Wall clock time and date at job start Tue Mar 31 2020 00:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38378 * 119.92893 * 2 1 4 4 C 1.38340 * 120.29287 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14316 * 359.74146 * 4 3 2 6 6 N 1.48019 * 120.07100 * 180.25280 * 5 4 3 7 7 O 1.21791 * 120.00423 * 353.44524 * 6 5 4 8 8 O 1.21806 * 119.99600 * 173.44688 * 6 5 4 9 9 C 1.39556 * 119.85350 * 0.53792 * 5 4 3 10 10 C 1.47847 * 120.14322 * 179.74694 * 9 5 4 11 11 O 1.21550 * 119.99611 * 304.86733 * 10 9 5 12 12 N 1.34774 * 119.99998 * 124.60080 * 10 9 5 13 13 C 1.46500 * 119.99821 * 180.27285 * 12 10 9 14 14 H 1.08999 * 109.47313 * 324.99443 * 13 12 10 15 15 C 1.53000 * 109.47294 * 84.99621 * 13 12 10 16 16 C 1.50706 * 109.46968 * 204.99927 * 13 12 10 17 17 H 1.08003 * 119.99845 * 359.97438 * 16 13 12 18 18 C 1.37881 * 120.00031 * 180.02562 * 16 13 12 19 19 N 1.31513 * 119.99711 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99988 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46746 * 60.00065 * 20 18 16 22 22 H 1.48502 * 109.46919 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47032 * 299.99850 * 20 18 16 24 24 C 1.37933 * 119.92552 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46927 * 269.97912 * 1 2 3 26 26 H 1.08999 * 109.46717 * 29.97556 * 1 2 3 27 27 H 1.08992 * 109.47118 * 149.97604 * 1 2 3 28 28 H 1.07998 * 119.85701 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.93131 * 180.02562 * 4 3 2 30 30 H 0.97005 * 120.00332 * 0.26560 * 12 10 9 31 31 H 1.08999 * 109.46814 * 60.00417 * 15 13 12 32 32 H 1.08996 * 109.47033 * 179.97438 * 15 13 12 33 33 H 1.08996 * 109.47324 * 300.00132 * 15 13 12 34 34 H 0.96998 * 120.00084 * 180.02562 * 19 18 16 35 35 H 1.08007 * 120.07508 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0193 0.0065 6 7 5.7614 0.0306 0.0127 7 8 6.3629 1.0827 -0.1078 8 8 6.3778 -1.0125 0.1383 9 6 3.5911 -1.1937 0.0005 10 6 4.3352 -2.4713 0.0012 11 8 5.1651 -2.6916 -0.8592 12 7 4.0972 -3.3893 0.9588 13 6 4.8388 -4.6527 0.9629 14 1 5.0246 -4.9682 -0.0638 15 6 6.1731 -4.4586 1.6861 16 6 4.0306 -5.7073 1.6740 17 1 3.0616 -5.4609 2.0825 18 6 4.5286 -6.9864 1.8041 19 7 5.7088 -7.2862 1.3072 20 14 3.5271 -8.2934 2.6862 21 1 2.2322 -8.4822 1.9843 22 1 4.2789 -9.5741 2.6903 23 1 3.2741 -7.8630 4.0847 24 6 2.1951 -1.1954 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6539 2.1325 0.0004 29 1 4.1137 2.1474 0.0009 30 1 3.4349 -3.2134 1.6454 31 1 5.9872 -4.1431 2.7128 32 1 6.7246 -5.3987 1.6895 33 1 6.7576 -3.6958 1.1718 34 1 6.0590 -8.1861 1.3983 35 1 1.6551 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088147374.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:10 Heat of formation + Delta-G solvation = -18.065530 kcal Electronic energy + Delta-G solvation = -21569.945871 eV Core-core repulsion = 18150.285143 eV Total energy + Delta-G solvation = -3419.660727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.95796 -39.97257 -38.41130 -36.17249 -34.83537 -33.53996 -32.59613 -31.63134 -28.87592 -28.54224 -25.29631 -25.14247 -24.16481 -22.26599 -20.98719 -19.68735 -19.08505 -18.32145 -17.50980 -17.19790 -16.08838 -15.82801 -15.25033 -15.11745 -14.80938 -14.34678 -14.19859 -13.79238 -13.24092 -12.75542 -12.53384 -12.48329 -12.34383 -11.93461 -11.67830 -11.20155 -11.12363 -10.98950 -10.83904 -10.77383 -10.53749 -10.35306 -10.20166 -9.55653 -9.48021 -9.24590 -9.03523 -8.55831 -7.96925 -6.11979 -4.22280 -0.16199 0.61864 1.43078 1.59811 2.89829 3.24317 3.29610 3.30758 3.33094 3.70395 4.18587 4.30011 4.33093 4.52128 4.64309 4.75954 5.06640 5.15494 5.19467 5.21585 5.42155 5.47087 5.57037 5.63053 5.90312 6.12812 6.60601 6.89238 7.07839 7.19999 7.43060 7.53346 7.66658 7.90173 7.96224 8.16904 8.54638 8.72711 8.98786 9.44445 10.93696 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.005264 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.313769 B = 5317.596793 C = 6493.483855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.039 4.039 3 C -0.115 4.115 4 C -0.056 4.056 5 C -0.020 4.020 6 N 0.020 4.980 7 O -0.188 6.188 8 O -0.100 6.100 9 C -0.045 4.045 10 C 0.538 3.462 11 O -0.513 6.513 12 N -0.693 5.693 13 C 0.267 3.733 14 H 0.051 0.949 15 C -0.149 4.149 16 C -0.537 4.537 17 H 0.060 0.940 18 C 0.068 3.932 19 N -0.880 5.880 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.096 4.096 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.388 0.612 31 H 0.024 0.976 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 15.901 -0.490 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.040 4.040 3 C -0.134 4.134 4 C -0.075 4.075 5 C -0.103 4.103 6 N 0.541 4.459 7 O -0.394 6.394 8 O -0.328 6.328 9 C -0.050 4.050 10 C 0.320 3.680 11 O -0.389 6.389 12 N -0.341 5.341 13 C 0.166 3.834 14 H 0.069 0.931 15 C -0.207 4.207 16 C -0.576 4.576 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.517 5.517 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.115 4.115 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.221 0.779 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.548 15.615 -1.145 19.455 hybrid contribution -0.415 -0.556 0.831 1.083 sum -11.963 15.059 -0.314 19.235 Atomic orbital electron populations 1.20946 0.89390 1.03987 1.03520 1.20311 0.97412 0.92574 0.93656 1.21153 0.92407 0.98745 1.01092 1.20977 0.94631 0.96954 0.94916 1.21116 0.80313 0.95563 1.13325 1.43522 1.03136 1.00708 0.98501 1.94466 1.69331 1.20834 1.54749 1.94764 1.67902 1.20435 1.49687 1.20405 0.94614 0.93956 0.96036 1.17847 0.83128 0.82867 0.84174 1.90834 1.32533 1.77740 1.37760 1.46490 1.41277 1.18882 1.27438 1.18832 0.88950 0.77437 0.98157 0.93088 1.22072 0.98997 1.01984 0.97687 1.21148 1.03701 0.94643 1.38061 0.92200 1.24876 0.95056 0.98317 0.95342 1.69899 1.16900 1.20555 1.44357 0.86506 0.79939 0.80637 0.79968 1.20238 1.21081 1.20193 1.21335 0.91112 0.99550 0.99478 0.89789 0.90589 0.90333 0.83561 0.82752 0.77943 0.95671 0.89164 0.95515 0.92441 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.04 -0.34 5.87 -104.68 -0.61 -0.96 16 3 C -0.12 -0.95 9.69 -39.49 -0.38 -1.33 16 4 C -0.06 -0.62 9.55 -39.64 -0.38 -1.00 16 5 C -0.02 -0.31 6.85 -79.55 -0.55 -0.85 16 6 N 0.02 0.38 4.45 34.16 0.15 0.53 16 7 O -0.19 -3.41 18.47 -29.46 -0.54 -3.95 16 8 O -0.10 -2.24 15.00 -37.09 -0.56 -2.79 16 9 C -0.05 -0.73 5.64 -104.97 -0.59 -1.32 16 10 C 0.54 11.18 5.82 -12.33 -0.07 11.11 16 11 O -0.51 -12.80 14.42 -18.77 -0.27 -13.07 16 12 N -0.69 -14.53 5.05 -55.88 -0.28 -14.81 16 13 C 0.27 6.81 2.56 -69.08 -0.18 6.64 16 14 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 15 C -0.15 -3.81 9.26 37.16 0.34 -3.47 16 16 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 19 N -0.88 -24.74 11.32 55.43 0.63 -24.11 16 20 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.10 -1.12 9.40 -39.19 -0.37 -1.49 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.15 1.43 7.62 -52.49 -0.40 1.03 16 30 H 0.39 6.96 8.51 -40.82 -0.35 6.61 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.15 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -32.93 310.79 -7.98 -40.91 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.95 Total: 2.85 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.82 Total: -5.57 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.50 Total: -38.40 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.37 Total: -19.82 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.93 -7.98 -40.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088147374.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.848 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds