Wall clock time and date at job start Tue Mar 31 2020 00:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37977 * 119.92549 * 2 1 4 4 C 1.39555 * 119.85311 * 180.02562 * 3 2 1 5 5 C 1.47847 * 120.14897 * 180.02562 * 4 3 2 6 6 O 1.21552 * 120.00333 * 140.79642 * 5 4 3 7 7 N 1.34780 * 119.99704 * 320.80081 * 5 4 3 8 8 C 1.46497 * 120.00013 * 4.84205 * 7 5 4 9 9 C 1.46497 * 119.99774 * 184.84190 * 7 5 4 10 10 C 1.50707 * 109.47015 * 89.99931 * 9 7 5 11 11 H 1.07997 * 119.99572 * 0.02562 * 10 9 7 12 12 C 1.37877 * 119.99693 * 179.97438 * 10 9 7 13 13 N 1.31506 * 120.00269 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99560 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47502 * 60.00177 * 14 12 10 16 16 H 1.48505 * 109.47214 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47060 * 299.99871 * 14 12 10 18 18 C 1.39599 * 119.70946 * 359.97438 * 4 3 2 19 19 C 1.37933 * 119.85287 * 0.02562 * 18 4 3 20 20 N 1.48017 * 119.92654 * 180.02562 * 19 18 4 21 21 O 1.21801 * 119.99898 * 179.97438 * 20 19 18 22 22 O 1.21804 * 119.99956 * 359.97095 * 20 19 18 23 23 C 1.38335 * 119.92637 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46555 * 269.97796 * 1 2 3 25 25 H 1.09000 * 109.47016 * 29.97993 * 1 2 3 26 26 H 1.08996 * 109.46606 * 149.98058 * 1 2 3 27 27 H 1.07999 * 120.07552 * 0.04113 * 3 2 1 28 28 H 1.08997 * 109.47237 * 85.62159 * 8 7 5 29 29 H 1.09005 * 109.47470 * 205.62387 * 8 7 5 30 30 H 1.09001 * 109.47355 * 325.62180 * 8 7 5 31 31 H 1.09004 * 109.47217 * 209.99936 * 9 7 5 32 32 H 1.08996 * 109.47209 * 330.00230 * 9 7 5 33 33 H 0.97006 * 120.00417 * 179.97438 * 13 12 10 34 34 H 1.08004 * 120.07152 * 180.02562 * 18 4 3 35 35 H 1.07996 * 119.85455 * 0.25525 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5909 1.1941 -0.0005 5 6 4.3351 2.4716 0.0000 6 8 5.3462 2.5858 0.6651 7 7 3.8924 3.5096 -0.7368 8 6 2.6188 3.4086 -1.4538 9 6 4.6847 4.7390 -0.8208 10 6 5.6367 4.6445 -1.9852 11 1 5.6499 3.7576 -2.6013 12 6 6.4901 5.6908 -2.2645 13 7 6.4737 6.7709 -1.5146 14 14 7.6697 5.5740 -3.7083 15 1 6.8983 5.3951 -4.9646 16 1 8.4721 6.8206 -3.7941 17 1 8.5760 4.4137 -3.5144 18 6 4.2813 -0.0193 -0.0005 19 6 3.5810 -1.2077 -0.0005 20 7 4.3113 -2.4951 0.0000 21 8 3.6943 -3.5453 0.0005 22 8 5.5293 -2.5044 0.0000 23 6 2.1972 -1.1989 -0.0005 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3632 -0.8898 -0.5141 27 1 1.6554 2.1311 0.0007 28 1 1.8028 3.6827 -0.7853 29 1 2.6293 4.0831 -2.3100 30 1 2.4768 2.3847 -1.7997 31 1 4.0197 5.5909 -0.9633 32 1 5.2507 4.8702 0.1015 33 1 7.0744 7.5069 -1.7108 34 1 5.3613 -0.0275 -0.0005 35 1 1.6537 -2.1321 -0.0051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121896038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:37 Heat of formation + Delta-G solvation = -27.806774 kcal Electronic energy + Delta-G solvation = -21131.082570 eV Core-core repulsion = 17710.999431 eV Total energy + Delta-G solvation = -3420.083139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.39024 -41.61901 -39.76100 -37.78566 -36.88294 -34.91599 -34.32688 -33.21328 -29.87816 -28.27053 -27.96350 -27.48616 -25.87542 -23.88199 -22.95224 -20.80709 -19.79007 -19.76292 -18.76825 -18.72958 -17.94120 -17.64519 -17.34678 -16.81760 -16.27321 -15.88611 -14.89606 -14.81829 -14.61029 -14.31787 -14.14947 -13.69070 -13.39822 -13.28584 -13.19261 -12.97322 -12.92313 -12.78009 -12.74775 -12.56689 -12.39284 -12.32382 -12.24658 -11.80213 -11.05093 -10.69656 -10.61790 -10.22255 -9.59109 -8.27885 -6.42696 -1.35526 -0.49594 0.15034 0.20707 1.34420 1.38432 1.44903 1.53371 1.98748 2.30122 2.35808 3.02552 3.16543 3.26145 3.50101 3.61651 3.71149 3.94491 4.22499 4.28514 4.43876 4.53141 4.63450 4.77020 4.84000 4.90272 4.92388 4.97556 5.14297 5.17859 5.20469 5.43992 5.46484 5.72257 5.98096 6.39159 6.49774 6.65356 7.09713 7.29822 8.79203 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.004654 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.123646 B = 6014.452544 C = 6884.877691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.067 4.067 3 C -0.033 4.033 4 C -0.121 4.121 5 C 0.539 3.461 6 O -0.588 6.588 7 N -0.594 5.594 8 C 0.065 3.935 9 C 0.258 3.742 10 C -0.550 4.550 11 H 0.051 0.949 12 C 0.013 3.987 13 N -0.924 5.924 14 Si 0.964 3.036 15 H -0.259 1.259 16 H -0.276 1.276 17 H -0.281 1.281 18 C -0.033 4.033 19 C -0.055 4.055 20 N 0.031 4.969 21 O -0.125 6.125 22 O -0.222 6.222 23 C -0.030 4.030 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.183 0.817 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.002 0.998 33 H 0.269 0.731 34 H 0.130 0.870 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.044 -13.241 0.510 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.068 4.068 3 C -0.051 4.051 4 C -0.125 4.125 5 C 0.327 3.673 6 O -0.470 6.470 7 N -0.323 5.323 8 C -0.076 4.076 9 C 0.137 3.863 10 C -0.589 4.589 11 H 0.070 0.930 12 C -0.186 4.186 13 N -0.563 5.563 14 Si 0.788 3.212 15 H -0.184 1.184 16 H -0.201 1.201 17 H -0.207 1.207 18 C -0.053 4.053 19 C -0.138 4.138 20 N 0.548 4.452 21 O -0.353 6.353 22 O -0.423 6.423 23 C -0.049 4.049 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.200 0.800 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -18.691 -12.271 0.843 22.375 hybrid contribution 1.937 -0.023 -0.488 1.997 sum -16.754 -12.294 0.355 20.784 Atomic orbital electron populations 1.21028 0.85075 1.05931 1.04934 1.20307 0.99415 0.89455 0.97597 1.22395 0.90893 1.01743 0.90068 1.19732 0.95394 0.91295 1.06054 1.18609 0.84273 0.84304 0.80071 1.90763 1.27830 1.83620 1.44757 1.48067 1.23034 1.14892 1.46315 1.22420 0.83651 1.03801 0.97776 1.18898 0.90378 0.81248 0.95792 1.21647 1.21262 1.02237 1.13726 0.93032 1.25781 0.98558 0.94732 0.99569 1.70016 1.39285 1.06766 1.40231 0.85530 0.78712 0.77435 0.79533 1.18354 1.20113 1.20711 1.20812 1.01573 0.89916 0.92977 1.20978 0.93561 0.81893 1.17351 1.43803 1.01198 1.03259 0.96964 1.94447 1.69044 1.20953 1.50887 1.94618 0.96205 1.94547 1.56912 1.21517 0.89027 1.02431 0.91939 0.88595 0.88480 0.88740 0.80045 0.88800 0.90542 0.89479 0.94468 0.97936 0.92215 0.85210 0.79634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.40 10.01 71.24 0.71 0.31 16 2 C -0.07 -0.83 5.87 -19.90 -0.12 -0.94 16 3 C -0.03 -0.59 7.21 22.53 0.16 -0.43 16 4 C -0.12 -3.59 5.24 -20.09 -0.11 -3.69 16 5 C 0.54 22.42 7.35 86.79 0.64 23.06 16 6 O -0.59 -31.17 16.47 -3.88 -0.06 -31.23 16 7 N -0.59 -23.77 2.86 -854.57 -2.44 -26.21 16 8 C 0.06 1.63 8.88 127.77 1.13 2.77 16 9 C 0.26 13.36 5.18 85.64 0.44 13.81 16 10 C -0.55 -31.07 9.39 25.60 0.24 -30.83 16 11 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 12 C 0.01 0.76 5.46 84.66 0.46 1.22 16 13 N -0.92 -54.69 13.29 21.45 0.28 -54.41 16 14 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 15 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 C -0.03 -1.02 9.14 22.53 0.21 -0.81 16 19 C -0.05 -1.40 6.85 36.34 0.25 -1.16 16 20 N 0.03 0.92 4.45 -46.55 -0.21 0.71 16 21 O -0.13 -3.36 18.44 18.89 0.35 -3.01 16 22 O -0.22 -7.80 18.44 18.88 0.35 -7.45 16 23 C -0.03 -0.48 9.20 22.33 0.21 -0.28 16 24 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.10 0.09 8.08 -2.39 -0.02 0.07 16 26 H 0.09 0.09 8.08 -2.39 -0.02 0.07 16 27 H 0.18 2.26 5.30 -2.91 -0.02 2.25 16 28 H 0.09 1.57 6.90 -2.39 -0.02 1.56 16 29 H 0.08 2.05 8.04 -2.38 -0.02 2.03 16 30 H 0.09 1.74 5.81 -2.39 -0.01 1.73 16 31 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 32 H 0.00 0.15 7.36 -2.39 -0.02 0.13 16 33 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 34 H 0.13 4.78 7.60 -2.91 -0.02 4.76 16 35 H 0.19 1.86 7.60 -2.91 -0.02 1.84 16 Total: -1.00 -78.71 311.68 5.65 -73.06 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: 1.12 Total: -0.93 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 4.23 Total: 3.03 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -2.36 Total: -79.91 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: 0.63 Total: -41.69 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -78.71 5.65 -73.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121896038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.257 kcal (2) G-P(sol) polarization free energy of solvation -78.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds