Wall clock time and date at job start Tue Mar 31 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38245 * 119.94166 * 2 1 4 4 C 1.38426 * 120.35217 * 179.97438 * 3 2 1 5 5 C 1.37879 * 120.22941 * 0.04907 * 4 3 2 6 6 C 1.39681 * 119.86869 * 359.70021 * 5 4 3 7 7 C 1.47568 * 120.17432 * 180.29859 * 6 5 4 8 8 O 1.21485 * 119.99927 * 174.10725 * 7 6 5 9 9 O 1.34722 * 119.99581 * 354.10926 * 7 6 5 10 10 C 1.45208 * 116.99852 * 184.41602 * 9 7 6 11 11 C 1.52991 * 109.47262 * 184.23269 * 10 9 7 12 12 C 1.50710 * 115.54989 * 306.66694 * 11 10 9 13 13 H 1.07991 * 119.99910 * 144.83793 * 12 11 10 14 14 C 1.37873 * 119.99552 * 324.83975 * 12 11 10 15 15 N 1.31510 * 120.00442 * 350.82520 * 14 12 11 16 16 Si 1.86802 * 119.99804 * 170.82746 * 14 12 11 17 17 H 1.48503 * 109.47129 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47418 * 119.99812 * 16 14 12 19 19 H 1.48495 * 109.47331 * 240.00143 * 16 14 12 20 20 C 1.52999 * 117.50139 * 160.99995 * 11 10 9 21 21 C 1.52998 * 117.50336 * 92.33801 * 11 10 9 22 22 C 1.38279 * 119.93992 * 180.02562 * 2 1 3 23 23 F 1.35103 * 120.11239 * 359.95497 * 22 2 1 24 24 H 1.09001 * 109.47153 * 269.97455 * 1 2 3 25 25 H 1.08993 * 109.46930 * 29.97826 * 1 2 3 26 26 H 1.09002 * 109.46971 * 149.97855 * 1 2 3 27 27 H 1.07997 * 119.82216 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.88890 * 180.02562 * 4 3 2 29 29 H 1.07997 * 120.07218 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.46439 * 304.23059 * 10 9 7 31 31 H 1.08994 * 109.47306 * 64.22559 * 10 9 7 32 32 H 0.97004 * 120.00150 * 185.01948 * 15 14 12 33 33 H 1.08997 * 117.49992 * 359.97438 * 20 11 10 34 34 H 1.09002 * 117.50416 * 145.01889 * 20 11 10 35 35 H 1.09005 * 117.49969 * 214.98480 * 21 11 10 36 36 H 1.09005 * 117.49864 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1979 0.0000 4 6 3.5812 1.2079 0.0005 5 6 4.2839 0.0216 0.0001 6 6 3.5963 -1.1943 0.0054 7 6 4.3416 -2.4679 0.0115 8 8 3.7451 -3.5202 0.1241 9 8 5.6835 -2.4636 -0.1077 10 6 6.3419 -3.7550 -0.1930 11 6 7.8583 -3.5538 -0.2167 12 6 8.3718 -2.6054 -1.2694 13 1 9.2222 -1.9740 -1.0588 14 6 7.7557 -2.5439 -2.5013 15 7 6.8409 -3.4319 -2.8242 16 14 8.2204 -1.1993 -3.7119 17 1 9.2667 -0.3330 -3.1119 18 1 8.7418 -1.8145 -4.9589 19 1 7.0220 -0.3812 -4.0272 20 6 8.7361 -4.7550 0.1405 21 6 8.5968 -3.5893 1.1228 22 6 2.1971 -1.1983 -0.0005 23 9 1.5227 -2.3689 -0.0001 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6532 2.1310 0.0004 28 1 4.1127 2.1480 0.0009 29 1 5.3638 0.0323 0.0001 30 1 6.0690 -4.3596 0.6720 31 1 6.0284 -4.2631 -1.1048 32 1 6.4600 -3.4334 -3.7163 33 1 8.2332 -5.6885 0.3928 34 1 9.6851 -4.8592 -0.3856 35 1 9.4542 -2.9269 1.2425 36 1 8.0022 -3.7556 2.0211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121540919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:14 Heat of formation + Delta-G solvation = -81.864743 kcal Electronic energy + Delta-G solvation = -21553.566363 eV Core-core repulsion = 18111.219133 eV Total energy + Delta-G solvation = -3442.347230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -48.73597 -39.75989 -38.56654 -36.69752 -34.99124 -33.02337 -32.17598 -30.79901 -27.24463 -26.56639 -25.42284 -23.86705 -21.76280 -21.26702 -20.27220 -19.19179 -17.48226 -16.94565 -16.72955 -16.17244 -15.81281 -15.43532 -15.13288 -14.67090 -14.55519 -13.88700 -13.54645 -13.47717 -13.13485 -13.07090 -12.61376 -12.21247 -12.11473 -11.77712 -11.68903 -11.46470 -11.24599 -11.01572 -10.82726 -10.50799 -10.35541 -9.96225 -9.49727 -9.45586 -9.08260 -8.97390 -8.78759 -8.64110 -8.15720 -6.05502 -4.11390 0.75101 1.16365 2.95498 3.24365 3.33562 3.36801 3.38826 3.82236 4.22915 4.34512 4.57594 4.78568 4.90719 5.01340 5.15465 5.21377 5.43789 5.46660 5.57387 5.69070 5.85530 5.98113 6.04015 6.13993 6.21031 6.25787 6.33342 6.46158 6.61854 6.63546 6.77641 6.82086 6.96120 7.23918 7.39851 7.48871 7.88171 8.31562 8.58608 8.85026 9.49249 10.95574 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.005922 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.268597 B = 4727.010505 C = 5425.643455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.141 4.141 3 C -0.068 4.068 4 C -0.143 4.143 5 C -0.036 4.036 6 C -0.145 4.145 7 C 0.498 3.502 8 O -0.513 6.513 9 O -0.316 6.316 10 C 0.117 3.883 11 C 0.047 3.953 12 C -0.482 4.482 13 H 0.063 0.937 14 C 0.075 3.925 15 N -0.883 5.883 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.281 1.281 20 C -0.192 4.192 21 C -0.209 4.209 22 C 0.155 3.845 23 F -0.115 7.115 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.153 0.847 30 H 0.028 0.972 31 H 0.114 0.886 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 9.249 5.082 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.142 4.142 3 C -0.086 4.086 4 C -0.161 4.161 5 C -0.054 4.054 6 C -0.147 4.147 7 C 0.342 3.658 8 O -0.404 6.404 9 O -0.230 6.230 10 C 0.044 3.956 11 C 0.046 3.954 12 C -0.519 4.519 13 H 0.081 0.919 14 C -0.128 4.128 15 N -0.520 5.520 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.207 1.207 20 C -0.230 4.230 21 C -0.247 4.247 22 C 0.135 3.865 23 F -0.093 7.093 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.171 0.829 30 H 0.046 0.954 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.644 8.852 4.982 14.007 hybrid contribution 0.210 0.200 -0.689 0.747 sum -9.434 9.052 4.293 13.762 Atomic orbital electron populations 1.20692 0.89762 1.03407 1.02800 1.19837 0.97199 0.91479 1.05684 1.21100 0.94270 0.96868 0.96348 1.21199 0.93985 0.98531 1.02377 1.21574 1.01792 0.90105 0.91961 1.19460 0.91373 0.93741 1.10145 1.20719 0.82902 0.88175 0.74051 1.90808 1.70303 1.33084 1.46246 1.86518 1.17675 1.37778 1.81063 1.22865 0.91473 0.79840 1.01381 1.18903 0.87744 0.96252 0.92469 1.20455 1.14240 1.20533 0.96636 0.91879 1.24938 0.94175 0.95573 0.98149 1.69786 1.28094 1.34251 1.19900 0.86490 0.78394 0.82157 0.80739 1.19583 1.21049 1.20731 1.22968 1.02973 0.92504 1.04583 1.22970 1.04218 1.03158 0.94317 1.17558 0.88298 0.81612 0.99038 1.91563 1.79531 1.45467 1.92778 0.90830 0.90897 0.91085 0.84760 0.84586 0.82895 0.95382 0.86850 0.92724 0.91445 0.89743 0.90278 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.83 36.01 0.35 -0.71 16 2 C -0.14 -1.81 5.88 -104.60 -0.62 -2.42 16 3 C -0.07 -0.73 9.69 -39.51 -0.38 -1.11 16 4 C -0.14 -1.69 10.03 -39.64 -0.40 -2.09 16 5 C -0.04 -0.56 9.61 -39.17 -0.38 -0.94 16 6 C -0.15 -2.70 5.88 -104.92 -0.62 -3.31 16 7 C 0.50 11.30 7.88 34.54 0.27 11.58 16 8 O -0.51 -12.74 15.08 -19.25 -0.29 -13.03 16 9 O -0.32 -7.65 9.11 -40.55 -0.37 -8.02 16 10 C 0.12 2.94 4.58 37.15 0.17 3.11 16 11 C 0.05 1.16 2.14 -155.66 -0.33 0.83 16 12 C -0.48 -12.86 8.77 -34.44 -0.30 -13.16 16 13 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 14 C 0.07 1.99 5.19 -17.82 -0.09 1.90 16 15 N -0.88 -24.54 10.71 55.43 0.59 -23.95 16 16 Si 0.89 20.69 29.55 -169.99 -5.02 15.67 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.19 -4.30 9.96 -26.69 -0.27 -4.56 16 21 C -0.21 -4.53 9.92 -26.70 -0.26 -4.79 16 22 C 0.15 2.61 7.22 -38.94 -0.28 2.33 16 23 F -0.12 -2.15 14.78 2.25 0.03 -2.11 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.07 0.73 7.64 -51.93 -0.40 0.34 16 27 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 28 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.15 2.42 7.62 -52.49 -0.40 2.02 16 30 H 0.03 0.67 7.94 -51.93 -0.41 0.26 16 31 H 0.11 3.14 6.04 -51.93 -0.31 2.83 16 32 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 35 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -30.48 317.41 -7.85 -38.34 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.45 Total: 1.67 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -3.13 Total: -13.35 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.59 Total: -23.95 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.66 Total: -21.05 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.03 Total: -2.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.48 -7.85 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121540919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.527 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds