Wall clock time and date at job start Tue Mar 31 2020 00:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38633 * 119.82054 * 2 1 4 4 C 1.37948 * 120.43598 * 180.02562 * 3 2 1 5 5 C 1.38959 * 120.07040 * 0.02562 * 4 3 2 6 6 N 1.38825 * 120.18393 * 179.97438 * 5 4 3 7 7 C 1.40407 * 119.63800 * 0.02562 * 5 4 3 8 8 C 1.47287 * 120.21208 * 179.97438 * 7 5 4 9 9 O 1.21519 * 120.00257 * 6.04847 * 8 7 5 10 10 O 1.34767 * 119.99914 * 186.32756 * 8 7 5 11 11 C 1.45206 * 117.00335 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47321 * 179.97438 * 11 10 8 13 13 O 1.21293 * 119.99981 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00244 * 179.97438 * 12 11 10 15 15 C 1.37093 * 120.00621 * 179.97438 * 14 12 11 16 16 H 1.08002 * 119.99186 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00169 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00428 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99836 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47297 * 60.00011 * 19 17 15 21 21 H 1.48504 * 109.46906 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47173 * 299.99748 * 19 17 15 23 23 C 1.37713 * 119.81765 * 180.26266 * 2 1 3 24 24 H 1.08997 * 109.47136 * 89.99363 * 1 2 3 25 25 H 1.08996 * 109.46944 * 209.99970 * 1 2 3 26 26 H 1.09005 * 109.46725 * 329.99736 * 1 2 3 27 27 H 1.08003 * 119.77984 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.96456 * 179.97438 * 4 3 2 29 29 H 0.96997 * 120.00223 * 202.60703 * 6 5 4 30 30 H 0.97007 * 119.99620 * 22.59731 * 6 5 4 31 31 H 1.09000 * 109.46820 * 300.00276 * 11 10 8 32 32 H 1.09001 * 109.46596 * 59.99897 * 11 10 8 33 33 H 0.97008 * 119.99525 * 0.02562 * 14 12 11 34 34 H 0.96999 * 120.00573 * 179.97438 * 18 17 15 35 35 H 1.08005 * 120.04034 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2028 0.0000 4 6 3.5758 1.2176 -0.0005 5 6 4.2850 0.0226 -0.0016 6 7 5.6732 0.0347 -0.0027 7 6 3.5898 -1.1973 -0.0027 8 6 4.3287 -2.4714 -0.0044 9 8 5.5389 -2.4722 0.1060 10 8 3.6633 -3.6362 -0.1341 11 6 4.4560 -4.8527 -0.1280 12 6 3.5476 -6.0451 -0.2817 13 8 2.3498 -5.8855 -0.3866 14 7 4.0661 -7.2890 -0.3037 15 6 3.2396 -8.3739 -0.4430 16 1 2.1730 -8.2317 -0.5356 17 6 3.7742 -9.6562 -0.4651 18 7 5.0720 -9.8291 -0.3529 19 14 2.6480 -11.1344 -0.6556 20 1 1.9092 -11.0315 -1.9397 21 1 3.4590 -12.3784 -0.6500 22 1 1.6808 -11.1683 0.4707 23 6 2.1918 -1.1948 -0.0055 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6499 2.1343 -0.0004 28 1 4.1052 2.1590 -0.0009 29 1 6.1647 -0.7363 -0.3263 30 1 6.1516 0.8144 0.3201 31 1 5.1663 -4.8276 -0.9544 32 1 4.9980 -4.9283 0.8147 33 1 5.0241 -7.4166 -0.2201 34 1 5.4452 -10.7243 -0.3680 35 1 1.6494 -2.1288 -0.0093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113617023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:12 Heat of formation + Delta-G solvation = -120.338668 kcal Electronic energy + Delta-G solvation = -20546.894649 eV Core-core repulsion = 17122.799025 eV Total energy + Delta-G solvation = -3424.095623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.83474 -40.38768 -39.69899 -37.61386 -36.07482 -35.80260 -33.44626 -32.56042 -31.66914 -29.95874 -26.86852 -26.61594 -25.08896 -23.07070 -21.49999 -21.44275 -20.08987 -18.95358 -18.14238 -17.98100 -17.78318 -17.48001 -17.22441 -16.51330 -15.87987 -15.76869 -15.35708 -15.15859 -14.72875 -14.60512 -14.51665 -13.96864 -13.68022 -13.55850 -13.35557 -12.97812 -12.94137 -12.74814 -12.50314 -12.16535 -12.13216 -11.89562 -11.58850 -11.56219 -11.11100 -10.53568 -10.13813 -10.04079 -8.53743 -8.52903 -6.04722 -0.22601 0.55496 1.35175 1.36525 1.44484 1.47416 1.55911 1.85085 2.29238 2.81830 2.96412 3.03832 3.11633 3.63017 3.86190 4.02300 4.05311 4.12614 4.19225 4.36844 4.43509 4.56451 4.82670 4.95330 5.04349 5.15695 5.22964 5.26586 5.35083 5.36729 5.69419 5.86780 5.91526 6.41651 6.47780 6.66319 6.93868 7.00874 7.37391 7.91055 8.63198 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.003431 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.697428 B = 8159.090161 C = 9072.075888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.162 4.162 3 C -0.026 4.026 4 C -0.200 4.200 5 C 0.267 3.733 6 N -0.856 5.856 7 C -0.233 4.233 8 C 0.510 3.490 9 O -0.537 6.537 10 O -0.341 6.341 11 C 0.073 3.927 12 C 0.436 3.564 13 O -0.617 6.617 14 N -0.556 5.556 15 C -0.341 4.341 16 H 0.085 0.915 17 C -0.008 4.008 18 N -0.916 5.916 19 Si 0.999 3.001 20 H -0.269 1.269 21 H -0.269 1.269 22 H -0.269 1.269 23 C -0.034 4.034 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.165 0.835 28 H 0.162 0.838 29 H 0.406 0.594 30 H 0.411 0.589 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.400 0.600 34 H 0.281 0.719 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 22.413 1.005 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.164 4.164 3 C -0.045 4.045 4 C -0.222 4.222 5 C 0.156 3.844 6 N -0.401 5.401 7 C -0.240 4.240 8 C 0.359 3.641 9 O -0.429 6.429 10 O -0.256 6.256 11 C -0.005 4.005 12 C 0.222 3.778 13 O -0.504 6.504 14 N -0.194 5.194 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.209 4.209 18 N -0.555 5.555 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.053 4.053 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.183 0.817 28 H 0.180 0.820 29 H 0.242 0.758 30 H 0.242 0.758 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.234 0.766 34 H 0.091 0.909 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.266 22.259 0.958 22.315 hybrid contribution 0.805 -1.376 -0.019 1.595 sum -0.461 20.882 0.940 20.908 Atomic orbital electron populations 1.20730 0.89365 1.03382 1.02791 1.19948 0.97618 0.92244 1.06557 1.21468 0.93459 0.98322 0.91258 1.21046 0.94739 0.96191 1.10195 1.17884 0.85239 0.91829 0.89414 1.42923 1.02739 1.23550 1.70867 1.18723 0.94291 0.88327 1.22624 1.21588 0.85932 0.84558 0.72017 1.90562 1.15501 1.87667 1.49211 1.86615 1.41239 1.14536 1.83172 1.22514 0.92280 0.80534 1.05133 1.20078 0.88867 0.84510 0.84299 1.90520 1.17262 1.86007 1.56603 1.41720 1.10337 1.03979 1.63320 1.19707 0.92209 0.84960 1.50079 0.89741 1.26141 0.97934 1.01171 0.95634 1.69665 1.11892 1.25145 1.48834 0.84906 0.77597 0.76197 0.79153 1.19440 1.19291 1.19432 1.21239 0.91869 0.99306 0.92909 0.90935 0.92479 0.89413 0.81736 0.82007 0.75798 0.75829 0.87558 0.87697 0.76564 0.90903 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.00 71.24 0.71 -0.99 16 2 C -0.16 -3.34 5.87 -19.89 -0.12 -3.46 16 3 C -0.03 -0.40 9.67 22.30 0.22 -0.19 16 4 C -0.20 -3.25 9.92 22.37 0.22 -3.03 16 5 C 0.27 6.17 6.76 38.74 0.26 6.43 16 6 N -0.86 -17.24 8.54 -50.93 -0.43 -17.67 16 7 C -0.23 -6.93 5.89 -19.99 -0.12 -7.05 16 8 C 0.51 18.03 7.86 70.20 0.55 18.58 16 9 O -0.54 -18.87 13.59 19.77 0.27 -18.60 16 10 O -0.34 -13.84 9.02 -50.39 -0.45 -14.30 16 11 C 0.07 2.90 5.95 71.23 0.42 3.33 16 12 C 0.44 22.07 7.86 87.66 0.69 22.76 16 13 O -0.62 -36.16 16.08 15.73 0.25 -35.90 16 14 N -0.56 -29.22 5.29 -306.99 -1.62 -30.84 16 15 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 16 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 17 C -0.01 -0.43 5.50 84.92 0.47 0.04 16 18 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 19 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 C -0.03 -0.96 9.25 22.52 0.21 -0.75 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 26 H 0.09 0.96 8.08 -2.38 -0.02 0.94 16 27 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 28 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 29 H 0.41 9.77 6.02 -92.71 -0.56 9.22 16 30 H 0.41 5.38 8.90 -92.70 -0.82 4.55 16 31 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.40 19.77 7.90 -92.70 -0.73 19.03 16 34 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 35 H 0.12 3.76 7.63 -2.91 -0.02 3.74 16 Total: -1.00 -71.29 313.27 3.70 -67.59 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.95 Total: 37.10 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 4.33 Total: 17.04 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -1.77 Total: -97.37 kcal Atomic # 8 Polarization: -68.87 SS G_CDS: 0.07 Total: -68.80 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -71.29 3.70 -67.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113617023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.752 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds