Wall clock time and date at job start Tue Mar 31 2020 00:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 117.00106 * 2 1 4 4 O 1.20825 * 119.99602 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00032 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46613 * 179.97438 * 5 3 2 7 7 C 1.36777 * 120.00258 * 269.99379 * 6 5 3 8 8 H 1.08009 * 119.99771 * 132.69011 * 7 6 5 9 9 C 1.39103 * 120.00605 * 312.69979 * 7 6 5 10 10 N 1.31317 * 120.00524 * 168.23696 * 9 7 6 11 11 Si 1.86806 * 119.99872 * 348.23843 * 9 7 6 12 12 H 1.48497 * 109.46941 * 95.55034 * 11 9 7 13 13 H 1.48494 * 109.47116 * 215.55284 * 11 9 7 14 14 H 1.48507 * 109.46879 * 335.55234 * 11 9 7 15 15 C 1.34777 * 119.99828 * 90.00568 * 6 5 3 16 16 O 1.21572 * 119.99969 * 5.09244 * 15 6 5 17 17 C 1.47998 * 120.00149 * 185.09125 * 15 6 5 18 18 C 1.39413 * 119.73326 * 179.14586 * 17 15 6 19 19 C 1.38546 * 119.05389 * 180.27614 * 18 17 15 20 20 C 1.38666 * 118.49778 * 359.44214 * 19 18 17 21 21 C 1.38555 * 119.36800 * 0.26944 * 20 19 18 22 22 C 1.50696 * 119.54468 * 180.02562 * 21 20 19 23 23 N 1.31529 * 120.91109 * 0.03020 * 21 20 19 24 24 H 1.09006 * 109.46738 * 59.99685 * 1 2 3 25 25 H 1.08997 * 109.47077 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47082 * 300.00139 * 1 2 3 27 27 H 1.08997 * 109.46997 * 60.00369 * 5 3 2 28 28 H 1.08999 * 109.47061 * 300.00374 * 5 3 2 29 29 H 0.97000 * 120.00511 * 185.02135 * 10 9 7 30 30 H 1.07999 * 120.47655 * 359.97438 * 18 17 15 31 31 H 1.07998 * 120.75094 * 179.71124 * 19 18 17 32 32 H 1.07995 * 120.31492 * 180.30102 * 20 19 18 33 33 H 1.08993 * 109.47574 * 84.88526 * 22 21 20 34 34 H 1.09003 * 109.47304 * 204.89017 * 22 21 20 35 35 H 1.09006 * 109.47212 * 324.88744 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1761 3.3349 -1.1850 8 1 3.7491 4.3153 -1.3364 9 6 4.9237 2.7384 -2.1951 10 7 4.9214 3.2512 -3.4040 11 14 5.9310 1.2077 -1.8319 12 1 5.1482 0.0010 -2.2010 13 1 7.1878 1.2432 -2.6220 14 1 6.2577 1.1621 -0.3840 15 6 4.1723 3.3267 1.1667 16 8 4.0903 2.7214 2.2178 17 6 4.4815 4.7740 1.1685 18 6 4.6600 5.4414 2.3795 19 6 4.9432 6.7975 2.3649 20 6 5.0500 7.4380 1.1397 21 6 4.8664 6.7109 -0.0254 22 6 4.9821 7.4029 -1.3591 23 7 4.5924 5.4252 0.0166 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9564 0.7806 -0.8892 28 1 3.9557 0.7809 0.8908 29 1 5.3831 2.7955 -4.1251 30 1 4.5738 4.9100 3.3157 31 1 5.0821 7.3426 3.2869 32 1 5.2747 8.4933 1.0940 33 1 6.0285 7.4348 -1.6623 34 1 4.4046 6.8552 -2.1039 35 1 4.5968 8.4191 -1.2759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120487550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:33 Heat of formation + Delta-G solvation = -71.768251 kcal Electronic energy + Delta-G solvation = -22066.980498 eV Core-core repulsion = 18644.991046 eV Total energy + Delta-G solvation = -3421.989452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.90390 -41.22786 -39.86574 -37.63634 -36.81493 -33.94679 -33.77353 -33.36113 -30.55997 -28.57480 -27.98234 -27.00257 -24.96892 -23.14949 -22.37287 -21.20900 -19.70723 -18.98495 -18.46755 -17.53429 -17.39057 -17.12283 -16.97887 -16.37278 -16.14682 -16.03643 -15.04319 -14.94724 -14.69990 -14.55563 -14.37595 -14.03852 -13.82593 -13.51016 -13.13170 -13.01285 -12.97156 -12.95228 -12.67390 -12.34119 -11.98066 -11.84622 -11.70468 -11.28800 -10.95186 -10.70730 -10.18157 -9.82577 -9.45481 -8.29877 -6.07205 -0.18383 0.47555 1.07372 1.17828 1.30959 1.38848 1.45121 1.96474 2.18562 2.41156 2.95755 3.11009 3.45006 3.80410 3.88761 3.93130 4.02513 4.14323 4.21909 4.25068 4.28793 4.29753 4.63193 4.64542 4.76124 4.84183 4.88614 5.21323 5.22951 5.24349 5.32735 5.36756 5.84971 6.08576 6.54893 6.67234 6.88288 7.20232 7.35334 7.57985 8.76754 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.007792 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.829029 B = 3592.387409 C = 4456.417730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.455 3.545 4 O -0.523 6.523 5 C 0.097 3.903 6 N -0.442 5.442 7 C -0.305 4.305 8 H 0.113 0.887 9 C 0.025 3.975 10 N -0.898 5.898 11 Si 0.903 3.097 12 H -0.245 1.245 13 H -0.280 1.280 14 H -0.262 1.262 15 C 0.527 3.473 16 O -0.604 6.604 17 C 0.065 3.935 18 C -0.138 4.138 19 C -0.077 4.077 20 C -0.144 4.144 21 C 0.088 3.912 22 C -0.094 4.094 23 N -0.439 5.439 24 H 0.057 0.943 25 H 0.143 0.857 26 H 0.059 0.941 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.277 0.723 30 H 0.143 0.857 31 H 0.183 0.817 32 H 0.179 0.821 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 2.784 6.689 7.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.297 3.703 4 O -0.411 6.411 5 C -0.027 4.027 6 N -0.161 5.161 7 C -0.434 4.434 8 H 0.130 0.870 9 C -0.178 4.178 10 N -0.536 5.536 11 Si 0.728 3.272 12 H -0.171 1.171 13 H -0.207 1.207 14 H -0.186 1.186 15 C 0.319 3.681 16 O -0.490 6.490 17 C -0.072 4.072 18 C -0.159 4.159 19 C -0.102 4.102 20 C -0.164 4.164 21 C -0.052 4.052 22 C -0.151 4.151 23 N -0.151 5.151 24 H 0.076 0.924 25 H 0.161 0.839 26 H 0.078 0.922 27 H 0.128 0.872 28 H 0.147 0.853 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.200 0.800 32 H 0.196 0.804 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.263 2.285 6.226 6.752 hybrid contribution 0.255 -0.449 0.301 0.597 sum -1.009 1.837 6.527 6.855 Atomic orbital electron populations 1.23584 0.74695 1.05985 1.02264 1.86487 1.25265 1.32067 1.84043 1.24456 0.92592 0.81715 0.71581 1.90610 1.67233 1.37597 1.45700 1.21503 0.87772 0.87550 1.05896 1.43374 1.57202 1.08965 1.06555 1.19582 1.30645 1.04019 0.89138 0.87005 1.25968 0.96501 1.00317 0.95004 1.69644 1.42821 1.40425 1.00706 0.86440 0.80114 0.81221 0.79456 1.17051 1.20654 1.18641 1.18669 0.78847 0.87432 0.83194 1.90582 1.57934 1.68426 1.32075 1.20962 1.01770 0.93839 0.90648 1.22220 0.99241 0.96528 0.97914 1.21947 0.95585 0.92540 1.00160 1.22567 0.99111 1.02887 0.91789 1.22216 0.95239 0.89801 0.97987 1.20691 1.03136 0.99998 0.91283 1.68500 1.09294 1.09539 1.27800 0.92429 0.83942 0.92227 0.87171 0.85342 0.91292 0.83943 0.80022 0.80415 0.90030 0.93222 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -13.08 10.57 -51.45 -0.54 -13.62 16 3 C 0.45 20.36 8.02 71.24 0.57 20.93 16 4 O -0.52 -26.76 16.18 21.97 0.36 -26.40 16 5 C 0.10 4.44 4.70 85.63 0.40 4.85 16 6 N -0.44 -23.08 1.52 -642.74 -0.98 -24.06 16 7 C -0.30 -17.09 8.08 84.13 0.68 -16.41 16 8 H 0.11 6.91 5.97 -2.91 -0.02 6.89 16 9 C 0.03 1.37 5.41 84.98 0.46 1.83 16 10 N -0.90 -51.07 13.95 21.69 0.30 -50.77 16 11 Si 0.90 41.25 24.84 68.60 1.70 42.95 16 12 H -0.25 -10.13 6.87 99.48 0.68 -9.45 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 14 H -0.26 -12.03 7.03 99.48 0.70 -11.33 16 15 C 0.53 27.21 7.61 86.83 0.66 27.87 16 16 O -0.60 -31.44 15.88 -3.94 -0.06 -31.50 16 17 C 0.07 3.02 6.66 41.87 0.28 3.30 16 18 C -0.14 -4.98 9.63 22.63 0.22 -4.77 16 19 C -0.08 -2.02 10.17 22.45 0.23 -1.79 16 20 C -0.14 -3.77 9.77 22.45 0.22 -3.55 16 21 C 0.09 3.15 6.78 42.68 0.29 3.44 16 22 C -0.09 -2.87 10.14 71.23 0.72 -2.15 16 23 N -0.44 -20.43 6.20 -173.12 -1.07 -21.50 16 24 H 0.06 1.60 8.13 -2.38 -0.02 1.58 16 25 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.06 1.60 8.13 -2.39 -0.02 1.59 16 27 H 0.11 4.87 3.82 -2.39 -0.01 4.86 16 28 H 0.13 5.41 7.36 -2.39 -0.02 5.39 16 29 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.14 4.89 7.64 -2.91 -0.02 4.87 16 31 H 0.18 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.11 2.29 8.11 -2.38 -0.02 2.27 16 Total: -1.00 -75.16 305.71 6.72 -68.44 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 1.09 Total: 20.98 kcal Atomic # 6 Polarization: 29.56 SS G_CDS: 5.93 Total: 35.48 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -1.75 Total: -96.33 kcal Atomic # 8 Polarization: -71.28 SS G_CDS: -0.25 Total: -71.53 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.70 Total: 42.95 kcal Total: -75.16 6.72 -68.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120487550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.327 kcal (2) G-P(sol) polarization free energy of solvation -75.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds