Wall clock time and date at job start Tue Mar 31 2020 00:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00224 * 2 1 4 4 O 1.20826 * 119.99976 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99820 * 179.97438 * 3 2 1 6 6 N 1.46494 * 109.46856 * 180.02562 * 5 3 2 7 7 C 1.36882 * 120.00171 * 75.31704 * 6 5 3 8 8 H 1.07993 * 119.99721 * 36.34774 * 7 6 5 9 9 C 1.39047 * 119.99994 * 216.62996 * 7 6 5 10 10 N 1.31368 * 119.99978 * 23.67167 * 9 7 6 11 11 Si 1.86795 * 119.99968 * 203.66865 * 9 7 6 12 12 H 1.48501 * 109.47275 * 89.99859 * 11 9 7 13 13 H 1.48502 * 109.47251 * 210.00382 * 11 9 7 14 14 H 1.48498 * 109.47142 * 329.99945 * 11 9 7 15 15 C 1.34776 * 120.00459 * 255.31322 * 6 5 3 16 16 O 1.21591 * 120.00395 * 182.01498 * 15 6 5 17 17 C 1.47721 * 119.99560 * 2.01176 * 15 6 5 18 18 C 1.40090 * 120.56994 * 218.86732 * 17 15 6 19 19 C 1.38329 * 118.28923 * 179.97438 * 18 17 15 20 20 C 1.38369 * 119.30879 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.45483 * 179.97438 * 20 19 18 22 22 N 1.31940 * 121.09678 * 0.02562 * 20 19 18 23 23 C 1.31685 * 121.88063 * 359.71786 * 22 20 19 24 24 H 1.09004 * 109.46742 * 59.99343 * 1 2 3 25 25 H 1.08995 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46986 * 300.00240 * 1 2 3 27 27 H 1.09002 * 109.47221 * 60.00378 * 5 3 2 28 28 H 1.08999 * 109.47191 * 300.00025 * 5 3 2 29 29 H 0.96998 * 119.99771 * 184.90550 * 10 9 7 30 30 H 1.08005 * 120.85122 * 359.97438 * 18 17 15 31 31 H 1.08002 * 120.34552 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.46946 * 90.00284 * 21 20 19 33 33 H 1.08995 * 109.47350 * 210.00743 * 21 20 19 34 34 H 1.09005 * 109.47205 * 330.00515 * 21 20 19 35 35 H 1.07997 * 119.71856 * 180.27225 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 3.8873 3.4208 1.1479 8 1 4.0875 2.9625 2.1051 9 6 3.5278 4.7624 1.0810 10 7 2.8455 5.2089 0.0511 11 14 4.0152 5.9296 2.4556 12 1 5.3407 6.5261 2.1518 13 1 3.0015 7.0086 2.5714 14 1 4.0907 5.1819 3.7364 15 6 4.4571 3.2422 -1.1276 16 8 4.8361 4.3975 -1.1181 17 6 4.5176 2.4553 -2.3763 18 6 5.6053 2.5867 -3.2493 19 6 5.6139 1.8266 -4.4050 20 6 4.5585 0.9688 -4.6594 21 6 4.5641 0.1396 -5.9178 22 7 3.5466 0.8653 -3.8189 23 6 3.4947 1.5635 -2.7036 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9565 0.7805 -0.8892 28 1 3.9558 0.7808 0.8908 29 1 2.6561 6.1567 -0.0311 30 1 6.4163 3.2640 -3.0256 31 1 6.4358 1.9021 -5.1016 32 1 5.0571 -0.8128 -5.7231 33 1 3.5382 -0.0411 -6.2385 34 1 5.1013 0.6731 -6.7020 35 1 2.6517 1.4481 -2.0385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120518158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:38 Heat of formation + Delta-G solvation = -50.513595 kcal Electronic energy + Delta-G solvation = -22201.814797 eV Core-core repulsion = 18780.747016 eV Total energy + Delta-G solvation = -3421.067781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39350 -39.53311 -37.96512 -35.78851 -34.18920 -32.94792 -31.97539 -31.64652 -28.51611 -27.86372 -26.32107 -24.66034 -23.24827 -22.15842 -20.77117 -19.61612 -17.36277 -17.06452 -16.55149 -16.48700 -15.79037 -15.46039 -15.30262 -14.68843 -14.33556 -13.89617 -13.86286 -13.26625 -13.05466 -12.76867 -12.58868 -12.47507 -12.20930 -12.10434 -11.67157 -11.63867 -11.47239 -11.14854 -10.86399 -10.61940 -10.24413 -10.22137 -9.74213 -9.50294 -9.34278 -8.91758 -8.59656 -8.22496 -7.32608 -6.14455 -3.88175 1.22134 1.58060 2.92230 3.14787 3.33311 3.39666 3.41755 3.87091 4.22514 4.45324 4.53263 4.75749 4.96758 5.23228 5.25860 5.37144 5.39550 5.46402 5.50474 5.58483 5.60483 5.64508 5.68858 5.74114 5.86532 5.91960 6.00394 6.12810 6.39775 6.57376 6.95298 6.97376 7.51605 8.06904 8.24137 8.50869 8.84905 8.98965 9.48208 10.05363 10.91085 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.007706 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.285609 B = 3632.855436 C = 5054.152992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.374 6.374 3 C 0.420 3.580 4 O -0.451 6.451 5 C 0.100 3.900 6 N -0.420 5.420 7 C -0.349 4.349 8 H 0.087 0.913 9 C 0.076 3.924 10 N -0.793 5.793 11 Si 0.910 3.090 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.508 3.492 16 O -0.516 6.516 17 C -0.148 4.148 18 C -0.038 4.038 19 C -0.176 4.176 20 C 0.114 3.886 21 C -0.099 4.099 22 N -0.486 5.486 23 C 0.113 3.887 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.265 0.735 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -11.317 -6.013 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.292 6.292 3 C 0.258 3.742 4 O -0.332 6.332 5 C -0.026 4.026 6 N -0.141 5.141 7 C -0.474 4.474 8 H 0.105 0.895 9 C -0.138 4.138 10 N -0.424 5.424 11 Si 0.736 3.264 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.198 1.198 15 C 0.296 3.704 16 O -0.393 6.393 17 C -0.154 4.154 18 C -0.065 4.065 19 C -0.196 4.196 20 C -0.024 4.024 21 C -0.156 4.156 22 N -0.196 5.196 23 C -0.045 4.045 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.897 -10.785 -6.256 12.500 hybrid contribution 0.359 1.254 0.833 1.548 sum 1.256 -9.531 -5.423 11.037 Atomic orbital electron populations 1.23093 0.77844 1.02592 1.02209 1.86545 1.22430 1.34960 1.85304 1.25028 0.93292 0.81507 0.74365 1.90818 1.65966 1.35465 1.40983 1.21603 0.86651 0.89656 1.04711 1.43086 1.53343 1.07133 1.10513 1.19054 1.49853 0.93426 0.85107 0.89518 1.25124 0.92949 0.98581 0.97188 1.69991 1.27953 1.14723 1.29726 0.86246 0.78582 0.80341 0.81185 1.20231 1.21324 1.19776 1.17428 0.83508 0.87170 0.82322 1.90632 1.49231 1.16116 1.83361 1.21551 0.96431 0.98697 0.98688 1.21613 0.97016 0.95848 0.91991 1.21826 1.00229 0.98880 0.98622 1.21311 0.90126 0.95216 0.95700 1.20661 1.03438 0.98769 0.92775 1.67458 1.25121 1.23678 1.03300 1.23114 0.97147 0.91213 0.93039 0.92413 0.88934 0.92374 0.87907 0.87979 0.92469 0.84254 0.84873 0.90669 0.90718 0.91009 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.48 10.57 -39.26 -0.41 -6.89 16 3 C 0.42 8.72 5.74 36.01 0.21 8.93 16 4 O -0.45 -11.33 15.70 -18.75 -0.29 -11.62 16 5 C 0.10 2.00 5.46 -5.20 -0.03 1.97 16 6 N -0.42 -10.49 2.24 -117.22 -0.26 -10.75 16 7 C -0.35 -9.48 8.69 -15.00 -0.13 -9.61 16 8 H 0.09 2.23 7.94 -52.49 -0.42 1.81 16 9 C 0.08 2.15 4.20 -17.45 -0.07 2.07 16 10 N -0.79 -23.95 11.49 55.50 0.64 -23.31 16 11 Si 0.91 21.89 29.62 -169.99 -5.03 16.86 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.51 13.06 6.65 -12.39 -0.08 12.98 16 16 O -0.52 -15.19 14.26 5.29 0.08 -15.11 16 17 C -0.15 -3.15 5.18 -104.82 -0.54 -3.69 16 18 C -0.04 -0.68 9.79 -38.85 -0.38 -1.06 16 19 C -0.18 -2.57 9.72 -39.50 -0.38 -2.95 16 20 C 0.11 1.73 6.78 -82.50 -0.56 1.17 16 21 C -0.10 -1.05 10.16 36.01 0.37 -0.69 16 22 N -0.49 -8.78 10.25 -9.11 -0.09 -8.88 16 23 C 0.11 2.26 8.57 -17.11 -0.15 2.11 16 24 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 27 H 0.10 1.85 4.84 -51.93 -0.25 1.60 16 28 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.14 2.37 8.06 -52.48 -0.42 1.95 16 31 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.15 3.16 4.43 -52.49 -0.23 2.93 16 LS Contribution 305.50 15.07 4.60 4.60 Total: -1.00 -35.42 305.50 -5.31 -40.73 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.84 Total: 1.54 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -0.69 Total: 12.83 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.28 Total: -42.94 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.63 Total: -33.63 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.42 -5.31 -40.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120518158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.781 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds