Wall clock time and date at job start Tue Mar 31 2020 00:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86801 * 120.00137 * 2 1 4 4 H 1.48497 * 109.47306 * 95.01703 * 3 2 1 5 5 H 1.48498 * 109.46941 * 215.01752 * 3 2 1 6 6 H 1.48503 * 109.47041 * 335.01926 * 3 2 1 7 7 C 1.40048 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00177 * 7.92646 * 7 2 1 9 9 C 1.46377 * 119.99580 * 187.91823 * 7 2 1 10 10 O 1.21684 * 120.00160 * 14.10286 * 9 7 2 11 11 N 1.34780 * 119.99686 * 194.09892 * 9 7 2 12 12 C 1.46965 * 120.59467 * 354.15137 * 11 9 7 13 13 C 1.53814 * 108.39795 * 124.75910 * 12 11 9 14 14 N 1.46961 * 108.57940 * 49.63564 * 13 12 11 15 15 C 1.34780 * 120.59165 * 124.67062 * 14 13 12 16 16 O 1.21699 * 119.99968 * 186.61179 * 15 14 13 17 17 C 1.46653 * 120.00202 * 6.61186 * 15 14 13 18 18 C 1.36545 * 125.98893 * 187.28772 * 17 15 14 19 19 C 1.40371 * 106.70596 * 179.91037 * 18 17 15 20 20 C 1.35127 * 107.11408 * 0.35776 * 19 18 17 21 21 O 1.33932 * 108.77222 * 359.77906 * 20 19 18 22 22 C 1.46967 * 118.81619 * 304.64661 * 14 13 12 23 23 C 1.46967 * 120.59486 * 174.43146 * 11 9 7 24 24 H 0.96996 * 119.99991 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.61035 * 244.53922 * 12 11 9 26 26 H 1.08997 * 109.60952 * 5.05460 * 12 11 9 27 27 H 1.09004 * 109.74009 * 289.84855 * 13 12 11 28 28 H 1.09001 * 109.53200 * 169.30871 * 13 12 11 29 29 H 1.07994 * 126.64295 * 0.04565 * 18 17 15 30 30 H 1.08002 * 126.43663 * 180.15262 * 19 18 17 31 31 H 1.08006 * 125.61506 * 179.77890 * 20 19 18 32 32 H 1.09005 * 109.60861 * 295.48735 * 22 14 13 33 33 H 1.08992 * 109.75005 * 175.05139 * 22 14 13 34 34 H 1.08999 * 109.60597 * 354.94792 * 23 11 9 35 35 H 1.08998 * 109.60895 * 115.45549 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5944 1.9852 1.3947 5 1 3.4813 1.4730 -0.8034 6 1 1.3893 2.6810 -0.5913 7 6 2.0070 -1.2129 0.0005 8 1 1.4747 -2.1438 -0.1280 9 6 3.4603 -1.2188 0.1752 10 8 4.0295 -0.2192 0.5720 11 7 4.1679 -2.3315 -0.1035 12 6 3.4846 -3.5828 -0.4601 13 6 4.0289 -4.0639 -1.8159 14 7 5.4975 -4.0492 -1.7627 15 6 6.2051 -5.1619 -2.0414 16 8 7.4111 -5.1729 -1.8781 17 6 5.5220 -6.3594 -2.5413 18 6 6.0891 -7.5872 -2.7292 19 6 5.0766 -8.4294 -3.2149 20 6 3.9520 -7.6861 -3.3086 21 8 4.2243 -6.4394 -2.9019 22 6 6.1807 -2.7994 -1.4006 23 6 5.6365 -2.3169 -0.0503 24 1 -0.4850 0.8400 0.0004 25 1 3.6789 -4.3362 0.3032 26 1 2.4120 -3.4047 -0.5372 27 1 3.6849 -3.3986 -2.6078 28 1 3.6799 -5.0782 -2.0095 29 1 7.1170 -7.8583 -2.5388 30 1 5.1783 -9.4741 -3.4693 31 1 2.9917 -8.0392 -3.6545 32 1 5.9898 -2.0440 -2.1630 33 1 7.2533 -2.9758 -1.3208 34 1 5.9854 -1.3026 0.1433 35 1 5.9805 -2.9821 0.7416 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:38 Heat of formation + Delta-G solvation = -59.910433 kcal Electronic energy + Delta-G solvation = -21770.094957 eV Core-core repulsion = 18348.619698 eV Total energy + Delta-G solvation = -3421.475258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.71082 -41.20323 -39.95008 -37.88421 -35.05804 -34.93545 -34.01126 -32.80951 -30.83781 -29.36500 -28.04288 -25.15461 -24.53307 -22.95658 -22.70249 -21.57891 -20.51281 -19.16217 -18.35075 -18.01501 -17.54128 -17.36440 -17.07155 -16.56616 -16.18161 -16.12166 -15.62110 -15.26822 -14.69435 -14.52199 -14.22061 -14.12870 -14.03054 -13.92420 -13.54820 -13.33819 -13.01865 -12.74858 -12.45391 -12.33943 -12.30197 -11.54626 -11.38828 -11.22191 -11.00578 -10.27445 -10.02767 -9.66957 -9.21137 -8.79510 -7.01531 0.02365 1.32042 1.37873 1.45401 1.52361 1.60874 1.92270 2.03004 2.11434 2.34889 2.65938 3.28723 3.38863 3.84077 3.87641 3.97128 4.13139 4.13438 4.23350 4.36038 4.42530 4.59548 4.62815 4.76297 4.79219 4.93334 4.94381 5.06785 5.07613 5.30906 5.47276 5.65479 5.85479 5.91967 6.16660 6.21642 6.60087 6.82665 7.07914 7.93038 8.25125 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.004779 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.822887 B = 5857.019292 C = 6592.926219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.074 3.926 3 Si 1.006 2.994 4 H -0.294 1.294 5 H -0.285 1.285 6 H -0.300 1.300 7 C -0.548 4.548 8 H 0.093 0.907 9 C 0.550 3.450 10 O -0.644 6.644 11 N -0.634 5.634 12 C 0.106 3.894 13 C 0.091 3.909 14 N -0.600 5.600 15 C 0.599 3.401 16 O -0.561 6.561 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.231 4.231 20 C 0.006 3.994 21 O -0.167 6.167 22 C 0.108 3.892 23 C 0.107 3.893 24 H 0.292 0.708 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.160 0.840 30 H 0.185 0.815 31 H 0.253 0.747 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 -17.146 -8.412 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.142 4.142 3 Si 0.839 3.161 4 H -0.222 1.222 5 H -0.212 1.212 6 H -0.229 1.229 7 C -0.584 4.584 8 H 0.111 0.889 9 C 0.359 3.641 10 O -0.538 6.538 11 N -0.367 5.367 12 C -0.017 4.017 13 C -0.031 4.031 14 N -0.331 5.331 15 C 0.389 3.611 16 O -0.443 6.443 17 C -0.162 4.162 18 C -0.139 4.139 19 C -0.250 4.250 20 C -0.063 4.063 21 O -0.063 6.063 22 C -0.015 4.015 23 C -0.017 4.017 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.149 0.851 29 H 0.177 0.823 30 H 0.202 0.798 31 H 0.269 0.731 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.104 -16.344 -8.106 19.238 hybrid contribution 0.299 0.718 0.242 0.815 sum 6.403 -15.626 -7.864 18.629 Atomic orbital electron populations 1.69542 1.08150 1.31089 1.38764 1.26166 0.95235 1.03503 0.89332 0.84677 0.76482 0.76596 0.78327 1.22181 1.21206 1.22946 1.20982 0.89690 0.95861 1.51875 0.88946 1.18333 0.88405 0.81057 0.76350 1.90184 1.72868 1.35029 1.55715 1.47647 1.05418 1.11013 1.72590 1.22143 0.99158 0.85065 0.95366 1.22758 0.77692 1.04837 0.97856 1.48036 1.08091 1.10112 1.66859 1.17011 0.85724 0.81235 0.77087 1.90816 1.14186 1.83044 1.56231 1.21686 0.83655 0.96995 1.13825 1.22239 1.01847 0.91159 0.98608 1.22201 0.92073 1.02933 1.07786 1.25524 1.02440 0.80473 0.97820 1.84183 1.25638 1.32668 1.63839 1.21999 0.98481 0.84673 0.96364 1.21708 0.81123 1.02288 0.96547 0.89760 0.91512 0.87771 0.90636 0.85092 0.82252 0.79795 0.73110 0.90873 0.87497 0.89739 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.16 13.92 21.84 0.30 -45.85 16 2 C 0.07 4.09 5.52 85.30 0.47 4.56 16 3 Si 1.01 51.59 25.89 68.60 1.78 53.37 16 4 H -0.29 -15.75 7.11 99.48 0.71 -15.04 16 5 H -0.29 -15.52 6.60 99.48 0.66 -14.86 16 6 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.55 -29.68 9.37 24.83 0.23 -29.45 16 8 H 0.09 4.87 5.95 -2.91 -0.02 4.86 16 9 C 0.55 28.54 7.30 86.36 0.63 29.17 16 10 O -0.64 -36.84 11.76 -4.30 -0.05 -36.89 16 11 N -0.63 -26.36 2.94 -822.23 -2.42 -28.78 16 12 C 0.11 3.56 6.54 86.56 0.57 4.13 16 13 C 0.09 2.56 6.33 86.57 0.55 3.11 16 14 N -0.60 -18.09 2.95 -821.87 -2.42 -20.51 16 15 C 0.60 18.20 7.65 86.44 0.66 18.86 16 16 O -0.56 -19.78 16.30 -4.35 -0.07 -19.85 16 17 C -0.11 -2.73 6.78 24.07 0.16 -2.57 16 18 C -0.12 -2.40 10.63 22.39 0.24 -2.17 16 19 C -0.23 -3.12 10.87 22.07 0.24 -2.88 16 20 C 0.01 0.08 12.08 67.10 0.81 0.89 16 21 O -0.17 -3.34 7.22 -5.11 -0.04 -3.38 16 22 C 0.11 3.38 6.59 86.42 0.57 3.95 16 23 C 0.11 3.88 6.58 86.42 0.57 4.45 16 24 H 0.29 14.63 8.29 -92.71 -0.77 13.86 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.10 3.72 5.33 -2.39 -0.01 3.70 16 27 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.13 3.11 4.13 -28.26 -0.12 2.99 16 29 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 31 H 0.25 0.63 8.06 -2.91 -0.02 0.61 16 32 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.11 3.18 7.00 -2.39 -0.02 3.16 16 34 H 0.08 3.33 7.02 -2.39 -0.02 3.31 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.30 292.48 3.75 -67.55 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 0.97 Total: 2.29 kcal Atomic # 6 Polarization: 26.35 SS G_CDS: 5.70 Total: 32.05 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -4.54 Total: -95.14 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -0.16 Total: -60.11 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.78 Total: 53.37 kcal Total: -71.30 3.75 -67.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.639 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds