Wall clock time and date at job start Tue Mar 31 2020 00:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37952 * 120.07343 * 2 1 4 4 C 1.38369 * 120.14956 * 179.72461 * 3 2 1 5 5 C 1.50697 * 119.84236 * 180.27882 * 4 3 2 6 6 C 1.38395 * 120.30771 * 0.26054 * 4 3 2 7 7 N 1.48017 * 119.92264 * 180.02562 * 6 4 3 8 8 O 1.31705 * 120.00178 * 89.99897 * 7 6 4 9 9 O 1.31702 * 120.00048 * 269.99725 * 7 6 4 10 10 C 1.37911 * 120.15906 * 0.02562 * 6 4 3 11 11 C 1.50694 * 120.08147 * 179.97438 * 10 6 4 12 12 C 1.39647 * 120.07864 * 180.27708 * 2 1 3 13 13 C 1.47697 * 120.15426 * 0.02562 * 12 2 1 14 14 O 1.21471 * 119.99513 * 270.29312 * 13 12 2 15 15 N 1.34775 * 120.00032 * 90.29100 * 13 12 2 16 16 C 1.33331 * 119.99498 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00557 * 0.02562 * 16 15 13 18 18 C 1.46792 * 119.99672 * 180.02562 * 16 15 13 19 19 N 1.29310 * 119.99788 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47055 * 59.99693 * 20 18 16 22 22 H 1.48498 * 109.46849 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46939 * 299.99845 * 20 18 16 24 24 H 1.09000 * 109.47364 * 89.99668 * 1 2 3 25 25 H 1.08997 * 109.46548 * 210.00055 * 1 2 3 26 26 H 1.08998 * 109.46982 * 329.99211 * 1 2 3 27 27 H 1.08002 * 119.92889 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.47235 * 90.00536 * 5 4 3 29 29 H 1.09004 * 109.46867 * 209.99976 * 5 4 3 30 30 H 1.09001 * 109.47661 * 330.00347 * 5 4 3 31 31 H 1.08996 * 109.47245 * 89.99806 * 11 10 6 32 32 H 1.09009 * 109.46740 * 210.00021 * 11 10 6 33 33 H 1.08997 * 109.46983 * 329.99701 * 11 10 6 34 34 H 0.97001 * 120.00219 * 0.02562 * 15 13 12 35 35 H 0.96998 * 120.00042 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5820 1.1957 0.0058 5 6 4.3302 2.5038 0.0121 6 6 4.2820 0.0018 0.0061 7 7 5.7621 0.0137 0.0129 8 8 6.4155 0.0163 1.1564 9 8 6.4258 0.0217 -1.1247 10 6 3.6039 -1.1990 0.0002 11 6 4.3678 -2.4980 0.0000 12 6 2.2070 -1.2084 -0.0058 13 6 1.4737 -2.4905 -0.0126 14 8 1.1671 -3.0202 1.0366 15 7 1.1447 -3.0725 -1.1829 16 6 0.4832 -4.2301 -1.1889 17 1 0.2106 -4.7012 -0.2561 18 6 0.1254 -4.8643 -2.4634 19 7 0.4522 -4.3004 -3.5803 20 14 -0.8020 -6.4858 -2.4719 21 1 -2.1038 -6.3150 -1.7781 22 1 -1.0400 -6.9125 -3.8742 23 1 0.0012 -7.5190 -1.7701 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6584 2.1292 0.0004 28 1 4.5064 2.8166 1.0413 29 1 5.2853 2.3786 -0.4981 30 1 3.7402 3.2624 -0.5023 31 1 4.5478 -2.8138 1.0276 32 1 3.7869 -3.2610 -0.5183 33 1 5.3212 -2.3586 -0.5096 34 1 1.3898 -2.6495 -2.0207 35 1 0.2154 -4.7193 -4.4225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094077372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:17 Heat of formation + Delta-G solvation = -12.025878 kcal Electronic energy + Delta-G solvation = -21585.024162 eV Core-core repulsion = 18165.625333 eV Total energy + Delta-G solvation = -3419.398828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98543 -40.32623 -39.17472 -36.11829 -35.67571 -35.16705 -34.89650 -33.69976 -30.05097 -29.32395 -28.89025 -26.67420 -25.95469 -23.23436 -22.22484 -21.33054 -20.39234 -19.50877 -19.38643 -18.37704 -17.56336 -16.75006 -16.27163 -16.11020 -15.94119 -15.49190 -15.08990 -14.86108 -14.54809 -14.50045 -14.24923 -13.99453 -13.79568 -13.64083 -13.09615 -13.03099 -12.94895 -12.80732 -12.69749 -12.62379 -12.47357 -12.25852 -12.11554 -12.01631 -11.62970 -10.64814 -10.38650 -10.26100 -9.99176 -8.71509 -5.86094 -1.58329 -0.56821 -0.28982 -0.15500 1.30061 1.40007 1.48369 1.85201 1.95927 2.22955 2.88535 3.00302 3.07181 3.33002 3.38495 3.73664 3.76643 3.94386 4.06850 4.15784 4.18908 4.29835 4.43286 4.48571 4.53120 4.65870 4.72725 4.77978 4.86127 4.88113 5.05776 5.13118 5.20514 5.29468 5.41485 5.78315 6.39063 6.98723 7.39412 8.02673 8.43090 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.005094 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.314088 B = 5495.651619 C = 6014.874876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.013 4.013 3 C -0.097 4.097 4 C -0.022 4.022 5 C -0.127 4.127 6 C -0.025 4.025 7 N -0.019 5.019 8 O -0.148 6.148 9 O -0.158 6.158 10 C -0.019 4.019 11 C -0.128 4.128 12 C -0.110 4.110 13 C 0.455 3.545 14 O -0.636 6.636 15 N -0.514 5.514 16 C -0.392 4.392 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.870 5.870 20 Si 0.996 3.004 21 H -0.266 1.266 22 H -0.263 1.263 23 H -0.271 1.271 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.117 0.883 27 H 0.201 0.799 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.391 0.609 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 13.532 1.363 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.014 4.014 3 C -0.115 4.115 4 C -0.023 4.023 5 C -0.183 4.183 6 C -0.106 4.106 7 N 0.476 4.524 8 O -0.355 6.355 9 O -0.361 6.361 10 C -0.021 4.021 11 C -0.184 4.184 12 C -0.114 4.114 13 C 0.244 3.756 14 O -0.527 6.527 15 N -0.144 5.144 16 C -0.522 4.522 17 H 0.103 0.897 18 C -0.198 4.198 19 N -0.503 5.503 20 Si 0.818 3.182 21 H -0.191 1.191 22 H -0.187 1.187 23 H -0.196 1.196 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.136 0.864 27 H 0.218 0.782 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.225 0.775 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.995 13.116 1.745 13.269 hybrid contribution 0.495 -1.204 -0.450 1.377 sum 1.490 11.912 1.295 12.075 Atomic orbital electron populations 1.21001 0.88326 1.04387 1.04120 1.20660 0.98287 0.91118 0.91337 1.21290 0.90695 0.99233 1.00304 1.20117 0.94772 0.93025 0.94427 1.21140 0.99732 0.92367 1.05073 1.19904 0.74895 0.96587 1.19239 1.50548 1.05209 0.94690 1.01962 1.96265 1.71244 1.53080 1.14911 1.96277 1.70428 1.53724 1.15664 1.19564 0.93116 0.93623 0.95826 1.20943 0.99575 0.94076 1.03845 1.19814 0.91372 0.95337 1.04879 1.17565 0.87357 0.86595 0.84123 1.90562 1.62359 1.67034 1.32718 1.40752 1.46927 1.19877 1.06812 1.20435 1.37819 1.00619 0.93289 0.89735 1.27617 0.96775 1.02391 0.93043 1.68662 1.41340 1.41053 0.99287 0.84968 0.78584 0.76479 0.78184 1.19054 1.18747 1.19590 0.89071 0.93406 0.86436 0.78167 0.87994 0.92707 0.85771 0.89423 0.90835 0.90840 0.77525 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.23 9.62 71.24 0.68 -2.54 16 2 C -0.01 -0.39 5.92 -19.59 -0.12 -0.51 16 3 C -0.10 -2.05 9.34 22.23 0.21 -1.84 16 4 C -0.02 -0.53 5.89 -19.80 -0.12 -0.65 16 5 C -0.13 -2.11 9.76 71.23 0.70 -1.41 16 6 C -0.03 -0.81 6.20 36.34 0.23 -0.59 16 7 N -0.02 -0.64 2.72 -46.56 -0.13 -0.77 16 8 O -0.15 -5.05 19.97 3.51 0.07 -4.98 16 9 O -0.16 -5.43 19.86 3.51 0.07 -5.36 16 10 C -0.02 -0.71 5.92 -19.59 -0.12 -0.83 16 11 C -0.13 -4.85 9.38 71.23 0.67 -4.18 16 12 C -0.11 -4.27 5.63 -20.09 -0.11 -4.38 16 13 C 0.45 22.09 4.12 86.74 0.36 22.45 16 14 O -0.64 -36.19 16.62 -3.63 -0.06 -36.25 16 15 N -0.51 -25.96 5.17 -305.81 -1.58 -27.54 16 16 C -0.39 -21.37 9.92 86.70 0.86 -20.51 16 17 H 0.08 4.98 7.19 -2.91 -0.02 4.96 16 18 C 0.01 0.61 5.69 87.30 0.50 1.11 16 19 N -0.87 -43.25 13.09 23.26 0.30 -42.95 16 20 Si 1.00 39.62 29.65 68.60 2.03 41.65 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.05 1.66 7.09 -2.39 -0.02 1.64 16 26 H 0.12 2.02 8.09 -2.39 -0.02 2.00 16 27 H 0.20 2.09 8.06 -2.91 -0.02 2.06 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.10 7.36 -2.38 -0.02 1.08 16 30 H 0.12 1.18 8.08 -2.39 -0.02 1.16 16 31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.07 3.09 7.08 -2.38 -0.02 3.07 16 33 H 0.07 2.59 7.38 -2.39 -0.02 2.57 16 34 H 0.39 19.11 7.97 -92.71 -0.74 18.37 16 35 H 0.29 13.37 8.26 -92.71 -0.77 12.60 16 Total: -1.00 -67.33 316.74 4.85 -62.48 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.41 Total: 27.60 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 3.73 Total: -13.88 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -1.40 Total: -71.25 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: 0.08 Total: -46.59 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -67.33 4.85 -62.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094077372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.458 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds