Wall clock time and date at job start Tue Mar 31 2020 00:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46727 * 88.87793 * 3 2 1 5 5 N 1.46905 * 109.46714 * 179.73163 * 4 3 2 6 6 C 1.46898 * 111.00120 * 298.13405 * 5 4 3 7 7 C 1.50701 * 109.46910 * 293.09071 * 6 5 4 8 8 H 1.07993 * 120.00163 * 354.96268 * 7 6 5 9 9 C 1.37882 * 119.99911 * 174.96634 * 7 6 5 10 10 N 1.31516 * 119.99776 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99958 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47256 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46998 * 119.99913 * 11 9 7 14 14 H 1.48498 * 109.47164 * 239.99780 * 11 9 7 15 15 C 1.46904 * 110.99875 * 62.08648 * 5 4 3 16 16 C 1.50696 * 109.47140 * 66.04484 * 15 5 4 17 17 C 1.34842 * 119.48193 * 89.97487 * 16 15 5 18 18 C 1.41732 * 119.01849 * 179.97438 * 17 16 15 19 19 O 1.22168 * 120.92297 * 180.02562 * 18 17 16 20 20 C 1.42224 * 118.14874 * 0.02562 * 18 17 16 21 21 O 1.36086 * 120.55968 * 179.97438 * 20 18 17 22 22 C 1.35118 * 118.88331 * 0.02562 * 20 18 17 23 23 O 1.33775 * 119.48559 * 270.00090 * 16 15 5 24 24 H 1.09001 * 109.47031 * 328.87415 * 3 2 1 25 25 H 1.08998 * 109.46679 * 208.87303 * 3 2 1 26 26 H 1.08997 * 109.47097 * 59.73576 * 4 3 2 27 27 H 1.08994 * 109.47385 * 299.72994 * 4 3 2 28 28 H 1.09004 * 109.47396 * 53.08497 * 6 5 4 29 29 H 1.08996 * 109.47453 * 173.09141 * 6 5 4 30 30 H 0.97001 * 119.99674 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47086 * 306.04421 * 15 5 4 32 32 H 1.09000 * 109.46717 * 186.04853 * 15 5 4 33 33 H 1.08003 * 120.49517 * 359.97438 * 17 16 15 34 34 H 0.96707 * 114.00019 * 90.00216 * 21 20 18 35 35 H 1.07998 * 119.57153 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1180 -0.0274 -1.4422 5 7 4.5870 -0.0202 -1.4424 6 6 5.1076 1.2051 -0.8215 7 6 4.7615 2.3914 -1.6840 8 1 4.2823 2.2423 -2.6403 9 6 5.0569 3.6672 -1.2524 10 7 5.6401 3.8487 -0.0877 11 14 4.6286 5.1376 -2.3219 12 1 3.9840 4.6676 -3.5745 13 1 3.6941 6.0282 -1.5878 14 1 5.8675 5.8858 -2.6539 15 6 5.1193 -1.2157 -0.7749 16 6 4.7667 -2.4396 -1.5802 17 6 5.6120 -2.8696 -2.5387 18 6 5.2708 -4.0221 -3.2898 19 8 6.0112 -4.4423 -4.1661 20 6 4.0425 -4.6757 -2.9951 21 8 3.6663 -5.7859 -3.6863 22 6 3.2550 -4.1752 -2.0179 23 8 3.6196 -3.0822 -1.3334 24 1 2.9718 -0.8789 0.5312 25 1 2.9709 0.9007 0.4962 26 1 2.7504 0.8498 -1.9747 27 1 2.7590 -0.9297 -1.9371 28 1 4.6611 1.3306 0.1650 29 1 6.1906 1.1309 -0.7233 30 1 5.8482 4.7462 0.2158 31 1 4.6855 -1.2990 0.2215 32 1 6.2032 -1.1341 -0.6936 33 1 6.5355 -2.3437 -2.7313 34 1 3.9705 -6.6157 -3.2936 35 1 2.3201 -4.6630 -1.7846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121952892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:10 Heat of formation + Delta-G solvation = -59.915887 kcal Electronic energy + Delta-G solvation = -21207.454065 eV Core-core repulsion = 17785.978570 eV Total energy + Delta-G solvation = -3421.475495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.06086 -40.02653 -39.27300 -38.12762 -37.33677 -34.83168 -33.96316 -32.43852 -31.59794 -29.27164 -27.08115 -25.60973 -25.30362 -23.69250 -21.51949 -20.10789 -19.57246 -18.83618 -18.26152 -17.79970 -17.63698 -17.02900 -16.65268 -16.21089 -15.96646 -15.62828 -15.34759 -15.22986 -14.99388 -14.72461 -14.46847 -14.13344 -13.84320 -13.57186 -13.38541 -13.05986 -12.94541 -12.77753 -12.58730 -12.46365 -12.25759 -11.93649 -11.55693 -11.26984 -10.65102 -10.55920 -10.50029 -9.66661 -9.02988 -8.13226 -6.17896 -0.15770 0.02056 1.25480 1.43325 1.49051 1.57260 1.81335 1.85850 2.29171 2.46626 2.86934 3.02037 3.22765 3.33181 3.50784 3.60443 3.93546 4.08688 4.17208 4.28096 4.48472 4.52235 4.57457 4.70932 4.82821 4.88604 5.10158 5.18911 5.40403 5.41564 5.74148 6.05572 6.12427 6.24670 6.50858 6.56235 6.65480 6.83934 6.97428 7.50864 8.96148 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.004864 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.076954 B = 5754.936434 C = 6701.647783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.245 3.755 3 C -0.061 4.061 4 C 0.070 3.930 5 N -0.534 5.534 6 C 0.199 3.801 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.017 3.983 10 N -0.924 5.924 11 Si 0.943 3.057 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.088 3.912 16 C 0.172 3.828 17 C -0.302 4.302 18 C 0.368 3.632 19 O -0.548 6.548 20 C -0.107 4.107 21 O -0.480 6.480 22 C 0.117 3.883 23 O -0.192 6.192 24 H 0.140 0.860 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.011 0.989 29 H 0.019 0.981 30 H 0.262 0.738 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.154 0.846 34 H 0.405 0.595 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -15.623 3.748 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.071 4.071 3 C -0.102 4.102 4 C -0.060 4.060 5 N -0.257 5.257 6 C 0.075 3.925 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.182 4.182 10 N -0.564 5.564 11 Si 0.770 3.230 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.039 4.039 16 C 0.123 3.877 17 C -0.323 4.323 18 C 0.262 3.738 19 O -0.440 6.440 20 C -0.155 4.155 21 O -0.291 6.291 22 C 0.051 3.949 23 O -0.092 6.092 24 H 0.157 0.843 25 H 0.130 0.870 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.172 0.828 34 H 0.262 0.738 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -5.032 -15.191 2.755 16.238 hybrid contribution 0.625 0.713 0.157 0.961 sum -4.407 -14.478 2.912 15.412 Atomic orbital electron populations 1.81193 1.14354 1.11267 1.10615 1.29344 0.95227 0.91133 0.91441 1.20174 0.80605 1.07192 1.02263 1.22052 0.87622 1.02945 0.93415 1.62308 1.06540 1.01958 1.54872 1.19594 0.94879 0.84844 0.93228 1.21450 1.38449 0.91128 1.04388 0.92481 1.25515 0.95505 1.01181 0.96025 1.69999 1.43310 1.22604 1.20526 0.85726 0.77701 0.80175 0.79360 1.19539 1.21041 1.21119 1.21438 1.03134 0.83889 0.95396 1.22559 0.81396 0.90862 0.92930 1.22733 1.05798 1.02086 1.01673 1.18593 0.86636 0.85427 0.83152 1.90768 1.53908 1.67223 1.32059 1.20053 0.98002 0.96791 1.00608 1.84926 1.76905 1.15091 1.52195 1.25029 0.99146 0.83361 0.87364 1.83040 1.35796 1.36438 1.53945 0.84282 0.86988 0.91090 0.90048 0.97089 0.96279 0.92899 0.88825 0.85923 0.82800 0.73810 0.73332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.73 18.54 20.01 0.37 -15.36 16 2 C 0.25 6.52 15.43 89.44 1.38 7.91 16 3 C -0.06 -1.37 5.05 28.79 0.15 -1.22 16 4 C 0.07 1.88 4.90 86.30 0.42 2.30 16 5 N -0.53 -16.12 4.69 -905.38 -4.24 -20.36 16 6 C 0.20 7.91 4.52 85.56 0.39 8.29 16 7 C -0.52 -24.64 8.40 25.60 0.21 -24.42 16 8 H 0.06 2.79 7.36 -2.91 -0.02 2.77 16 9 C 0.02 0.84 5.46 84.66 0.46 1.30 16 10 N -0.92 -48.73 13.29 21.45 0.28 -48.45 16 11 Si 0.94 41.14 29.54 68.60 2.03 43.16 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 15 C 0.09 1.87 5.06 85.55 0.43 2.30 16 16 C 0.17 3.52 5.65 24.90 0.14 3.66 16 17 C -0.30 -7.83 9.61 22.35 0.21 -7.62 16 18 C 0.37 11.02 6.81 24.12 0.16 11.18 16 19 O -0.55 -21.47 17.75 8.49 0.15 -21.31 16 20 C -0.11 -2.33 6.73 22.54 0.15 -2.17 16 21 O -0.48 -9.81 13.37 -80.18 -1.07 -10.89 16 22 C 0.12 1.57 11.30 67.10 0.76 2.33 16 23 O -0.19 -3.01 8.76 5.22 0.05 -2.96 16 24 H 0.14 2.07 6.34 -2.39 -0.02 2.05 16 25 H 0.11 2.95 6.29 -2.39 -0.02 2.94 16 26 H 0.07 2.34 6.97 -2.39 -0.02 2.32 16 27 H 0.08 1.91 6.52 -2.39 -0.02 1.89 16 28 H 0.01 0.45 6.02 -2.38 -0.01 0.44 16 29 H 0.02 0.83 7.91 -2.39 -0.02 0.81 16 30 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 31 H 0.09 1.44 6.07 -2.39 -0.01 1.43 16 32 H 0.12 2.51 7.84 -2.39 -0.02 2.49 16 33 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.40 4.19 9.07 -74.05 -0.67 3.52 16 35 H 0.25 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -71.26 310.98 2.92 -68.33 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 0.48 Total: 3.98 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 4.88 Total: 3.85 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -3.59 Total: -84.17 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.88 Total: -35.16 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -71.26 2.92 -68.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121952892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.419 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds