Wall clock time and date at job start Tue Mar 31 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38245 * 119.94166 * 2 1 4 4 C 1.38426 * 120.35217 * 179.97438 * 3 2 1 5 5 C 1.37879 * 120.22941 * 0.04907 * 4 3 2 6 6 C 1.39681 * 119.86869 * 359.70021 * 5 4 3 7 7 C 1.47568 * 120.17432 * 180.29859 * 6 5 4 8 8 O 1.21485 * 119.99927 * 174.10725 * 7 6 5 9 9 O 1.34722 * 119.99581 * 354.10926 * 7 6 5 10 10 C 1.45208 * 116.99852 * 184.41602 * 9 7 6 11 11 C 1.52991 * 109.47262 * 184.23269 * 10 9 7 12 12 C 1.50710 * 115.54989 * 306.66694 * 11 10 9 13 13 H 1.07991 * 119.99910 * 144.83793 * 12 11 10 14 14 C 1.37873 * 119.99552 * 324.83975 * 12 11 10 15 15 N 1.31510 * 120.00442 * 350.82520 * 14 12 11 16 16 Si 1.86802 * 119.99804 * 170.82746 * 14 12 11 17 17 H 1.48503 * 109.47129 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47418 * 119.99812 * 16 14 12 19 19 H 1.48495 * 109.47331 * 240.00143 * 16 14 12 20 20 C 1.52999 * 117.50139 * 160.99995 * 11 10 9 21 21 C 1.52998 * 117.50336 * 92.33801 * 11 10 9 22 22 C 1.38279 * 119.93992 * 180.02562 * 2 1 3 23 23 F 1.35103 * 120.11239 * 359.95497 * 22 2 1 24 24 H 1.09001 * 109.47153 * 269.97455 * 1 2 3 25 25 H 1.08993 * 109.46930 * 29.97826 * 1 2 3 26 26 H 1.09002 * 109.46971 * 149.97855 * 1 2 3 27 27 H 1.07997 * 119.82216 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.88890 * 180.02562 * 4 3 2 29 29 H 1.07997 * 120.07218 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.46439 * 304.23059 * 10 9 7 31 31 H 1.08994 * 109.47306 * 64.22559 * 10 9 7 32 32 H 0.97004 * 120.00150 * 185.01948 * 15 14 12 33 33 H 1.08997 * 117.49992 * 359.97438 * 20 11 10 34 34 H 1.09002 * 117.50416 * 145.01889 * 20 11 10 35 35 H 1.09005 * 117.49969 * 214.98480 * 21 11 10 36 36 H 1.09005 * 117.49864 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1979 0.0000 4 6 3.5812 1.2079 0.0005 5 6 4.2839 0.0216 0.0001 6 6 3.5963 -1.1943 0.0054 7 6 4.3416 -2.4679 0.0115 8 8 3.7451 -3.5202 0.1241 9 8 5.6835 -2.4636 -0.1077 10 6 6.3419 -3.7550 -0.1930 11 6 7.8583 -3.5538 -0.2167 12 6 8.3718 -2.6054 -1.2694 13 1 9.2222 -1.9740 -1.0588 14 6 7.7557 -2.5439 -2.5013 15 7 6.8409 -3.4319 -2.8242 16 14 8.2204 -1.1993 -3.7119 17 1 9.2667 -0.3330 -3.1119 18 1 8.7418 -1.8145 -4.9589 19 1 7.0220 -0.3812 -4.0272 20 6 8.7361 -4.7550 0.1405 21 6 8.5968 -3.5893 1.1228 22 6 2.1971 -1.1983 -0.0005 23 9 1.5227 -2.3689 -0.0001 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6532 2.1310 0.0004 28 1 4.1127 2.1480 0.0009 29 1 5.3638 0.0323 0.0001 30 1 6.0690 -4.3596 0.6720 31 1 6.0284 -4.2631 -1.1048 32 1 6.4600 -3.4334 -3.7163 33 1 8.2332 -5.6885 0.3928 34 1 9.6851 -4.8592 -0.3856 35 1 9.4542 -2.9269 1.2425 36 1 8.0022 -3.7556 2.0211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121540919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:12 Heat of formation + Delta-G solvation = -97.404709 kcal Electronic energy + Delta-G solvation = -21554.240227 eV Core-core repulsion = 18111.219133 eV Total energy + Delta-G solvation = -3443.021094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.05211 -41.39341 -39.84396 -38.54118 -36.84900 -34.20208 -34.06496 -31.94187 -28.71492 -27.90114 -27.40884 -25.27530 -23.04033 -22.83493 -21.81028 -21.14160 -18.84035 -18.60323 -18.32907 -17.62873 -17.41982 -16.98099 -16.79015 -16.40839 -15.83160 -15.52406 -15.00987 -14.66482 -14.37561 -14.27058 -14.01204 -13.83125 -13.55214 -13.32210 -12.90330 -12.88996 -12.79115 -12.70376 -12.31238 -12.29446 -12.15983 -11.75039 -11.43956 -11.29394 -11.05980 -10.69929 -10.13393 -10.07638 -9.73369 -8.07252 -6.19726 -0.48558 0.08814 1.40618 1.43371 1.45301 1.55130 1.79485 2.41713 2.55714 3.00837 3.06639 3.47515 3.58708 3.73411 3.87990 4.08338 4.15914 4.22556 4.30415 4.46360 4.57730 4.73162 4.74805 4.78912 4.85740 4.88536 4.93827 5.09152 5.15418 5.19532 5.23221 5.29045 5.35986 5.48955 5.65230 5.78119 5.80339 6.30929 6.73043 6.84919 7.43357 8.92379 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.005922 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.268597 B = 4727.010505 C = 5425.643455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.133 4.133 3 C -0.044 4.044 4 C -0.126 4.126 5 C -0.049 4.049 6 C -0.182 4.182 7 C 0.489 3.511 8 O -0.550 6.550 9 O -0.325 6.325 10 C 0.126 3.874 11 C 0.007 3.993 12 C -0.494 4.494 13 H 0.061 0.939 14 C 0.029 3.971 15 N -0.912 5.912 16 Si 0.954 3.046 17 H -0.260 1.260 18 H -0.283 1.283 19 H -0.280 1.280 20 C -0.186 4.186 21 C -0.185 4.185 22 C 0.124 3.876 23 F -0.137 7.137 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.056 0.944 27 H 0.189 0.811 28 H 0.177 0.823 29 H 0.141 0.859 30 H 0.029 0.971 31 H 0.081 0.919 32 H 0.259 0.741 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.995 12.840 5.489 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.134 4.134 3 C -0.061 4.061 4 C -0.144 4.144 5 C -0.068 4.068 6 C -0.184 4.184 7 C 0.336 3.664 8 O -0.443 6.443 9 O -0.239 6.239 10 C 0.052 3.948 11 C 0.007 3.993 12 C -0.531 4.531 13 H 0.079 0.921 14 C -0.171 4.171 15 N -0.550 5.550 16 Si 0.780 3.220 17 H -0.184 1.184 18 H -0.209 1.209 19 H -0.206 1.206 20 C -0.224 4.224 21 C -0.222 4.222 22 C 0.104 3.896 23 F -0.115 7.115 24 H 0.107 0.893 25 H 0.125 0.875 26 H 0.075 0.925 27 H 0.206 0.794 28 H 0.195 0.805 29 H 0.159 0.841 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.297 12.454 5.402 17.039 hybrid contribution 0.364 -0.846 -0.763 1.196 sum -9.933 11.608 4.640 15.967 Atomic orbital electron populations 1.20821 0.87301 1.04454 1.04088 1.20319 0.98961 0.90427 1.03660 1.21738 0.93929 0.97914 0.92523 1.21663 0.94734 0.98310 0.99665 1.21624 1.01515 0.90587 0.93037 1.19437 0.92086 0.92608 1.14267 1.21620 0.82328 0.89732 0.72692 1.90758 1.70559 1.34814 1.48205 1.86520 1.18847 1.37152 1.81413 1.22588 0.92107 0.80347 0.99712 1.19040 0.87686 0.98072 0.94524 1.20686 1.14235 1.20866 0.97314 0.92092 1.25660 0.94213 0.97369 0.99870 1.69959 1.29238 1.35874 1.19955 0.85557 0.78237 0.79683 0.78560 1.18420 1.20896 1.20624 1.22979 1.02286 0.92671 1.04424 1.22985 1.03616 1.02178 0.93406 1.18023 0.87922 0.82495 1.01166 1.91498 1.79741 1.47034 1.93238 0.89307 0.87464 0.92451 0.79390 0.80531 0.84080 0.95263 0.90108 0.93178 0.90353 0.89599 0.89179 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.83 71.24 0.70 -1.06 16 2 C -0.13 -3.04 5.88 -19.85 -0.12 -3.15 16 3 C -0.04 -0.72 9.69 22.32 0.22 -0.50 16 4 C -0.13 -2.48 10.03 22.23 0.22 -2.26 16 5 C -0.05 -1.51 9.61 22.53 0.22 -1.29 16 6 C -0.18 -6.99 5.88 -20.06 -0.12 -7.11 16 7 C 0.49 23.68 7.88 70.28 0.55 24.23 16 8 O -0.55 -29.34 15.08 19.88 0.30 -29.04 16 9 O -0.32 -16.57 9.11 -56.32 -0.51 -17.08 16 10 C 0.13 6.63 4.58 71.98 0.33 6.96 16 11 C 0.01 0.36 2.14 -52.93 -0.11 0.25 16 12 C -0.49 -26.73 8.77 25.60 0.22 -26.51 16 13 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16 14 C 0.03 1.55 5.19 84.65 0.44 1.99 16 15 N -0.91 -52.61 10.71 21.45 0.23 -52.38 16 16 Si 0.95 42.77 29.55 68.60 2.03 44.79 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.19 -8.28 9.96 30.62 0.30 -7.97 16 21 C -0.18 -7.84 9.92 30.62 0.30 -7.53 16 22 C 0.12 4.22 7.22 22.69 0.16 4.38 16 23 F -0.14 -5.37 14.78 44.97 0.66 -4.70 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.11 1.00 8.08 -2.39 -0.02 0.98 16 26 H 0.06 1.09 7.64 -2.39 -0.02 1.08 16 27 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 28 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.14 4.53 7.62 -2.91 -0.02 4.51 16 30 H 0.03 1.48 7.94 -2.38 -0.02 1.46 16 31 H 0.08 4.78 6.04 -2.39 -0.01 4.77 16 32 H 0.26 14.42 8.32 -92.71 -0.77 13.65 16 33 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.09 3.61 8.14 -2.38 -0.02 3.59 16 36 H 0.08 3.30 8.14 -2.38 -0.02 3.28 16 Total: -1.00 -71.05 317.41 7.13 -63.93 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.09 Total: 14.03 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 3.33 Total: -19.54 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.23 Total: -52.38 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.21 Total: -46.12 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.66 Total: -4.70 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -71.05 7.13 -63.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121540919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.479 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds