Wall clock time and date at job start Mon Mar 30 2020 23:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86791 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47265 * 270.00363 * 3 2 1 5 5 H 1.48503 * 109.47400 * 30.00533 * 3 2 1 6 6 H 1.48508 * 109.47164 * 150.00344 * 3 2 1 7 7 C 1.38946 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99971 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00172 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99926 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.47512 * 179.97438 * 12 10 9 14 14 C 1.34770 * 120.00122 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00256 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00010 * 180.02562 * 14 13 12 17 17 O 1.42902 * 109.47357 * 180.02562 * 16 14 13 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 14 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 0.96999 * 119.99822 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99896 * 359.97438 * 9 7 2 26 26 H 1.09008 * 109.46893 * 60.00374 * 12 10 9 27 27 H 1.09001 * 109.47747 * 300.00344 * 12 10 9 28 28 H 0.96998 * 119.99602 * 0.02562 * 13 12 10 29 29 H 1.08999 * 109.46805 * 59.99992 * 16 14 13 30 30 H 1.08998 * 109.47364 * 300.00344 * 16 14 13 31 31 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 32 32 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 34 34 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 35 35 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1956 -5.9765 -0.0007 14 6 1.7463 -7.2471 -0.0009 15 8 0.5539 -7.4687 -0.0009 16 6 2.7256 -8.3927 -0.0010 17 8 2.0110 -9.6302 -0.0018 18 6 2.7512 -10.7699 -0.0015 19 6 2.1226 -12.0067 -0.0017 20 6 2.8771 -13.1638 -0.0019 21 6 4.2578 -13.0901 -0.0015 22 6 4.8868 -11.8588 -0.0017 23 6 4.1367 -10.6988 -0.0015 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6167 -4.9209 -0.8898 27 1 0.6173 -4.9206 0.8902 28 1 3.1493 -5.7993 -0.0011 29 1 3.3522 -8.3350 0.8890 30 1 3.3523 -8.3348 -0.8910 31 1 1.0441 -12.0647 0.0028 32 1 2.3882 -14.1268 -0.0016 33 1 4.8460 -13.9959 -0.0012 34 1 5.9654 -11.8038 -0.0017 35 1 4.6284 -9.7371 -0.0013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117777416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:09 Heat of formation + Delta-G solvation = -84.084256 kcal Electronic energy + Delta-G solvation = -19883.783568 eV Core-core repulsion = 16461.260054 eV Total energy + Delta-G solvation = -3422.523514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52879 -39.44019 -38.22058 -37.31619 -34.54223 -33.76616 -31.47459 -31.35890 -30.50282 -29.12102 -26.89887 -24.48810 -22.94933 -22.33534 -20.39669 -19.66291 -18.60151 -18.20612 -17.32735 -16.53387 -16.42250 -15.93659 -15.38259 -15.30014 -15.04809 -14.63728 -14.40808 -14.03543 -13.86603 -13.67603 -13.44675 -12.81078 -12.80010 -12.26430 -12.00093 -11.85929 -11.67389 -11.29477 -11.15642 -11.14915 -10.49301 -10.36041 -9.83251 -9.68369 -9.27405 -8.95036 -8.70354 -8.45819 -8.15253 -6.55828 -3.98185 1.07049 1.18845 2.46643 2.60930 3.08599 3.19607 3.24592 3.53404 3.62495 3.67945 4.07541 4.48622 4.61861 4.72372 4.79517 4.82508 4.87389 4.89843 5.11316 5.12592 5.21929 5.37568 5.73963 5.82251 5.88049 5.99602 6.03955 6.13626 6.26618 6.47051 6.52787 7.13100 7.41845 7.62650 7.86702 8.26250 8.39754 8.99720 9.33767 9.81122 10.60896 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.056710 B = 0.002491 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.625227 B =11236.543260 C =11709.722343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.111 3.889 13 N -0.703 5.703 14 C 0.514 3.486 15 O -0.526 6.526 16 C 0.043 3.957 17 O -0.289 6.289 18 C 0.131 3.869 19 C -0.150 4.150 20 C -0.081 4.081 21 C -0.162 4.162 22 C -0.080 4.080 23 C -0.212 4.212 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.412 0.588 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.185 -20.651 0.013 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.017 4.017 13 N -0.359 5.359 14 C 0.298 3.702 15 O -0.402 6.402 16 C -0.036 4.036 17 O -0.201 6.201 18 C 0.086 3.914 19 C -0.169 4.169 20 C -0.099 4.099 21 C -0.181 4.181 22 C -0.098 4.098 23 C -0.231 4.231 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.250 0.750 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.756 -20.573 0.018 21.363 hybrid contribution 0.474 1.093 -0.009 1.192 sum 6.230 -19.480 0.008 20.452 Atomic orbital electron populations 1.69616 1.06029 1.28621 1.49056 1.25345 0.95687 1.00006 0.96688 0.85797 0.79218 0.80401 0.78520 1.20227 1.20765 1.19296 1.19731 0.93473 0.81948 1.48396 0.87627 1.41796 1.09535 1.04474 1.62362 1.19685 0.88273 0.84936 0.85860 1.90493 1.13672 1.86792 1.57565 1.20987 0.91702 0.85431 1.03543 1.45502 1.11884 1.04100 1.74383 1.19880 0.89291 0.83465 0.77602 1.90745 1.16319 1.84525 1.48569 1.22463 0.94430 0.82587 1.04106 1.86161 1.34079 1.11523 1.88315 1.19115 0.90040 0.86479 0.95789 1.20491 1.00879 0.89476 1.06022 1.20979 0.93838 0.97590 0.97523 1.21075 0.94735 0.97746 1.04502 1.20962 0.99798 0.91917 0.97119 1.21332 0.92723 1.00066 1.08930 0.91517 0.76977 0.89584 0.89577 0.74970 0.88746 0.88753 0.84978 0.85352 0.85973 0.85731 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 13.05 55.50 0.72 -22.85 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.26 29.55 -169.99 -5.02 15.23 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.31 -8.18 9.68 -14.93 -0.14 -8.33 16 8 H 0.11 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.31 5.29 -10.96 -0.06 -13.37 16 10 C 0.43 9.51 7.85 -10.99 -0.09 9.42 16 11 O -0.60 -14.82 15.24 5.55 0.08 -14.74 16 12 C 0.11 1.97 6.15 -5.19 -0.03 1.94 16 13 N -0.70 -11.02 5.53 -61.47 -0.34 -11.36 16 14 C 0.51 7.92 7.91 -10.99 -0.09 7.83 16 15 O -0.53 -10.16 16.50 -14.35 -0.24 -10.39 16 16 C 0.04 0.49 5.22 36.01 0.19 0.68 16 17 O -0.29 -3.94 9.67 -39.33 -0.38 -4.32 16 18 C 0.13 1.53 6.69 -39.22 -0.26 1.27 16 19 C -0.15 -1.57 9.99 -39.43 -0.39 -1.96 16 20 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 21 C -0.16 -1.29 10.04 -39.56 -0.40 -1.69 16 22 C -0.08 -0.67 10.04 -39.61 -0.40 -1.06 16 23 C -0.21 -2.04 9.04 -39.44 -0.36 -2.40 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.40 9.28 7.90 -40.82 -0.32 8.95 16 26 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 27 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.41 6.09 7.44 -40.82 -0.30 5.79 16 29 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 30 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.13 1.02 6.30 -52.48 -0.33 0.69 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -32.33 315.24 -6.74 -39.07 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -3.80 Total: 12.80 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -2.46 Total: 5.19 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.33 Total: -47.58 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.53 Total: -29.46 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.33 -6.74 -39.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117777416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.010 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds