Wall clock time and date at job start Tue Mar 31 2020 00:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00224 * 2 1 4 4 O 1.20826 * 119.99976 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99820 * 179.97438 * 3 2 1 6 6 N 1.46494 * 109.46856 * 180.02562 * 5 3 2 7 7 C 1.36882 * 120.00171 * 75.31704 * 6 5 3 8 8 H 1.07993 * 119.99721 * 36.34774 * 7 6 5 9 9 C 1.39047 * 119.99994 * 216.62996 * 7 6 5 10 10 N 1.31368 * 119.99978 * 23.67167 * 9 7 6 11 11 Si 1.86795 * 119.99968 * 203.66865 * 9 7 6 12 12 H 1.48501 * 109.47275 * 89.99859 * 11 9 7 13 13 H 1.48502 * 109.47251 * 210.00382 * 11 9 7 14 14 H 1.48498 * 109.47142 * 329.99945 * 11 9 7 15 15 C 1.34776 * 120.00459 * 255.31322 * 6 5 3 16 16 O 1.21591 * 120.00395 * 182.01498 * 15 6 5 17 17 C 1.47721 * 119.99560 * 2.01176 * 15 6 5 18 18 C 1.40090 * 120.56994 * 218.86732 * 17 15 6 19 19 C 1.38329 * 118.28923 * 179.97438 * 18 17 15 20 20 C 1.38369 * 119.30879 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.45483 * 179.97438 * 20 19 18 22 22 N 1.31940 * 121.09678 * 0.02562 * 20 19 18 23 23 C 1.31685 * 121.88063 * 359.71786 * 22 20 19 24 24 H 1.09004 * 109.46742 * 59.99343 * 1 2 3 25 25 H 1.08995 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46986 * 300.00240 * 1 2 3 27 27 H 1.09002 * 109.47221 * 60.00378 * 5 3 2 28 28 H 1.08999 * 109.47191 * 300.00025 * 5 3 2 29 29 H 0.96998 * 119.99771 * 184.90550 * 10 9 7 30 30 H 1.08005 * 120.85122 * 359.97438 * 18 17 15 31 31 H 1.08002 * 120.34552 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.46946 * 90.00284 * 21 20 19 33 33 H 1.08995 * 109.47350 * 210.00743 * 21 20 19 34 34 H 1.09005 * 109.47205 * 330.00515 * 21 20 19 35 35 H 1.07997 * 119.71856 * 180.27225 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 3.8873 3.4208 1.1479 8 1 4.0875 2.9625 2.1051 9 6 3.5278 4.7624 1.0810 10 7 2.8455 5.2089 0.0511 11 14 4.0152 5.9296 2.4556 12 1 5.3407 6.5261 2.1518 13 1 3.0015 7.0086 2.5714 14 1 4.0907 5.1819 3.7364 15 6 4.4571 3.2422 -1.1276 16 8 4.8361 4.3975 -1.1181 17 6 4.5176 2.4553 -2.3763 18 6 5.6053 2.5867 -3.2493 19 6 5.6139 1.8266 -4.4050 20 6 4.5585 0.9688 -4.6594 21 6 4.5641 0.1396 -5.9178 22 7 3.5466 0.8653 -3.8189 23 6 3.4947 1.5635 -2.7036 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9565 0.7805 -0.8892 28 1 3.9558 0.7808 0.8908 29 1 2.6561 6.1567 -0.0311 30 1 6.4163 3.2640 -3.0256 31 1 6.4358 1.9021 -5.1016 32 1 5.0571 -0.8128 -5.7231 33 1 3.5382 -0.0411 -6.2385 34 1 5.1013 0.6731 -6.7020 35 1 2.6517 1.4481 -2.0385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120518158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:36 Heat of formation + Delta-G solvation = -75.266451 kcal Electronic energy + Delta-G solvation = -22202.888161 eV Core-core repulsion = 18780.747016 eV Total energy + Delta-G solvation = -3422.141145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96798 -41.03852 -39.72409 -37.42343 -36.10077 -34.55555 -33.44175 -33.26613 -30.11008 -29.16152 -27.75534 -26.47484 -24.65634 -23.62657 -22.36397 -21.35996 -19.16249 -18.67603 -18.21881 -18.06103 -17.20221 -17.08167 -16.72115 -16.55471 -15.96189 -15.42983 -15.25945 -14.90052 -14.53868 -14.19772 -14.15175 -14.02606 -13.56492 -13.30619 -13.05599 -12.97729 -12.93522 -12.77732 -12.70824 -12.61832 -12.10059 -11.69432 -11.49114 -11.02241 -10.87237 -10.75630 -10.24779 -9.82508 -9.35085 -8.22361 -5.98877 -0.18578 0.20128 1.28878 1.38535 1.45683 1.51167 1.64901 2.30005 2.36801 2.79938 2.90048 3.26796 3.28864 3.74849 3.82608 3.89337 4.02262 4.06675 4.18992 4.34531 4.37585 4.39571 4.46627 4.61348 4.70896 4.77977 4.88538 5.09226 5.18034 5.22807 5.42729 5.43209 5.68696 6.03928 6.84012 6.87342 6.91615 7.04142 7.48456 8.11335 8.83848 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.007706 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.285609 B = 3632.855436 C = 5054.152992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.430 3.570 4 O -0.503 6.503 5 C 0.099 3.901 6 N -0.435 5.435 7 C -0.364 4.364 8 H 0.096 0.904 9 C 0.024 3.976 10 N -0.840 5.840 11 Si 0.970 3.030 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.250 1.250 15 C 0.502 3.498 16 O -0.568 6.568 17 C -0.180 4.180 18 C -0.042 4.042 19 C -0.156 4.156 20 C 0.122 3.878 21 C -0.097 4.097 22 N -0.498 5.498 23 C 0.109 3.891 24 H 0.050 0.950 25 H 0.140 0.860 26 H 0.053 0.947 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.256 0.744 30 H 0.142 0.858 31 H 0.183 0.817 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.894 -13.972 -7.582 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.271 3.729 4 O -0.388 6.388 5 C -0.026 4.026 6 N -0.155 5.155 7 C -0.490 4.490 8 H 0.114 0.886 9 C -0.185 4.185 10 N -0.474 5.474 11 Si 0.795 3.205 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.173 1.173 15 C 0.292 3.708 16 O -0.449 6.449 17 C -0.186 4.186 18 C -0.068 4.068 19 C -0.175 4.175 20 C -0.016 4.016 21 C -0.154 4.154 22 N -0.208 5.208 23 C -0.048 4.048 24 H 0.069 0.931 25 H 0.158 0.842 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.065 0.935 30 H 0.160 0.840 31 H 0.201 0.799 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.001 -13.520 -7.796 15.735 hybrid contribution 0.032 1.828 1.116 2.142 sum 2.033 -11.692 -6.681 13.618 Atomic orbital electron populations 1.23458 0.75624 1.05519 1.01720 1.86510 1.24435 1.32701 1.84443 1.24964 0.93498 0.81592 0.72858 1.90811 1.67037 1.37313 1.43687 1.21738 0.86558 0.87247 1.07076 1.43180 1.53598 1.08691 1.10005 1.19392 1.49296 0.94033 0.86286 0.88624 1.26030 0.92851 1.00430 0.99214 1.70138 1.30642 1.14079 1.32523 0.85310 0.77410 0.78364 0.79433 1.21055 1.21508 1.17338 1.18153 0.82015 0.86939 0.83726 1.90571 1.51289 1.18406 1.84621 1.21252 0.98960 1.00233 0.98132 1.21817 0.96099 0.96340 0.92578 1.22303 1.01139 0.96575 0.97526 1.22248 0.88771 0.94507 0.96106 1.20849 1.04348 0.99344 0.90884 1.67547 1.26578 1.23694 1.03011 1.22790 0.96391 0.91682 0.93932 0.93111 0.84183 0.92821 0.85849 0.85091 0.93517 0.84014 0.79935 0.88317 0.90773 0.87850 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.01 16 2 O -0.36 -12.24 10.57 -51.43 -0.54 -12.78 16 3 C 0.43 18.09 5.74 71.24 0.41 18.50 16 4 O -0.50 -26.27 15.70 21.96 0.34 -25.93 16 5 C 0.10 3.97 5.46 85.63 0.47 4.44 16 6 N -0.43 -22.38 2.24 -643.03 -1.44 -23.82 16 7 C -0.36 -20.36 8.69 84.10 0.73 -19.63 16 8 H 0.10 4.99 7.94 -2.91 -0.02 4.96 16 9 C 0.02 1.39 4.20 84.96 0.36 1.75 16 10 N -0.84 -53.61 11.49 21.68 0.25 -53.36 16 11 Si 0.97 46.59 29.62 68.60 2.03 48.62 16 12 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 14 H -0.25 -10.89 7.11 99.48 0.71 -10.18 16 15 C 0.50 26.87 6.65 86.75 0.58 27.45 16 16 O -0.57 -35.15 14.26 -4.00 -0.06 -35.21 16 17 C -0.18 -7.75 5.18 -19.99 -0.10 -7.85 16 18 C -0.04 -1.45 9.79 22.74 0.22 -1.23 16 19 C -0.16 -3.95 9.72 22.32 0.22 -3.74 16 20 C 0.12 3.23 6.78 42.57 0.29 3.52 16 21 C -0.10 -1.55 10.16 71.24 0.72 -0.83 16 22 N -0.50 -17.06 10.25 -182.75 -1.87 -18.93 16 23 C 0.11 4.37 8.57 85.04 0.73 5.10 16 24 H 0.05 1.45 8.13 -2.38 -0.02 1.43 16 25 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 27 H 0.12 4.42 4.84 -2.39 -0.01 4.41 16 28 H 0.13 4.39 8.14 -2.39 -0.02 4.37 16 29 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 30 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.08 8.07 -2.38 -0.02 1.06 16 35 H 0.13 5.71 4.43 -2.91 -0.01 5.70 16 Total: -1.00 -83.03 305.50 5.64 -77.38 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.12 Total: 14.53 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 5.81 Total: 29.49 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -3.07 Total: -96.11 kcal Atomic # 8 Polarization: -73.66 SS G_CDS: -0.26 Total: -73.92 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -83.03 5.64 -77.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120518158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.117 kcal (2) G-P(sol) polarization free energy of solvation -83.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds