Wall clock time and date at job start Tue Mar 31 2020 00:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46727 * 88.87793 * 3 2 1 5 5 N 1.46905 * 109.46714 * 179.73163 * 4 3 2 6 6 C 1.46898 * 111.00120 * 298.13405 * 5 4 3 7 7 C 1.50701 * 109.46910 * 293.09071 * 6 5 4 8 8 H 1.07993 * 120.00163 * 354.96268 * 7 6 5 9 9 C 1.37882 * 119.99911 * 174.96634 * 7 6 5 10 10 N 1.31516 * 119.99776 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99958 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47256 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46998 * 119.99913 * 11 9 7 14 14 H 1.48498 * 109.47164 * 239.99780 * 11 9 7 15 15 C 1.46904 * 110.99875 * 62.08648 * 5 4 3 16 16 C 1.50696 * 109.47140 * 66.04484 * 15 5 4 17 17 C 1.34842 * 119.48193 * 89.97487 * 16 15 5 18 18 C 1.41732 * 119.01849 * 179.97438 * 17 16 15 19 19 O 1.22168 * 120.92297 * 180.02562 * 18 17 16 20 20 C 1.42224 * 118.14874 * 0.02562 * 18 17 16 21 21 O 1.36086 * 120.55968 * 179.97438 * 20 18 17 22 22 C 1.35118 * 118.88331 * 0.02562 * 20 18 17 23 23 O 1.33775 * 119.48559 * 270.00090 * 16 15 5 24 24 H 1.09001 * 109.47031 * 328.87415 * 3 2 1 25 25 H 1.08998 * 109.46679 * 208.87303 * 3 2 1 26 26 H 1.08997 * 109.47097 * 59.73576 * 4 3 2 27 27 H 1.08994 * 109.47385 * 299.72994 * 4 3 2 28 28 H 1.09004 * 109.47396 * 53.08497 * 6 5 4 29 29 H 1.08996 * 109.47453 * 173.09141 * 6 5 4 30 30 H 0.97001 * 119.99674 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47086 * 306.04421 * 15 5 4 32 32 H 1.09000 * 109.46717 * 186.04853 * 15 5 4 33 33 H 1.08003 * 120.49517 * 359.97438 * 17 16 15 34 34 H 0.96707 * 114.00019 * 90.00216 * 21 20 18 35 35 H 1.07998 * 119.57153 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1180 -0.0274 -1.4422 5 7 4.5870 -0.0202 -1.4424 6 6 5.1076 1.2051 -0.8215 7 6 4.7615 2.3914 -1.6840 8 1 4.2823 2.2423 -2.6403 9 6 5.0569 3.6672 -1.2524 10 7 5.6401 3.8487 -0.0877 11 14 4.6286 5.1376 -2.3219 12 1 3.9840 4.6676 -3.5745 13 1 3.6941 6.0282 -1.5878 14 1 5.8675 5.8858 -2.6539 15 6 5.1193 -1.2157 -0.7749 16 6 4.7667 -2.4396 -1.5802 17 6 5.6120 -2.8696 -2.5387 18 6 5.2708 -4.0221 -3.2898 19 8 6.0112 -4.4423 -4.1661 20 6 4.0425 -4.6757 -2.9951 21 8 3.6663 -5.7859 -3.6863 22 6 3.2550 -4.1752 -2.0179 23 8 3.6196 -3.0822 -1.3334 24 1 2.9718 -0.8789 0.5312 25 1 2.9709 0.9007 0.4962 26 1 2.7504 0.8498 -1.9747 27 1 2.7590 -0.9297 -1.9371 28 1 4.6611 1.3306 0.1650 29 1 6.1906 1.1309 -0.7233 30 1 5.8482 4.7462 0.2158 31 1 4.6855 -1.2990 0.2215 32 1 6.2032 -1.1341 -0.6936 33 1 6.5355 -2.3437 -2.7313 34 1 3.9705 -6.6157 -3.2936 35 1 2.3201 -4.6630 -1.7846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121952892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:11 Heat of formation + Delta-G solvation = -36.348228 kcal Electronic energy + Delta-G solvation = -21206.432095 eV Core-core repulsion = 17785.978570 eV Total energy + Delta-G solvation = -3420.453525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11292 -38.99252 -38.05660 -37.18627 -36.10043 -33.27351 -32.61825 -31.46987 -30.35379 -27.83819 -25.81377 -24.58024 -23.97721 -22.44655 -20.21312 -19.24945 -18.61820 -17.61966 -16.97847 -16.74173 -16.31089 -16.00121 -15.27812 -14.94293 -14.80190 -14.41214 -14.33116 -13.94186 -13.77762 -13.60407 -13.31617 -12.92562 -12.39513 -12.28943 -12.18274 -11.79813 -11.59675 -11.38522 -11.25693 -10.84523 -10.78433 -10.43290 -10.14841 -9.73334 -9.53612 -9.41071 -8.65614 -8.61182 -7.72912 -6.21286 -4.23384 0.76867 0.98216 2.15427 2.98386 3.01924 3.22798 3.30969 3.32179 3.36478 3.73386 4.16061 4.28904 4.34179 4.39675 4.71549 4.80175 5.05546 5.15921 5.26409 5.33363 5.36882 5.51281 5.57889 5.69298 5.79465 6.04630 6.09041 6.40654 6.85197 6.97378 7.01267 7.24677 7.50574 7.63305 7.78440 7.80699 7.86086 8.20119 8.84455 9.42886 10.88903 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.004864 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.076954 B = 5754.936434 C = 6701.647783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.224 3.776 3 C -0.073 4.073 4 C 0.067 3.933 5 N -0.521 5.521 6 C 0.186 3.814 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.090 3.910 16 C 0.149 3.851 17 C -0.285 4.285 18 C 0.383 3.617 19 O -0.488 6.488 20 C -0.083 4.083 21 O -0.468 6.468 22 C 0.080 3.920 23 O -0.204 6.204 24 H 0.101 0.899 25 H 0.125 0.875 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.011 0.989 29 H 0.036 0.964 30 H 0.263 0.737 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.163 0.837 34 H 0.385 0.615 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -14.512 2.591 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.093 4.093 3 C -0.114 4.114 4 C -0.063 4.063 5 N -0.244 5.244 6 C 0.063 3.937 7 C -0.552 4.552 8 H 0.085 0.915 9 C -0.142 4.142 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.209 1.209 15 C -0.038 4.038 16 C 0.101 3.899 17 C -0.306 4.306 18 C 0.272 3.728 19 O -0.374 6.374 20 C -0.131 4.131 21 O -0.276 6.276 22 C 0.013 3.987 23 O -0.105 6.105 24 H 0.119 0.881 25 H 0.142 0.858 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.181 0.819 34 H 0.240 0.760 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.599 -14.066 1.582 14.605 hybrid contribution 0.232 0.423 0.491 0.688 sum -3.367 -13.644 2.073 14.205 Atomic orbital electron populations 1.81160 1.13132 1.09855 1.09377 1.29169 0.95179 0.92369 0.92628 1.20196 0.81876 1.06003 1.03362 1.22135 0.88484 1.03321 0.92335 1.62564 1.05696 1.02035 1.54094 1.19953 0.95876 0.84092 0.93822 1.21108 1.39872 0.89705 1.04492 0.91523 1.24934 0.95045 0.99057 0.95125 1.69932 1.41774 1.22373 1.19335 0.86467 0.78190 0.82394 0.80601 1.19559 1.21062 1.20918 1.21364 1.02402 0.85692 0.94359 1.22806 0.81477 0.91356 0.94293 1.22791 1.05226 1.01856 1.00770 1.18013 0.85753 0.85107 0.83911 1.90801 1.51851 1.65400 1.29304 1.20250 0.98376 0.95720 0.98727 1.84967 1.77064 1.14278 1.51309 1.24329 0.99076 0.85319 0.89934 1.82993 1.36971 1.36361 1.54214 0.88138 0.85756 0.88297 0.91849 0.97124 0.94636 0.92739 0.92030 0.86600 0.81937 0.76011 0.78284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.73 18.54 42.16 0.78 -6.95 16 2 C 0.22 3.28 15.43 -20.76 -0.32 2.96 16 3 C -0.07 -0.93 5.05 -29.52 -0.15 -1.08 16 4 C 0.07 0.99 4.90 -3.82 -0.02 0.98 16 5 N -0.52 -8.37 4.69 -237.52 -1.11 -9.49 16 6 C 0.19 3.78 4.52 -4.98 -0.02 3.76 16 7 C -0.51 -12.34 8.40 -34.44 -0.29 -12.63 16 8 H 0.07 1.63 7.36 -52.49 -0.39 1.24 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -23.64 13.29 55.43 0.74 -22.90 16 11 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.09 1.09 5.06 -4.98 -0.03 1.06 16 16 C 0.15 1.75 5.65 -35.51 -0.20 1.55 16 17 C -0.29 -3.81 9.61 -39.45 -0.38 -4.19 16 18 C 0.38 5.76 6.81 -36.72 -0.25 5.51 16 19 O -0.49 -9.15 17.75 -10.25 -0.18 -9.33 16 20 C -0.08 -0.99 6.73 -39.16 -0.26 -1.26 16 21 O -0.47 -5.21 13.37 -35.03 -0.47 -5.67 16 22 C 0.08 0.72 11.30 29.62 0.33 1.05 16 23 O -0.20 -2.08 8.76 7.86 0.07 -2.01 16 24 H 0.10 1.02 6.34 -51.93 -0.33 0.69 16 25 H 0.12 1.79 6.29 -51.93 -0.33 1.47 16 26 H 0.10 1.69 6.97 -51.93 -0.36 1.32 16 27 H 0.06 0.86 6.52 -51.93 -0.34 0.52 16 28 H 0.01 0.23 6.02 -51.93 -0.31 -0.09 16 29 H 0.04 0.78 7.91 -51.93 -0.41 0.37 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.06 0.63 6.07 -51.93 -0.32 0.31 16 32 H 0.12 1.32 7.84 -51.93 -0.41 0.91 16 33 H 0.16 2.16 8.06 -52.48 -0.42 1.74 16 34 H 0.39 2.34 9.07 45.56 0.41 2.75 16 35 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -31.97 310.98 -4.95 -36.92 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -2.76 Total: 0.57 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.68 Total: -0.86 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.40 Total: -39.33 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.58 Total: -17.02 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.97 -4.95 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121952892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.568 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds