Wall clock time and date at job start Tue Mar 31 2020 00:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37977 * 119.92549 * 2 1 4 4 C 1.39555 * 119.85311 * 180.02562 * 3 2 1 5 5 C 1.47847 * 120.14897 * 180.02562 * 4 3 2 6 6 O 1.21552 * 120.00333 * 140.79642 * 5 4 3 7 7 N 1.34780 * 119.99704 * 320.80081 * 5 4 3 8 8 C 1.46497 * 120.00013 * 4.84205 * 7 5 4 9 9 C 1.46497 * 119.99774 * 184.84190 * 7 5 4 10 10 C 1.50707 * 109.47015 * 89.99931 * 9 7 5 11 11 H 1.07997 * 119.99572 * 0.02562 * 10 9 7 12 12 C 1.37877 * 119.99693 * 179.97438 * 10 9 7 13 13 N 1.31506 * 120.00269 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99560 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47502 * 60.00177 * 14 12 10 16 16 H 1.48505 * 109.47214 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47060 * 299.99871 * 14 12 10 18 18 C 1.39599 * 119.70946 * 359.97438 * 4 3 2 19 19 C 1.37933 * 119.85287 * 0.02562 * 18 4 3 20 20 N 1.48017 * 119.92654 * 180.02562 * 19 18 4 21 21 O 1.21801 * 119.99898 * 179.97438 * 20 19 18 22 22 O 1.21804 * 119.99956 * 359.97095 * 20 19 18 23 23 C 1.38335 * 119.92637 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46555 * 269.97796 * 1 2 3 25 25 H 1.09000 * 109.47016 * 29.97993 * 1 2 3 26 26 H 1.08996 * 109.46606 * 149.98058 * 1 2 3 27 27 H 1.07999 * 120.07552 * 0.04113 * 3 2 1 28 28 H 1.08997 * 109.47237 * 85.62159 * 8 7 5 29 29 H 1.09005 * 109.47470 * 205.62387 * 8 7 5 30 30 H 1.09001 * 109.47355 * 325.62180 * 8 7 5 31 31 H 1.09004 * 109.47217 * 209.99936 * 9 7 5 32 32 H 1.08996 * 109.47209 * 330.00230 * 9 7 5 33 33 H 0.97006 * 120.00417 * 179.97438 * 13 12 10 34 34 H 1.08004 * 120.07152 * 180.02562 * 18 4 3 35 35 H 1.07996 * 119.85455 * 0.25525 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5909 1.1941 -0.0005 5 6 4.3351 2.4716 0.0000 6 8 5.3462 2.5858 0.6651 7 7 3.8924 3.5096 -0.7368 8 6 2.6188 3.4086 -1.4538 9 6 4.6847 4.7390 -0.8208 10 6 5.6367 4.6445 -1.9852 11 1 5.6499 3.7576 -2.6013 12 6 6.4901 5.6908 -2.2645 13 7 6.4737 6.7709 -1.5146 14 14 7.6697 5.5740 -3.7083 15 1 6.8983 5.3951 -4.9646 16 1 8.4721 6.8206 -3.7941 17 1 8.5760 4.4137 -3.5144 18 6 4.2813 -0.0193 -0.0005 19 6 3.5810 -1.2077 -0.0005 20 7 4.3113 -2.4951 0.0000 21 8 3.6943 -3.5453 0.0005 22 8 5.5293 -2.5044 0.0000 23 6 2.1972 -1.1989 -0.0005 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3632 -0.8898 -0.5141 27 1 1.6554 2.1311 0.0007 28 1 1.8028 3.6827 -0.7853 29 1 2.6293 4.0831 -2.3100 30 1 2.4768 2.3847 -1.7997 31 1 4.0197 5.5909 -0.9633 32 1 5.2507 4.8702 0.1015 33 1 7.0744 7.5069 -1.7108 34 1 5.3613 -0.0275 -0.0005 35 1 1.6537 -2.1321 -0.0051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121896038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:39 Heat of formation + Delta-G solvation = -7.279328 kcal Electronic energy + Delta-G solvation = -21130.192433 eV Core-core repulsion = 17710.999431 eV Total energy + Delta-G solvation = -3419.193002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = -0.56 seconds Orbital eigenvalues (eV) -42.25086 -40.38693 -38.43805 -36.61514 -35.23715 -33.47336 -32.99133 -31.92808 -28.10660 -27.61105 -26.69015 -26.24731 -24.23915 -22.45995 -21.82559 -19.59807 -18.68094 -18.42417 -17.58962 -16.89099 -16.66099 -16.43643 -15.94046 -15.32401 -14.61162 -14.37612 -14.11797 -13.86460 -13.25567 -13.10058 -12.67676 -12.56688 -12.43826 -12.23615 -12.00897 -11.74782 -11.60538 -11.31170 -11.22044 -11.18557 -11.02406 -10.68534 -10.28027 -9.85234 -9.65983 -9.41001 -9.26818 -8.53741 -7.91933 -6.15451 -4.21550 -0.28625 0.53372 1.19648 1.28553 2.75459 3.25985 3.29145 3.31232 3.37965 3.63815 4.11088 4.26689 4.37390 4.43451 4.54599 4.66774 4.84249 5.13267 5.15717 5.17738 5.20117 5.37280 5.47694 5.55260 5.59414 5.76049 5.82664 5.97112 6.00923 6.33874 6.82373 7.23206 7.31142 7.57972 7.79194 8.06935 8.09088 8.62920 8.83956 9.44294 10.92630 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.004654 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.123646 B = 6014.452544 C = 6884.877691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.049 4.049 4 C -0.105 4.105 5 C 0.546 3.454 6 O -0.523 6.523 7 N -0.589 5.589 8 C 0.073 3.927 9 C 0.244 3.756 10 C -0.535 4.535 11 H 0.058 0.942 12 C 0.064 3.936 13 N -0.892 5.892 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.013 4.013 19 C -0.046 4.046 20 N 0.031 4.969 21 O -0.165 6.165 22 O -0.154 6.154 23 C -0.048 4.048 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.156 0.844 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.266 0.734 34 H 0.162 0.838 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.976 -11.913 1.681 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.067 4.067 4 C -0.110 4.110 5 C 0.331 3.669 6 O -0.401 6.401 7 N -0.320 5.320 8 C -0.070 4.070 9 C 0.126 3.874 10 C -0.573 4.573 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.727 3.273 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.033 4.033 19 C -0.129 4.129 20 N 0.550 4.450 21 O -0.379 6.379 22 O -0.372 6.372 23 C -0.067 4.067 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.173 0.827 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.179 0.821 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.702 -10.991 2.041 18.470 hybrid contribution 0.906 -0.352 -0.893 1.320 sum -13.796 -11.343 1.148 17.898 Atomic orbital electron populations 1.20835 0.88881 1.03915 1.03339 1.19855 0.97323 0.91245 1.00821 1.22120 0.93180 0.99477 0.91969 1.20266 0.93825 0.94387 1.02482 1.17874 0.84766 0.82884 0.81368 1.90813 1.24760 1.82344 1.42135 1.48110 1.21527 1.16451 1.45884 1.22024 0.85528 1.02070 0.97408 1.19428 0.90394 0.78804 0.98787 1.21354 1.20361 1.02464 1.13147 0.92423 1.24920 0.96974 0.95073 0.96887 1.69909 1.38396 1.06085 1.38683 0.86534 0.80935 0.77596 0.82257 1.20195 1.21030 1.20031 1.21070 1.02670 0.88629 0.90898 1.20931 0.92554 0.83546 1.15898 1.43570 1.01309 1.02670 0.97422 1.94505 1.69424 1.20381 1.53638 1.94587 0.95280 1.94187 1.53105 1.21004 0.90830 1.00312 0.94598 0.90243 0.90375 0.90691 0.82684 0.93151 0.89978 0.92134 0.94460 0.93346 0.92464 0.82059 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.09 -0.81 5.87 -104.68 -0.61 -1.42 16 3 C -0.05 -0.53 7.21 -39.19 -0.28 -0.81 16 4 C -0.11 -1.58 5.24 -104.97 -0.55 -2.13 16 5 C 0.55 10.87 7.35 -12.33 -0.09 10.78 16 6 O -0.52 -12.79 16.47 5.32 0.09 -12.70 16 7 N -0.59 -11.61 2.86 -184.08 -0.53 -12.13 16 8 C 0.07 1.01 8.88 59.85 0.53 1.55 16 9 C 0.24 6.06 5.18 -5.19 -0.03 6.03 16 10 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 11 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 14 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.01 -0.19 9.14 -39.19 -0.36 -0.55 16 19 C -0.05 -0.62 6.85 -80.01 -0.55 -1.17 16 20 N 0.03 0.46 4.45 33.93 0.15 0.61 16 21 O -0.16 -2.39 18.44 -29.46 -0.54 -2.93 16 22 O -0.15 -2.54 18.44 -29.46 -0.54 -3.08 16 23 C -0.05 -0.49 9.20 -39.49 -0.36 -0.85 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 26 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 27 H 0.16 1.37 5.30 -52.49 -0.28 1.09 16 28 H 0.05 0.53 6.90 -51.93 -0.36 0.18 16 29 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 30 H 0.06 0.71 5.81 -51.93 -0.30 0.41 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.16 2.61 7.60 -52.48 -0.40 2.21 16 35 H 0.15 1.24 7.60 -52.49 -0.40 0.84 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -32.78 311.68 -7.09 -39.87 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -3.76 Total: -3.62 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.36 Total: -2.06 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.36 Total: -36.51 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.00 Total: -18.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.78 -7.09 -39.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121896038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.591 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.56 seconds