Wall clock time and date at job start Tue Mar 31 2020 00:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38382 * 119.92307 * 2 1 4 4 C 1.38343 * 120.28725 * 180.02562 * 3 2 1 5 5 C 1.37973 * 120.14591 * 0.02562 * 4 3 2 6 6 N 1.48015 * 120.07267 * 179.97438 * 5 4 3 7 7 O 1.21797 * 120.00112 * 4.25397 * 6 5 4 8 8 O 1.21806 * 119.99752 * 184.24831 * 6 5 4 9 9 C 1.39560 * 119.85559 * 359.97438 * 5 4 3 10 10 C 1.47847 * 120.14660 * 179.97438 * 9 5 4 11 11 O 1.21548 * 120.00234 * 298.28597 * 10 9 5 12 12 N 1.34779 * 119.99663 * 118.55861 * 10 9 5 13 13 C 1.46506 * 120.00112 * 4.00544 * 12 10 9 14 14 C 1.46499 * 119.99892 * 184.00950 * 12 10 9 15 15 C 1.50698 * 109.47312 * 89.99648 * 14 12 10 16 16 H 1.08005 * 119.99984 * 0.02562 * 15 14 12 17 17 C 1.37877 * 119.99937 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00287 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99816 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47013 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46671 * 120.00589 * 19 17 15 22 22 H 1.48496 * 109.47113 * 240.00295 * 19 17 15 23 23 C 1.37939 * 119.92735 * 180.23945 * 2 1 3 24 24 H 1.09001 * 109.47429 * 89.99470 * 1 2 3 25 25 H 1.09001 * 109.46762 * 209.99773 * 1 2 3 26 26 H 1.09003 * 109.47316 * 329.99546 * 1 2 3 27 27 H 1.07997 * 119.85691 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.92590 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.46770 * 84.55223 * 13 12 10 30 30 H 1.08998 * 109.46839 * 204.54619 * 13 12 10 31 31 H 1.09000 * 109.47006 * 324.55297 * 13 12 10 32 32 H 1.09002 * 109.47191 * 209.99877 * 14 12 10 33 33 H 1.08998 * 109.46849 * 329.99767 * 14 12 10 34 34 H 0.96994 * 120.00124 * 179.97438 * 18 17 15 35 35 H 1.08004 * 120.07239 * 0.04464 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2812 0.0195 -0.0016 6 7 5.7613 0.0308 -0.0027 7 8 6.3623 1.0872 0.0755 8 8 6.3783 -1.0165 -0.0818 9 6 3.5911 -1.1936 -0.0016 10 6 4.3353 -2.4712 -0.0033 11 8 5.0711 -2.7447 -0.9313 12 7 4.1934 -3.3349 1.0215 13 6 3.2366 -3.0490 2.0935 14 6 4.9961 -4.5597 1.0636 15 6 6.2841 -4.2912 1.7984 16 1 6.4846 -3.3068 2.1948 17 6 7.2062 -5.3026 1.9655 18 7 6.9619 -6.5015 1.4832 19 14 8.8025 -4.9700 2.8770 20 1 8.8347 -3.5522 3.3175 21 1 8.8893 -5.8587 4.0635 22 1 9.9520 -5.2348 1.9750 23 6 2.1952 -1.1955 -0.0050 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6538 2.1326 -0.0004 28 1 4.1136 2.1475 -0.0009 29 1 2.2451 -3.3906 1.7961 30 1 3.5425 -3.5684 3.0016 31 1 3.2102 -1.9754 2.2801 32 1 4.4393 -5.3415 1.5801 33 1 5.2186 -4.8834 0.0468 34 1 7.6108 -7.2129 1.6005 35 1 1.6552 -2.1308 -0.0096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088147347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:09 Heat of formation + Delta-G solvation = -28.916902 kcal Electronic energy + Delta-G solvation = -21946.046141 eV Core-core repulsion = 18525.914862 eV Total energy + Delta-G solvation = -3420.131278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 4.30 seconds Orbital eigenvalues (eV) -43.29996 -41.32157 -39.76412 -37.59732 -36.69887 -34.81537 -34.40496 -32.76208 -29.86767 -29.47174 -27.62107 -26.29129 -25.61742 -24.18399 -22.87637 -21.02821 -19.90628 -19.45446 -18.73478 -18.58212 -18.10584 -17.37278 -16.90990 -16.34738 -15.92386 -15.84136 -15.46310 -14.82691 -14.62038 -14.25685 -13.96389 -13.57053 -13.36242 -13.31452 -13.13935 -13.09627 -12.89055 -12.68781 -12.58750 -12.58271 -12.29035 -12.21781 -12.10534 -11.71869 -10.93883 -10.65635 -10.40578 -10.29886 -9.53196 -8.24649 -6.37053 -1.36838 -0.26749 0.22198 0.40638 1.31781 1.36717 1.47227 1.58509 2.04567 2.29490 2.38596 3.05214 3.20533 3.31925 3.55404 3.76344 3.84594 4.01128 4.22709 4.44134 4.54883 4.62169 4.71345 4.75685 4.79432 4.88752 4.93693 5.11082 5.17737 5.23477 5.24910 5.50113 5.52509 5.77210 6.03881 6.42897 6.54243 6.70035 7.19096 7.35292 8.83040 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.005919 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.248410 B = 4729.493057 C = 5560.455843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.013 4.013 3 C -0.090 4.090 4 C -0.047 4.047 5 C -0.053 4.053 6 N 0.020 4.980 7 O -0.139 6.139 8 O -0.220 6.220 9 C -0.067 4.067 10 C 0.537 3.463 11 O -0.561 6.561 12 N -0.599 5.599 13 C 0.078 3.922 14 C 0.263 3.737 15 C -0.536 4.536 16 H 0.041 0.959 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.962 3.038 20 H -0.277 1.277 21 H -0.262 1.262 22 H -0.280 1.280 23 C -0.093 4.093 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.202 0.798 28 H 0.176 0.824 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.002 0.998 34 H 0.268 0.732 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.394 17.681 0.614 26.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.013 4.013 3 C -0.108 4.108 4 C -0.065 4.065 5 C -0.138 4.138 6 N 0.532 4.468 7 O -0.365 6.365 8 O -0.419 6.419 9 C -0.071 4.071 10 C 0.323 3.677 11 O -0.439 6.439 12 N -0.331 5.331 13 C -0.064 4.064 14 C 0.142 3.858 15 C -0.575 4.575 16 H 0.060 0.940 17 C -0.186 4.186 18 N -0.565 5.565 19 Si 0.787 3.213 20 H -0.202 1.202 21 H -0.186 1.186 22 H -0.206 1.206 23 C -0.112 4.112 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.123 0.877 27 H 0.219 0.781 28 H 0.194 0.806 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.624 17.174 0.140 26.839 hybrid contribution 2.247 -0.526 0.204 2.317 sum -18.377 16.648 0.344 24.799 Atomic orbital electron populations 1.21120 0.85738 1.05947 1.04889 1.20816 0.99537 0.91093 0.89888 1.21810 0.90694 1.00821 0.97459 1.21443 0.96121 0.95555 0.93427 1.21437 0.77391 0.97520 1.17402 1.44219 1.05208 1.00127 0.97198 1.94345 1.70938 1.20245 1.50964 1.94908 1.69607 1.20813 1.56568 1.19972 0.96279 0.91045 0.99828 1.18539 0.81622 0.84276 0.83254 1.90768 1.39051 1.76716 1.37374 1.48051 1.40300 1.22311 1.22418 1.21990 0.92405 1.01607 0.90358 1.18833 0.89675 0.81394 0.95917 1.21609 1.04032 0.96096 1.35754 0.94041 1.25733 1.01602 0.94684 0.96600 1.70026 1.37312 1.02502 1.46695 0.85456 0.79107 0.78158 0.78617 1.20151 1.18629 1.20577 1.21533 0.88625 1.01854 0.99156 0.88332 0.89434 0.87697 0.78100 0.80628 0.89235 0.90798 0.91295 0.94615 0.98035 0.92297 0.81753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.32 10.01 71.24 0.71 0.39 16 2 C -0.01 -0.15 5.87 -19.90 -0.12 -0.26 16 3 C -0.09 -0.91 9.69 22.33 0.22 -0.70 16 4 C -0.05 -0.91 9.55 22.23 0.21 -0.70 16 5 C -0.05 -1.77 6.87 36.63 0.25 -1.51 16 6 N 0.02 0.85 4.45 -45.85 -0.20 0.65 16 7 O -0.14 -5.48 18.46 18.89 0.35 -5.14 16 8 O -0.22 -12.12 15.07 26.10 0.39 -11.72 16 9 C -0.07 -2.24 4.42 -20.09 -0.09 -2.33 16 10 C 0.54 25.18 5.63 86.79 0.49 25.67 16 11 O -0.56 -32.74 14.49 18.95 0.27 -32.47 16 12 N -0.60 -27.43 2.86 -854.57 -2.44 -29.87 16 13 C 0.08 2.46 9.35 127.77 1.19 3.66 16 14 C 0.26 14.91 5.17 85.63 0.44 15.36 16 15 C -0.54 -33.24 9.39 25.60 0.24 -33.00 16 16 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 17 C 0.01 0.78 5.46 84.65 0.46 1.25 16 18 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 19 Si 0.96 48.37 29.54 68.60 2.03 50.40 16 20 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 23 C -0.09 -1.90 7.97 22.53 0.18 -1.72 16 24 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.09 0.18 8.08 -2.39 -0.02 0.16 16 26 H 0.10 -0.18 8.08 -2.39 -0.02 -0.20 16 27 H 0.20 0.03 8.06 -2.91 -0.02 0.01 16 28 H 0.18 2.67 7.61 -2.91 -0.02 2.65 16 29 H 0.09 2.03 7.76 -2.39 -0.02 2.01 16 30 H 0.07 2.41 8.03 -2.39 -0.02 2.39 16 31 H 0.07 1.89 6.74 -2.39 -0.02 1.87 16 32 H 0.04 1.98 8.07 -2.39 -0.02 1.96 16 33 H 0.00 0.10 7.37 -2.39 -0.02 0.08 16 34 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.16 2.78 7.60 -2.91 -0.02 2.75 16 Total: -1.00 -92.29 310.53 5.99 -86.30 By element: Atomic # 1 Polarization: -7.72 SS G_CDS: 1.11 Total: -6.61 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 4.20 Total: 6.10 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -2.36 Total: -86.87 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: 1.02 Total: -49.32 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Total: -92.29 5.99 -86.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088147347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.385 kcal (2) G-P(sol) polarization free energy of solvation -92.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.30 seconds