Wall clock time and date at job start Tue Mar 31 2020 00:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37952 * 120.07343 * 2 1 4 4 C 1.38369 * 120.14956 * 179.72461 * 3 2 1 5 5 C 1.50697 * 119.84236 * 180.27882 * 4 3 2 6 6 C 1.38395 * 120.30771 * 0.26054 * 4 3 2 7 7 N 1.48017 * 119.92264 * 180.02562 * 6 4 3 8 8 O 1.31705 * 120.00178 * 89.99897 * 7 6 4 9 9 O 1.31702 * 120.00048 * 269.99725 * 7 6 4 10 10 C 1.37911 * 120.15906 * 0.02562 * 6 4 3 11 11 C 1.50694 * 120.08147 * 179.97438 * 10 6 4 12 12 C 1.39647 * 120.07864 * 180.27708 * 2 1 3 13 13 C 1.47697 * 120.15426 * 0.02562 * 12 2 1 14 14 O 1.21471 * 119.99513 * 270.29312 * 13 12 2 15 15 N 1.34775 * 120.00032 * 90.29100 * 13 12 2 16 16 C 1.33331 * 119.99498 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00557 * 0.02562 * 16 15 13 18 18 C 1.46792 * 119.99672 * 180.02562 * 16 15 13 19 19 N 1.29310 * 119.99788 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47055 * 59.99693 * 20 18 16 22 22 H 1.48498 * 109.46849 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46939 * 299.99845 * 20 18 16 24 24 H 1.09000 * 109.47364 * 89.99668 * 1 2 3 25 25 H 1.08997 * 109.46548 * 210.00055 * 1 2 3 26 26 H 1.08998 * 109.46982 * 329.99211 * 1 2 3 27 27 H 1.08002 * 119.92889 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.47235 * 90.00536 * 5 4 3 29 29 H 1.09004 * 109.46867 * 209.99976 * 5 4 3 30 30 H 1.09001 * 109.47661 * 330.00347 * 5 4 3 31 31 H 1.08996 * 109.47245 * 89.99806 * 11 10 6 32 32 H 1.09009 * 109.46740 * 210.00021 * 11 10 6 33 33 H 1.08997 * 109.46983 * 329.99701 * 11 10 6 34 34 H 0.97001 * 120.00219 * 0.02562 * 15 13 12 35 35 H 0.96998 * 120.00042 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5820 1.1957 0.0058 5 6 4.3302 2.5038 0.0121 6 6 4.2820 0.0018 0.0061 7 7 5.7621 0.0137 0.0129 8 8 6.4155 0.0163 1.1564 9 8 6.4258 0.0217 -1.1247 10 6 3.6039 -1.1990 0.0002 11 6 4.3678 -2.4980 0.0000 12 6 2.2070 -1.2084 -0.0058 13 6 1.4737 -2.4905 -0.0126 14 8 1.1671 -3.0202 1.0366 15 7 1.1447 -3.0725 -1.1829 16 6 0.4832 -4.2301 -1.1889 17 1 0.2106 -4.7012 -0.2561 18 6 0.1254 -4.8643 -2.4634 19 7 0.4522 -4.3004 -3.5803 20 14 -0.8020 -6.4858 -2.4719 21 1 -2.1038 -6.3150 -1.7781 22 1 -1.0400 -6.9125 -3.8742 23 1 0.0012 -7.5190 -1.7701 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6584 2.1292 0.0004 28 1 4.5064 2.8166 1.0413 29 1 5.2853 2.3786 -0.4981 30 1 3.7402 3.2624 -0.5023 31 1 4.5478 -2.8138 1.0276 32 1 3.7869 -3.2610 -0.5183 33 1 5.3212 -2.3586 -0.5096 34 1 1.3898 -2.6495 -2.0207 35 1 0.2154 -4.7193 -4.4225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094077372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:20 Heat of formation + Delta-G solvation = 5.087703 kcal Electronic energy + Delta-G solvation = -21584.282061 eV Core-core repulsion = 18165.625333 eV Total energy + Delta-G solvation = -3418.656728 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -40.65005 -38.75826 -37.64125 -34.30813 -34.23712 -33.85566 -33.63182 -31.78009 -28.78637 -28.13921 -27.54309 -25.13003 -24.43940 -21.81969 -20.94928 -19.82199 -18.50885 -18.15993 -17.83344 -17.05789 -15.90692 -14.94241 -14.89522 -14.76464 -14.56817 -14.08472 -13.78200 -13.37513 -13.27588 -13.13559 -12.91715 -12.65122 -12.54380 -11.99086 -11.84780 -11.76722 -11.52626 -11.44746 -11.34928 -11.23760 -10.93443 -10.66960 -10.63075 -10.32729 -9.74474 -9.06823 -8.90439 -8.51936 -8.45805 -6.82027 -3.85688 -0.20530 0.68279 0.96550 1.16878 2.98614 3.09001 3.11991 3.20049 3.60170 3.94479 4.22783 4.34898 4.55444 4.68714 4.85091 4.92572 5.08420 5.12263 5.22376 5.33046 5.45388 5.50980 5.62057 5.66857 5.72990 5.76729 5.92083 5.96715 6.10360 6.20509 6.26689 6.43325 6.60390 6.67660 7.05597 7.76650 8.32031 8.90571 9.29733 9.90119 10.32752 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.005094 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.314088 B = 5495.651619 C = 6014.874876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.014 4.014 3 C -0.121 4.121 4 C -0.035 4.035 5 C -0.127 4.127 6 C -0.009 4.009 7 N -0.025 5.025 8 O -0.144 6.144 9 O -0.148 6.148 10 C -0.003 4.003 11 C -0.133 4.133 12 C -0.077 4.077 13 C 0.444 3.556 14 O -0.590 6.590 15 N -0.511 5.511 16 C -0.351 4.351 17 H 0.112 0.888 18 C 0.040 3.960 19 N -0.853 5.853 20 Si 0.934 3.066 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.268 1.268 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.390 0.610 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 10.877 1.907 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.014 4.014 3 C -0.139 4.139 4 C -0.036 4.036 5 C -0.184 4.184 6 C -0.090 4.090 7 N 0.471 4.529 8 O -0.350 6.350 9 O -0.352 6.352 10 C -0.005 4.005 11 C -0.189 4.189 12 C -0.081 4.081 13 C 0.231 3.769 14 O -0.478 6.478 15 N -0.141 5.141 16 C -0.481 4.481 17 H 0.129 0.871 18 C -0.172 4.172 19 N -0.488 5.488 20 Si 0.760 3.240 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.193 1.193 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.164 0.836 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.223 0.777 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.533 10.446 2.326 10.811 hybrid contribution 0.289 -0.476 -0.638 0.847 sum 1.822 9.970 1.688 10.274 Atomic orbital electron populations 1.20961 0.89346 1.04145 1.03630 1.20388 0.97451 0.91353 0.92241 1.20779 0.91260 0.98579 1.03302 1.19532 0.94132 0.92704 0.97271 1.20981 1.00175 0.93561 1.03668 1.19732 0.75277 0.96039 1.17916 1.50478 1.04949 0.95257 1.02216 1.96271 1.70967 1.52951 1.14806 1.96279 1.70152 1.53196 1.15548 1.19688 0.93295 0.93101 0.94425 1.21047 0.99577 0.94079 1.04204 1.20157 0.91069 0.96109 1.00773 1.17028 0.88745 0.85824 0.85284 1.90617 1.60753 1.65195 1.31243 1.40775 1.46744 1.20128 1.06462 1.20518 1.35228 0.99021 0.93368 0.87077 1.26866 0.96718 0.99678 0.93914 1.68635 1.41434 1.39920 0.98785 0.85864 0.80060 0.80671 0.77432 1.19279 1.20690 1.19278 0.89755 0.89506 0.90897 0.83620 0.89669 0.91439 0.89551 0.89235 0.88464 0.91531 0.77688 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.62 36.01 0.35 -1.41 16 2 C -0.01 -0.21 5.92 -104.20 -0.62 -0.83 16 3 C -0.12 -1.55 9.34 -39.64 -0.37 -1.92 16 4 C -0.03 -0.48 5.89 -104.52 -0.62 -1.10 16 5 C -0.13 -1.36 9.76 36.00 0.35 -1.01 16 6 C -0.01 -0.14 6.20 -80.01 -0.50 -0.64 16 7 N -0.02 -0.42 2.72 33.93 0.09 -0.33 16 8 O -0.14 -2.51 19.97 -31.57 -0.63 -3.14 16 9 O -0.15 -2.59 19.86 -31.57 -0.63 -3.22 16 10 C 0.00 -0.06 5.92 -104.20 -0.62 -0.67 16 11 C -0.13 -2.39 9.38 36.00 0.34 -2.05 16 12 C -0.08 -1.47 5.63 -104.96 -0.59 -2.06 16 13 C 0.44 10.23 4.12 -12.40 -0.05 10.18 16 14 O -0.59 -15.79 16.62 5.39 0.09 -15.70 16 15 N -0.51 -12.25 5.17 -10.61 -0.05 -12.30 16 16 C -0.35 -9.11 9.92 -13.45 -0.13 -9.24 16 17 H 0.11 3.06 7.19 -52.49 -0.38 2.68 16 18 C 0.04 0.98 5.69 -15.16 -0.09 0.90 16 19 N -0.85 -21.11 13.09 56.00 0.73 -20.37 16 20 Si 0.93 19.23 29.65 -169.99 -5.04 14.19 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.09 1.49 7.09 -51.93 -0.37 1.12 16 26 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 27 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.79 7.36 -51.93 -0.38 0.41 16 30 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.10 1.89 7.08 -51.92 -0.37 1.52 16 33 H 0.07 1.12 7.38 -51.93 -0.38 0.74 16 34 H 0.39 9.09 7.97 -40.82 -0.33 8.76 16 35 H 0.28 6.56 8.26 -40.82 -0.34 6.22 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -29.11 316.74 -7.07 -36.18 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -3.87 Total: 9.78 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.54 Total: -9.85 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.77 Total: -33.01 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -1.17 Total: -22.06 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.04 Total: 14.19 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.11 -7.07 -36.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094077372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.266 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds