Wall clock time and date at job start Tue Mar 31 2020 00:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38633 * 119.82054 * 2 1 4 4 C 1.37948 * 120.43598 * 180.02562 * 3 2 1 5 5 C 1.38959 * 120.07040 * 0.02562 * 4 3 2 6 6 N 1.38825 * 120.18393 * 179.97438 * 5 4 3 7 7 C 1.40407 * 119.63800 * 0.02562 * 5 4 3 8 8 C 1.47287 * 120.21208 * 179.97438 * 7 5 4 9 9 O 1.21519 * 120.00257 * 6.04847 * 8 7 5 10 10 O 1.34767 * 119.99914 * 186.32756 * 8 7 5 11 11 C 1.45206 * 117.00335 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47321 * 179.97438 * 11 10 8 13 13 O 1.21293 * 119.99981 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00244 * 179.97438 * 12 11 10 15 15 C 1.37093 * 120.00621 * 179.97438 * 14 12 11 16 16 H 1.08002 * 119.99186 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00169 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00428 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99836 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47297 * 60.00011 * 19 17 15 21 21 H 1.48504 * 109.46906 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47173 * 299.99748 * 19 17 15 23 23 C 1.37713 * 119.81765 * 180.26266 * 2 1 3 24 24 H 1.08997 * 109.47136 * 89.99363 * 1 2 3 25 25 H 1.08996 * 109.46944 * 209.99970 * 1 2 3 26 26 H 1.09005 * 109.46725 * 329.99736 * 1 2 3 27 27 H 1.08003 * 119.77984 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.96456 * 179.97438 * 4 3 2 29 29 H 0.96997 * 120.00223 * 202.60703 * 6 5 4 30 30 H 0.97007 * 119.99620 * 22.59731 * 6 5 4 31 31 H 1.09000 * 109.46820 * 300.00276 * 11 10 8 32 32 H 1.09001 * 109.46596 * 59.99897 * 11 10 8 33 33 H 0.97008 * 119.99525 * 0.02562 * 14 12 11 34 34 H 0.96999 * 120.00573 * 179.97438 * 18 17 15 35 35 H 1.08005 * 120.04034 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2028 0.0000 4 6 3.5758 1.2176 -0.0005 5 6 4.2850 0.0226 -0.0016 6 7 5.6732 0.0347 -0.0027 7 6 3.5898 -1.1973 -0.0027 8 6 4.3287 -2.4714 -0.0044 9 8 5.5389 -2.4722 0.1060 10 8 3.6633 -3.6362 -0.1341 11 6 4.4560 -4.8527 -0.1280 12 6 3.5476 -6.0451 -0.2817 13 8 2.3498 -5.8855 -0.3866 14 7 4.0661 -7.2890 -0.3037 15 6 3.2396 -8.3739 -0.4430 16 1 2.1730 -8.2317 -0.5356 17 6 3.7742 -9.6562 -0.4651 18 7 5.0720 -9.8291 -0.3529 19 14 2.6480 -11.1344 -0.6556 20 1 1.9092 -11.0315 -1.9397 21 1 3.4590 -12.3784 -0.6500 22 1 1.6808 -11.1683 0.4707 23 6 2.1918 -1.1948 -0.0055 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6499 2.1343 -0.0004 28 1 4.1052 2.1590 -0.0009 29 1 6.1647 -0.7363 -0.3263 30 1 6.1516 0.8144 0.3201 31 1 5.1663 -4.8276 -0.9544 32 1 4.9980 -4.9283 0.8147 33 1 5.0241 -7.4166 -0.2201 34 1 5.4452 -10.7243 -0.3680 35 1 1.6494 -2.1288 -0.0093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113617023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:13 Heat of formation + Delta-G solvation = -98.996061 kcal Electronic energy + Delta-G solvation = -20545.969164 eV Core-core repulsion = 17122.799025 eV Total energy + Delta-G solvation = -3423.170138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58699 -39.08848 -38.01011 -36.24562 -34.87905 -33.98233 -31.61655 -31.32351 -30.88012 -28.29596 -25.94190 -24.84900 -23.90974 -22.04224 -20.39063 -19.54472 -18.05224 -17.71265 -17.09206 -16.89994 -16.36406 -16.15158 -15.55308 -14.70568 -14.52270 -14.19679 -14.09691 -13.92031 -13.80616 -13.65861 -12.94187 -12.65283 -12.26053 -12.16674 -12.13666 -11.76486 -11.60815 -11.33219 -11.10300 -10.49303 -10.47995 -10.37863 -10.28968 -10.12116 -9.58319 -9.12925 -8.50420 -8.06988 -7.65724 -6.48723 -3.90785 0.77514 1.43486 2.63263 2.78693 3.16482 3.23554 3.28594 3.73618 3.77440 3.81960 4.13007 4.60487 4.75049 4.82080 5.02311 5.15240 5.16421 5.31748 5.38807 5.56322 5.58767 5.61941 5.72184 5.92358 5.95306 6.04387 6.10828 6.16360 6.50269 6.61053 6.76587 7.35669 7.48714 7.74767 7.90237 7.99951 8.50091 9.08242 9.40699 9.90810 10.68512 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.003431 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.697428 B = 8159.090161 C = 9072.075888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.160 4.160 3 C -0.039 4.039 4 C -0.209 4.209 5 C 0.273 3.727 6 N -0.862 5.862 7 C -0.203 4.203 8 C 0.515 3.485 9 O -0.528 6.528 10 O -0.320 6.320 11 C 0.062 3.938 12 C 0.439 3.561 13 O -0.575 6.575 14 N -0.553 5.553 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.011 4.011 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.413 0.587 30 H 0.395 0.605 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 20.442 0.943 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.162 4.162 3 C -0.057 4.057 4 C -0.232 4.232 5 C 0.164 3.836 6 N -0.406 5.406 7 C -0.209 4.209 8 C 0.363 3.637 9 O -0.420 6.420 10 O -0.234 6.234 11 C -0.016 4.016 12 C 0.224 3.776 13 O -0.459 6.459 14 N -0.190 5.190 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.539 5.539 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.030 4.030 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.251 0.749 30 H 0.223 0.777 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.228 0.772 34 H 0.084 0.916 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.332 20.257 0.884 20.320 hybrid contribution 0.798 -0.893 -0.002 1.198 sum -0.534 19.363 0.882 19.391 Atomic orbital electron populations 1.20677 0.90810 1.02621 1.02157 1.19653 0.96454 0.92541 1.07570 1.21011 0.93386 0.97610 0.93742 1.20628 0.94401 0.95990 1.12134 1.17647 0.84644 0.91847 0.89493 1.42946 1.03103 1.23201 1.71391 1.18657 0.93817 0.88806 1.19602 1.21054 0.85698 0.84627 0.72338 1.90583 1.15320 1.87646 1.48428 1.86611 1.40398 1.13939 1.82427 1.22741 0.93519 0.81927 1.03406 1.19320 0.88778 0.83602 0.85943 1.90557 1.15141 1.85216 1.55033 1.41692 1.10287 1.03784 1.63243 1.19681 0.92588 0.83429 1.47494 0.87655 1.25304 0.96380 0.99114 0.96929 1.69605 1.10757 1.24044 1.49458 0.85859 0.79331 0.79472 0.79229 1.19748 1.20886 1.19741 1.21318 0.91996 0.98928 0.90771 0.91561 0.91410 0.91968 0.85687 0.85449 0.74893 0.77670 0.89562 0.89551 0.77171 0.91589 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.00 36.01 0.36 -0.58 16 2 C -0.16 -1.77 5.87 -104.67 -0.61 -2.39 16 3 C -0.04 -0.37 9.67 -39.54 -0.38 -0.75 16 4 C -0.21 -2.07 9.92 -39.42 -0.39 -2.46 16 5 C 0.27 3.36 6.76 -83.61 -0.57 2.80 16 6 N -0.86 -9.32 8.54 32.55 0.28 -9.04 16 7 C -0.20 -2.97 5.89 -104.82 -0.62 -3.59 16 8 C 0.52 8.86 7.86 34.41 0.27 9.13 16 9 O -0.53 -9.20 13.59 -19.28 -0.26 -9.46 16 10 O -0.32 -6.23 9.02 -47.36 -0.43 -6.66 16 11 C 0.06 1.21 5.95 36.00 0.21 1.42 16 12 C 0.44 10.71 7.86 -10.99 -0.09 10.63 16 13 O -0.58 -16.09 16.08 -14.11 -0.23 -16.32 16 14 N -0.55 -14.10 5.29 -10.97 -0.06 -14.15 16 15 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 16 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 19 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.01 -0.16 9.25 -39.19 -0.36 -0.52 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 28 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 29 H 0.41 5.12 6.02 -40.82 -0.25 4.87 16 30 H 0.40 3.04 8.90 -40.82 -0.36 2.67 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.14 2.06 7.63 -52.48 -0.40 1.66 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -32.17 313.27 -6.48 -38.66 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -3.79 Total: 14.25 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -2.42 Total: 5.72 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.94 Total: -46.68 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.92 Total: -32.43 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.17 -6.48 -38.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113617023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.339 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds