Wall clock time and date at job start Tue Mar 31 2020 00:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86801 * 120.00137 * 2 1 4 4 H 1.48497 * 109.47306 * 95.01703 * 3 2 1 5 5 H 1.48498 * 109.46941 * 215.01752 * 3 2 1 6 6 H 1.48503 * 109.47041 * 335.01926 * 3 2 1 7 7 C 1.40048 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00177 * 7.92646 * 7 2 1 9 9 C 1.46377 * 119.99580 * 187.91823 * 7 2 1 10 10 O 1.21684 * 120.00160 * 14.10286 * 9 7 2 11 11 N 1.34780 * 119.99686 * 194.09892 * 9 7 2 12 12 C 1.46965 * 120.59467 * 354.15137 * 11 9 7 13 13 C 1.53814 * 108.39795 * 124.75910 * 12 11 9 14 14 N 1.46961 * 108.57940 * 49.63564 * 13 12 11 15 15 C 1.34780 * 120.59165 * 124.67062 * 14 13 12 16 16 O 1.21699 * 119.99968 * 186.61179 * 15 14 13 17 17 C 1.46653 * 120.00202 * 6.61186 * 15 14 13 18 18 C 1.36545 * 125.98893 * 187.28772 * 17 15 14 19 19 C 1.40371 * 106.70596 * 179.91037 * 18 17 15 20 20 C 1.35127 * 107.11408 * 0.35776 * 19 18 17 21 21 O 1.33932 * 108.77222 * 359.77906 * 20 19 18 22 22 C 1.46967 * 118.81619 * 304.64661 * 14 13 12 23 23 C 1.46967 * 120.59486 * 174.43146 * 11 9 7 24 24 H 0.96996 * 119.99991 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.61035 * 244.53922 * 12 11 9 26 26 H 1.08997 * 109.60952 * 5.05460 * 12 11 9 27 27 H 1.09004 * 109.74009 * 289.84855 * 13 12 11 28 28 H 1.09001 * 109.53200 * 169.30871 * 13 12 11 29 29 H 1.07994 * 126.64295 * 0.04565 * 18 17 15 30 30 H 1.08002 * 126.43663 * 180.15262 * 19 18 17 31 31 H 1.08006 * 125.61506 * 179.77890 * 20 19 18 32 32 H 1.09005 * 109.60861 * 295.48735 * 22 14 13 33 33 H 1.08992 * 109.75005 * 175.05139 * 22 14 13 34 34 H 1.08999 * 109.60597 * 354.94792 * 23 11 9 35 35 H 1.08998 * 109.60895 * 115.45549 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5944 1.9852 1.3947 5 1 3.4813 1.4730 -0.8034 6 1 1.3893 2.6810 -0.5913 7 6 2.0070 -1.2129 0.0005 8 1 1.4747 -2.1438 -0.1280 9 6 3.4603 -1.2188 0.1752 10 8 4.0295 -0.2192 0.5720 11 7 4.1679 -2.3315 -0.1035 12 6 3.4846 -3.5828 -0.4601 13 6 4.0289 -4.0639 -1.8159 14 7 5.4975 -4.0492 -1.7627 15 6 6.2051 -5.1619 -2.0414 16 8 7.4111 -5.1729 -1.8781 17 6 5.5220 -6.3594 -2.5413 18 6 6.0891 -7.5872 -2.7292 19 6 5.0766 -8.4294 -3.2149 20 6 3.9520 -7.6861 -3.3086 21 8 4.2243 -6.4394 -2.9019 22 6 6.1807 -2.7994 -1.4006 23 6 5.6365 -2.3169 -0.0503 24 1 -0.4850 0.8400 0.0004 25 1 3.6789 -4.3362 0.3032 26 1 2.4120 -3.4047 -0.5372 27 1 3.6849 -3.3986 -2.6078 28 1 3.6799 -5.0782 -2.0095 29 1 7.1170 -7.8583 -2.5388 30 1 5.1783 -9.4741 -3.4693 31 1 2.9917 -8.0392 -3.6545 32 1 5.9898 -2.0440 -2.1630 33 1 7.2533 -2.9758 -1.3208 34 1 5.9854 -1.3026 0.1433 35 1 5.9805 -2.9821 0.7416 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:39 Heat of formation + Delta-G solvation = -36.757794 kcal Electronic energy + Delta-G solvation = -21769.090983 eV Core-core repulsion = 18348.619698 eV Total energy + Delta-G solvation = -3420.471285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.89630 -39.87787 -38.28577 -36.30279 -33.58043 -33.05164 -32.91620 -31.46718 -29.88253 -27.67282 -26.37521 -23.83740 -23.25966 -21.92514 -21.59872 -20.33255 -19.07943 -17.73325 -16.94126 -16.53048 -16.44531 -15.97810 -15.71384 -14.90250 -14.85428 -14.51607 -14.11447 -14.03815 -13.36934 -13.26381 -13.07061 -12.86614 -12.52161 -12.24379 -12.13293 -11.84947 -11.20110 -11.14027 -11.00787 -10.81234 -10.44214 -10.25029 -10.15420 -9.55121 -9.09297 -8.99698 -8.72008 -7.98981 -7.58061 -6.68856 -4.92072 0.93757 2.18759 2.48719 2.99125 3.14432 3.40850 3.45974 3.68916 4.09534 4.15794 4.36227 4.50600 4.70796 4.77333 5.15324 5.19827 5.30867 5.39180 5.43827 5.53845 5.59187 5.64165 5.74053 5.83177 6.06309 6.13257 6.17371 6.20630 6.33649 6.52180 6.71039 6.96254 7.34044 7.50306 7.77796 7.99914 8.20812 8.62251 9.03748 9.93382 10.31515 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.004779 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.822887 B = 5857.019292 C = 6592.926219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.102 3.898 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.321 1.321 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.554 3.446 10 O -0.613 6.613 11 N -0.634 5.634 12 C 0.108 3.892 13 C 0.079 3.921 14 N -0.595 5.595 15 C 0.598 3.402 16 O -0.531 6.531 17 C -0.071 4.071 18 C -0.124 4.124 19 C -0.226 4.226 20 C -0.015 4.015 21 O -0.155 6.155 22 C 0.099 3.901 23 C 0.106 3.894 24 H 0.283 0.717 25 H 0.052 0.948 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.209 0.791 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 -14.899 -7.262 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.116 4.116 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.253 1.253 7 C -0.569 4.569 8 H 0.109 0.891 9 C 0.364 3.636 10 O -0.505 6.505 11 N -0.368 5.368 12 C -0.016 4.016 13 C -0.044 4.044 14 N -0.327 5.327 15 C 0.386 3.614 16 O -0.410 6.410 17 C -0.123 4.123 18 C -0.144 4.144 19 C -0.245 4.245 20 C -0.084 4.084 21 O -0.051 6.051 22 C -0.024 4.024 23 C -0.019 4.019 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.132 0.868 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.176 0.824 30 H 0.172 0.828 31 H 0.225 0.775 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.522 -14.063 -6.936 16.983 hybrid contribution 0.162 0.213 -0.087 0.282 sum 6.684 -13.850 -7.023 16.906 Atomic orbital electron populations 1.69549 1.07931 1.30111 1.38013 1.25759 0.94744 1.02052 0.89036 0.85230 0.77739 0.77345 0.79785 1.20431 1.18925 1.25285 1.20754 0.88768 0.95732 1.51640 0.89084 1.18366 0.88423 0.80241 0.76618 1.90211 1.72338 1.33470 1.54511 1.47693 1.04197 1.11054 1.73900 1.21987 0.99823 0.86425 0.93409 1.22841 0.78136 1.03566 0.99820 1.48012 1.07901 1.10189 1.66582 1.16739 0.85952 0.80813 0.77863 1.90846 1.12930 1.82364 1.54858 1.22125 0.82473 0.97363 1.10328 1.21948 1.01127 0.91275 1.00098 1.21834 0.92942 1.01681 1.08054 1.24571 1.00923 0.82124 1.00791 1.84291 1.26507 1.30892 1.63360 1.22171 0.98036 0.84250 0.97908 1.21616 0.82848 1.02703 0.94687 0.90709 0.92999 0.86846 0.90227 0.87507 0.82397 0.82764 0.77454 0.90713 0.88415 0.88207 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.75 13.92 55.55 0.77 -21.98 16 2 C 0.10 2.83 5.52 -17.36 -0.10 2.73 16 3 Si 0.97 24.94 25.89 -169.99 -4.40 20.54 16 4 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.26 -7.12 6.60 56.52 0.37 -6.74 16 6 H -0.32 -7.87 7.11 56.52 0.40 -7.47 16 7 C -0.53 -14.38 9.37 -35.63 -0.33 -14.71 16 8 H 0.09 2.39 5.95 -52.49 -0.31 2.08 16 9 C 0.55 14.25 7.30 -12.98 -0.09 14.15 16 10 O -0.61 -17.31 11.76 5.20 0.06 -17.25 16 11 N -0.63 -13.24 2.94 -173.87 -0.51 -13.75 16 12 C 0.11 1.87 6.54 -3.36 -0.02 1.85 16 13 C 0.08 1.17 6.33 -3.37 -0.02 1.15 16 14 N -0.60 -9.26 2.95 -173.76 -0.51 -9.77 16 15 C 0.60 9.36 7.65 -12.86 -0.10 9.26 16 16 O -0.53 -9.44 16.30 5.19 0.08 -9.36 16 17 C -0.07 -0.94 6.78 -36.80 -0.25 -1.19 16 18 C -0.12 -1.40 10.63 -39.39 -0.42 -1.82 16 19 C -0.23 -1.97 10.87 -39.89 -0.43 -2.40 16 20 C -0.01 -0.12 12.08 29.63 0.36 0.23 16 21 O -0.15 -1.78 7.22 4.98 0.04 -1.74 16 22 C 0.10 1.57 6.59 -3.59 -0.02 1.55 16 23 C 0.11 1.92 6.58 -3.59 -0.02 1.90 16 24 H 0.28 7.19 8.29 -40.82 -0.34 6.85 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.11 2.06 5.33 -51.93 -0.28 1.78 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.11 1.39 4.13 -53.56 -0.22 1.16 16 29 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.21 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.47 7.00 -51.93 -0.36 1.11 16 34 H 0.10 1.93 7.02 -51.93 -0.36 1.57 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 292.48 15.07 4.41 4.41 Total: -1.00 -33.07 292.48 -5.18 -38.25 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -3.66 Total: -2.03 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -1.46 Total: 12.68 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.25 Total: -45.50 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: 0.18 Total: -28.35 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -4.40 Total: 20.54 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.07 -5.18 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.494 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds