Wall clock time and date at job start Mon Mar 30 2020 23:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86791 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47265 * 270.00363 * 3 2 1 5 5 H 1.48503 * 109.47400 * 30.00533 * 3 2 1 6 6 H 1.48508 * 109.47164 * 150.00344 * 3 2 1 7 7 C 1.38946 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99971 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00172 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99926 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.47512 * 179.97438 * 12 10 9 14 14 C 1.34770 * 120.00122 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00256 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00010 * 180.02562 * 14 13 12 17 17 O 1.42902 * 109.47357 * 180.02562 * 16 14 13 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 14 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 0.96999 * 119.99822 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99896 * 359.97438 * 9 7 2 26 26 H 1.09008 * 109.46893 * 60.00374 * 12 10 9 27 27 H 1.09001 * 109.47747 * 300.00344 * 12 10 9 28 28 H 0.96998 * 119.99602 * 0.02562 * 13 12 10 29 29 H 1.08999 * 109.46805 * 59.99992 * 16 14 13 30 30 H 1.08998 * 109.47364 * 300.00344 * 16 14 13 31 31 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 32 32 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 34 34 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 35 35 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1956 -5.9765 -0.0007 14 6 1.7463 -7.2471 -0.0009 15 8 0.5539 -7.4687 -0.0009 16 6 2.7256 -8.3927 -0.0010 17 8 2.0110 -9.6302 -0.0018 18 6 2.7512 -10.7699 -0.0015 19 6 2.1226 -12.0067 -0.0017 20 6 2.8771 -13.1638 -0.0019 21 6 4.2578 -13.0901 -0.0015 22 6 4.8868 -11.8588 -0.0017 23 6 4.1367 -10.6988 -0.0015 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6167 -4.9209 -0.8898 27 1 0.6173 -4.9206 0.8902 28 1 3.1493 -5.7993 -0.0011 29 1 3.3522 -8.3350 0.8890 30 1 3.3523 -8.3348 -0.8910 31 1 1.0441 -12.0647 0.0028 32 1 2.3882 -14.1268 -0.0016 33 1 4.8460 -13.9959 -0.0012 34 1 5.9654 -11.8038 -0.0017 35 1 4.6284 -9.7371 -0.0013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117777416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:08 Heat of formation + Delta-G solvation = -106.643055 kcal Electronic energy + Delta-G solvation = -19884.761791 eV Core-core repulsion = 16461.260054 eV Total energy + Delta-G solvation = -3423.501737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49072 -40.69105 -39.83501 -38.17705 -36.27978 -35.38008 -33.39681 -32.08956 -31.32804 -30.21495 -28.27259 -26.26454 -23.67635 -23.10090 -21.61181 -21.40572 -20.09694 -19.41033 -18.66908 -17.53237 -17.51539 -17.09272 -16.66258 -16.61199 -16.44293 -16.17396 -15.60362 -15.29665 -15.24671 -14.80707 -14.30734 -14.02253 -13.81757 -13.66697 -13.54791 -13.38729 -12.91208 -12.46520 -12.46124 -12.12946 -12.10171 -11.83215 -11.57738 -11.10549 -10.58421 -10.31425 -10.10371 -9.93511 -9.19498 -8.51961 -6.02329 0.41111 0.49122 1.35594 1.39606 1.40400 1.45120 1.56390 1.89258 2.26723 2.60071 2.86258 3.09948 3.15270 3.51409 3.88925 4.01388 4.05513 4.05551 4.19160 4.31726 4.39963 4.40600 4.49339 4.55478 4.73354 5.11023 5.14408 5.35912 5.37652 5.49724 5.62338 5.83809 5.90473 6.30135 6.43737 6.47690 7.01570 7.03321 7.42704 7.92229 8.64856 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.056710 B = 0.002491 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.625227 B =11236.543260 C =11709.722343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.122 3.878 13 N -0.699 5.699 14 C 0.515 3.485 15 O -0.569 6.569 16 C 0.048 3.952 17 O -0.319 6.319 18 C 0.104 3.896 19 C -0.172 4.172 20 C -0.083 4.083 21 C -0.162 4.162 22 C -0.085 4.085 23 C -0.218 4.218 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.419 0.581 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.745 -21.642 0.001 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.106 0.894 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.510 6.510 12 C -0.006 4.006 13 N -0.355 5.355 14 C 0.302 3.698 15 O -0.448 6.448 16 C -0.030 4.030 17 O -0.233 6.233 18 C 0.059 3.941 19 C -0.190 4.190 20 C -0.101 4.101 21 C -0.180 4.180 22 C -0.102 4.102 23 C -0.236 4.236 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.258 0.742 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.329 -21.587 0.005 22.797 hybrid contribution 0.023 1.264 -0.006 1.264 sum 7.352 -20.323 -0.001 21.612 Atomic orbital electron populations 1.69684 1.07038 1.29660 1.49244 1.26150 0.96546 1.02769 0.95787 0.84855 0.77925 0.76427 0.78710 1.19559 1.19765 1.19341 1.19744 0.93007 0.83469 1.50361 0.89405 1.41856 1.09642 1.04658 1.63333 1.20346 0.88115 0.85807 0.83662 1.90471 1.15013 1.87499 1.58048 1.20801 0.91624 0.83702 1.04481 1.45462 1.11782 1.03865 1.74360 1.20546 0.89385 0.83913 0.75969 1.90724 1.18428 1.85073 1.50550 1.22513 0.93137 0.80620 1.06702 1.86097 1.35595 1.12476 1.89117 1.19377 0.91008 0.85988 0.97750 1.20702 1.01074 0.90180 1.07081 1.21296 0.94328 0.97836 0.96632 1.21476 0.94728 0.98806 1.02972 1.21347 1.01132 0.91600 0.96162 1.21575 0.91950 1.01495 1.08609 0.91070 0.76699 0.88633 0.88622 0.74227 0.85993 0.86001 0.85573 0.83053 0.83344 0.83230 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.29 13.05 21.66 0.28 -48.01 16 2 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 3 Si 1.00 41.20 29.55 68.60 2.03 43.23 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.34 -18.22 9.68 84.04 0.81 -17.41 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.56 5.29 -306.99 -1.62 -29.18 16 10 C 0.43 19.36 7.85 87.66 0.69 20.04 16 11 O -0.62 -30.86 15.24 -3.05 -0.05 -30.91 16 12 C 0.12 4.27 6.15 85.63 0.53 4.80 16 13 N -0.70 -21.28 5.53 -466.78 -2.58 -23.86 16 14 C 0.52 15.52 7.91 87.66 0.69 16.22 16 15 O -0.57 -22.08 16.50 16.00 0.26 -21.82 16 16 C 0.05 1.04 5.22 71.24 0.37 1.41 16 17 O -0.32 -8.65 9.67 -73.37 -0.71 -9.36 16 18 C 0.10 2.34 6.69 22.51 0.15 2.49 16 19 C -0.17 -3.55 9.99 22.37 0.22 -3.32 16 20 C -0.08 -1.26 10.04 22.25 0.22 -1.03 16 21 C -0.16 -2.13 10.04 22.28 0.22 -1.90 16 22 C -0.08 -1.18 10.04 22.25 0.22 -0.95 16 23 C -0.22 -3.77 9.04 22.36 0.20 -3.57 16 24 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 25 H 0.40 18.95 7.90 -92.71 -0.73 18.21 16 26 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 27 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.42 11.87 7.44 -92.71 -0.69 11.18 16 29 H 0.12 1.94 7.66 -2.39 -0.02 1.92 16 30 H 0.12 1.94 7.66 -2.39 -0.02 1.92 16 31 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 33 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.15 1.90 6.30 -2.91 -0.02 1.88 16 Total: -1.00 -70.07 315.24 2.14 -67.92 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.28 Total: 35.36 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 4.81 Total: 16.63 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -3.92 Total: -101.05 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: -0.49 Total: -62.09 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -70.07 2.14 -67.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117777416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.719 kcal (2) G-P(sol) polarization free energy of solvation -70.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds