Wall clock time and date at job start Mon Mar 30 2020 23:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48502 * 109.47155 * 269.99838 * 3 2 1 5 5 H 1.48497 * 109.47249 * 29.99363 * 3 2 1 6 6 H 1.48496 * 109.47431 * 150.00175 * 3 2 1 7 7 C 1.38755 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00576 * 179.97438 * 7 2 1 9 9 O 1.34929 * 119.99658 * 0.02562 * 7 2 1 10 10 C 1.34311 * 116.99741 * 179.97438 * 9 7 2 11 11 O 1.21208 * 120.00284 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99602 * 179.97438 * 10 9 7 13 13 C 1.50699 * 110.01969 * 300.70095 * 12 10 9 14 14 C 1.38265 * 119.98874 * 352.53597 * 13 12 10 15 15 C 1.38226 * 120.05603 * 179.97438 * 14 13 12 16 16 C 1.38223 * 120.02097 * 359.78385 * 15 14 13 17 17 C 1.38434 * 119.97553 * 0.44288 * 16 15 14 18 18 F 1.35098 * 120.02597 * 179.81572 * 17 16 15 19 19 C 1.38183 * 119.98785 * 172.50623 * 13 12 10 20 20 C 1.54264 * 110.07564 * 62.12175 * 12 10 9 21 21 C 1.54887 * 104.19655 * 95.69067 * 20 12 10 22 22 C 1.54891 * 102.74849 * 37.94616 * 21 20 12 23 23 C 1.53880 * 110.03355 * 179.31194 * 12 10 9 24 24 H 0.97002 * 119.99633 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.97436 * 359.97438 * 14 13 12 26 26 H 1.07993 * 119.98788 * 180.02562 * 15 14 13 27 27 H 1.07995 * 120.01185 * 180.23692 * 16 15 14 28 28 H 1.07995 * 120.00978 * 0.02947 * 19 13 12 29 29 H 1.09001 * 110.49133 * 214.37329 * 20 12 10 30 30 H 1.09005 * 110.48309 * 337.01652 * 20 12 10 31 31 H 1.08998 * 110.76480 * 279.63011 * 21 20 12 32 32 H 1.09008 * 110.91674 * 156.33006 * 21 20 12 33 33 H 1.09000 * 110.48982 * 203.37397 * 22 21 20 34 34 H 1.09002 * 110.59797 * 80.78674 * 22 21 20 35 35 H 1.09005 * 110.02795 * 359.95269 * 23 12 10 36 36 H 1.08995 * 110.03505 * 121.33393 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4458 2.6527 0.6999 6 1 3.5460 1.4402 0.7000 7 6 2.0083 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2756 -3.4331 0.0010 12 6 1.3810 -4.8392 0.0011 13 6 0.5032 -4.9704 1.2190 14 6 0.5415 -4.0029 2.2060 15 6 -0.2635 -4.1216 3.3234 16 6 -1.1112 -5.2056 3.4530 17 6 -1.1470 -6.1773 2.4677 18 9 -1.9725 -7.2392 2.5952 19 6 -0.3403 -6.0572 1.3485 20 6 0.5365 -5.0038 -1.2793 21 6 1.4629 -5.7795 -2.2483 22 6 2.1859 -6.7745 -1.3068 23 6 2.4297 -5.9652 -0.0164 24 1 -0.4850 0.8401 -0.0004 25 1 1.2010 -3.1538 2.1039 26 1 -0.2330 -3.3650 4.0934 27 1 -1.7429 -5.2962 4.3243 28 1 -0.3701 -6.8128 0.5775 29 1 -0.3651 -5.5797 -1.0703 30 1 0.2800 -4.0292 -1.6949 31 1 2.1778 -5.1064 -2.7214 32 1 0.8808 -6.3126 -3.0001 33 1 3.1332 -7.0924 -1.7425 34 1 1.5527 -7.6377 -1.1018 35 1 3.4335 -5.5404 -0.0261 36 1 2.3042 -6.6059 0.8564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104538812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:51 Heat of formation + Delta-G solvation = -127.973653 kcal Electronic energy + Delta-G solvation = -22041.133005 eV Core-core repulsion = 18596.786342 eV Total energy + Delta-G solvation = -3444.346663 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.87734 -41.98037 -39.97930 -38.44368 -36.98007 -34.32269 -32.96097 -31.59253 -29.76946 -29.19959 -27.43008 -24.50094 -23.56301 -22.93611 -21.66480 -20.40064 -19.84464 -19.03552 -17.83288 -17.43563 -17.22034 -16.81319 -16.55938 -16.37436 -16.26600 -15.77119 -15.45631 -14.78356 -14.43404 -14.31755 -14.10027 -13.77294 -13.57467 -13.18659 -12.98800 -12.74393 -12.52112 -12.33808 -12.19592 -12.17974 -12.04488 -12.00777 -11.90608 -11.73721 -11.46569 -10.90417 -10.69259 -9.91551 -9.65122 -8.53755 -6.33360 0.14974 0.20715 1.26978 1.32043 1.48272 1.59864 2.07651 2.55550 2.64545 2.94875 3.17997 3.50828 3.57760 3.67799 3.88357 4.07354 4.15421 4.24060 4.35870 4.43322 4.46638 4.57109 4.65721 4.78491 4.81887 4.93184 5.00991 5.04261 5.07748 5.10478 5.20368 5.22773 5.27697 5.37649 5.46654 5.52811 5.82262 5.90422 6.63781 6.91132 7.77050 8.65769 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.006676 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.297441 B = 4192.830765 C = 5305.049349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.002 3.998 3 Si 1.010 2.990 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.422 4.422 8 H 0.077 0.923 9 O -0.228 6.228 10 C 0.410 3.590 11 O -0.580 6.580 12 C -0.006 4.006 13 C -0.046 4.046 14 C -0.137 4.137 15 C -0.087 4.087 16 C -0.149 4.149 17 C 0.092 3.908 18 F -0.138 7.138 19 C -0.138 4.138 20 C -0.110 4.110 21 C -0.122 4.122 22 C -0.109 4.109 23 C -0.113 4.113 24 H 0.278 0.722 25 H 0.095 0.905 26 H 0.147 0.853 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 -12.749 2.205 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.199 4.199 3 Si 0.829 3.171 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.190 1.190 7 C -0.498 4.498 8 H 0.095 0.905 9 O -0.136 6.136 10 C 0.258 3.742 11 O -0.478 6.478 12 C -0.008 4.008 13 C -0.046 4.046 14 C -0.155 4.155 15 C -0.105 4.105 16 C -0.167 4.167 17 C 0.073 3.927 18 F -0.116 7.116 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.147 4.147 23 C -0.150 4.150 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.165 0.835 27 H 0.181 0.819 28 H 0.180 0.820 29 H 0.123 0.877 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.757 -12.614 2.216 13.100 hybrid contribution 0.522 1.272 0.054 1.376 sum -2.235 -11.342 2.270 11.780 Atomic orbital electron populations 1.70084 1.07442 1.29176 1.46518 1.26401 0.96776 1.01964 0.94741 0.84728 0.77783 0.75069 0.79471 1.18614 1.18362 1.18960 1.21360 0.91954 0.81406 1.55080 0.90538 1.83963 1.39697 1.13690 1.76221 1.23886 0.86368 0.88098 0.75855 1.90483 1.17148 1.88267 1.51866 1.20099 0.95684 0.89166 0.95816 1.19334 0.96393 0.94659 0.94240 1.21357 1.00630 0.98233 0.95311 1.21142 0.94337 0.97825 0.97236 1.21363 1.01277 0.93824 1.00241 1.17604 0.92581 0.86090 0.96417 1.91488 1.69959 1.54132 1.96061 1.20921 0.96780 0.99332 0.98601 1.22597 0.98780 1.01103 0.92293 1.22548 0.97989 0.97688 0.97760 1.22366 1.01615 0.97672 0.92998 1.22355 0.97483 0.94348 1.00816 0.91303 0.88707 0.83516 0.81883 0.81988 0.87662 0.93418 0.93595 0.87836 0.90133 0.88307 0.91644 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.52 13.67 21.62 0.30 -52.23 16 2 C 0.00 0.12 5.49 84.87 0.47 0.59 16 3 Si 1.01 43.57 29.55 68.60 2.03 45.60 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.42 -25.63 9.65 67.94 0.66 -24.97 16 8 H 0.08 4.77 6.86 -2.91 -0.02 4.75 16 9 O -0.23 -13.34 8.05 14.78 0.12 -13.23 16 10 C 0.41 20.97 5.08 71.24 0.36 21.34 16 11 O -0.58 -32.41 14.45 20.78 0.30 -32.11 16 12 C -0.01 -0.25 0.72 -52.95 -0.04 -0.28 16 13 C -0.05 -1.64 4.60 -19.87 -0.09 -1.73 16 14 C -0.14 -5.43 8.83 22.27 0.20 -5.24 16 15 C -0.09 -2.76 10.04 22.26 0.22 -2.54 16 16 C -0.15 -3.92 10.03 22.31 0.22 -3.69 16 17 C 0.09 2.50 7.30 22.38 0.16 2.66 16 18 F -0.14 -3.48 17.27 44.97 0.78 -2.71 16 19 C -0.14 -3.90 8.39 22.32 0.19 -3.71 16 20 C -0.11 -3.64 5.76 31.67 0.18 -3.46 16 21 C -0.12 -3.26 6.91 31.88 0.22 -3.04 16 22 C -0.11 -2.53 6.83 31.67 0.22 -2.31 16 23 C -0.11 -3.54 5.90 31.32 0.18 -3.36 16 24 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.09 4.60 5.88 -2.91 -0.02 4.58 16 26 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.16 3.59 7.32 -2.91 -0.02 3.57 16 29 H 0.11 2.83 6.44 -2.39 -0.02 2.82 16 30 H 0.05 1.91 7.64 -2.38 -0.02 1.89 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 2.05 8.14 -2.38 -0.02 2.04 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 2.45 6.39 -2.38 -0.02 2.44 16 36 H 0.09 2.38 7.49 -2.39 -0.02 2.36 16 Total: -1.00 -72.01 304.82 7.77 -64.23 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.10 Total: 20.19 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.15 Total: -29.75 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.30 Total: -52.23 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: 0.42 Total: -45.34 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.01 7.77 -64.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104538812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.739 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds