 4.013 3 C -0.136 4.136 4 C -0.036 4.036 5 C -0.193 4.193 6 C 0.489 3.511 7 O -0.550 6.550 8 O -0.325 6.325 9 C 0.126 3.874 10 C 0.007 3.993 11 C -0.494 4.494 12 H 0.061 0.939 13 C 0.028 3.972 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.260 1.260 17 H -0.283 1.283 18 H -0.281 1.281 19 C -0.186 4.186 20 C -0.184 4.184 21 C 0.138 3.862 22 F -0.137 7.137 23 C -0.163 4.163 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.173 0.827 28 H 0.142 0.858 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.259 0.741 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.205 -2.026 4.860 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.013 4.013 3 C -0.153 4.153 4 C -0.054 4.054 5 C -0.195 4.195 6 C 0.336 3.664 7 O -0.444 6.444 8 O -0.240 6.240 9 C 0.053 3.947 10 C 0.007 3.993 11 C -0.531 4.531 12 H 0.079 0.921 13 C -0.172 4.172 14 N -0.550 5.550 15 Si 0.779 3.221 16 H -0.184 1.184 17 H -0.209 1.209 18 H -0.207 1.207 19 C -0.224 4.224 20 C -0.222 4.222 21 C 0.118 3.882 22 F -0.115 7.115 23 C -0.182 4.182 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.190 0.810 28 H 0.159 0.841 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -17.014 -2.453 4.666 17.812 hybrid contribution 0.965 -0.065 -0.765 1.233 sum -16.049 -2.518 3.901 16.707 Atomic orbital electron populations 1.21024 0.86507 1.05116 1.04585 1.20513 0.98863 0.90919 0.91051 1.21515 0.92186 1.00216 1.01408 1.21571 0.95689 0.96160 0.91999 1.19404 0.88960 0.95694 1.15457 1.21623 0.89840 0.82140 0.72838 1.90764 1.71216 1.34316 1.48055 1.86517 1.23841 1.32102 1.81502 1.22578 0.74493 0.97177 1.00497 1.19036 0.95038 0.92607 0.92623 1.20693 1.45171 0.94262 0.93006 0.92084 1.25669 0.94989 0.96911 0.99604 1.69965 1.48282 1.22962 1.13791 0.85559 0.78327 0.79512 0.78654 1.18387 1.20876 1.20676 1.22981 0.92061 1.01566 1.05785 1.22984 1.03910 1.01339 0.93928 1.18112 0.91293 0.79332 0.99457 1.91528 1.81280 1.45545 1.93168 1.21294 0.89394 1.01865 1.05630 0.88421 0.89067 0.89527 0.80963 0.84062 0.95276 0.90113 0.93178 0.90340 0.89624 0.89197 0.89696 0.81061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.00 71.23 0.71 -0.25 16 2 C -0.01 -0.23 5.88 -19.82 -0.12 -0.35 16 3 C -0.14 -2.79 9.67 22.23 0.22 -2.58 16 4 C -0.04 -1.10 9.61 22.53 0.22 -0.89 16 5 C -0.19 -7.34 5.88 -20.06 -0.12 -7.46 16 6 C 0.49 23.58 7.88 70.28 0.55 24.13 16 7 O -0.55 -29.41 15.14 19.87 0.30 -29.11 16 8 O -0.33 -16.58 9.11 -56.38 -0.51 -17.09 16 9 C 0.13 6.64 4.52 71.98 0.33 6.96 16 10 C 0.01 0.37 2.14 -52.93 -0.11 0.26 16 11 C -0.49 -26.79 8.77 25.60 0.22 -26.56 16 12 H 0.06 3.24 7.83 -2.91 -0.02 3.22 16 13 C 0.03 1.53 5.19 84.66 0.44 1.97 16 14 N -0.91 -52.84 10.70 21.45 0.23 -52.61 16 15 Si 0.95 42.89 29.55 68.60 2.03 44.91 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 C -0.19 -8.28 9.96 30.62 0.30 -7.98 16 20 C -0.18 -7.81 9.92 30.62 0.30 -7.51 16 21 C 0.14 4.59 7.28 22.69 0.17 4.75 16 22 F -0.14 -5.25 15.58 44.97 0.70 -4.55 16 23 C -0.16 -3.63 9.66 22.28 0.22 -3.42 16 24 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 25 H 0.09 0.54 8.08 -2.39 -0.02 0.52 16 26 H 0.09 0.54 8.08 -2.38 -0.02 0.52 16 27 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.14 4.60 7.63 -2.91 -0.02 4.58 16 29 H 0.03 1.46 8.03 -2.38 -0.02 1.44 16 30 H 0.08 4.79 6.04 -2.38 -0.01 4.78 16 31 H 0.26 14.49 8.32 -92.70 -0.77 13.72 16 32 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.09 3.75 8.14 -2.38 -0.02 3.73 16 34 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -70.43 318.60 7.16 -63.27 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.09 Total: 14.09 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 3.33 Total: -18.92 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.23 Total: -52.61 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.21 Total: -46.20 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.70 Total: -4.55 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.43 7.16 -63.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.079 kcal (2) G-P(sol) polarization free energy of solvation -70.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds