Wall clock time and date at job start Tue Mar 31 2020 01:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34238 * 116.99564 * 2 1 4 4 O 1.20820 * 119.99799 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99819 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46912 * 180.02562 * 5 3 2 7 7 C 1.36788 * 120.00052 * 269.99496 * 6 5 3 8 8 H 1.08003 * 119.99481 * 133.65059 * 7 6 5 9 9 C 1.39101 * 120.00033 * 313.65334 * 7 6 5 10 10 N 1.31326 * 119.99958 * 172.92595 * 9 7 6 11 11 Si 1.86802 * 120.00231 * 352.93216 * 9 7 6 12 12 H 1.48500 * 109.47434 * 94.96131 * 11 9 7 13 13 H 1.48498 * 109.47113 * 214.96349 * 11 9 7 14 14 H 1.48505 * 109.46734 * 334.96383 * 11 9 7 15 15 C 1.34779 * 120.00236 * 89.99855 * 6 5 3 16 16 O 1.21565 * 119.99652 * 4.73850 * 15 6 5 17 17 C 1.48004 * 120.00261 * 184.73841 * 15 6 5 18 18 C 1.39407 * 119.73510 * 174.17053 * 17 15 6 19 19 C 1.38536 * 119.05582 * 180.02562 * 18 17 15 20 20 C 1.38671 * 118.50048 * 359.97438 * 19 18 17 21 21 C 1.50692 * 120.31540 * 180.02562 * 20 19 18 22 22 C 1.38547 * 119.36413 * 0.02562 * 20 19 18 23 23 N 1.31529 * 120.91323 * 0.02562 * 22 20 19 24 24 H 1.08994 * 109.47460 * 299.99662 * 1 2 3 25 25 H 1.08996 * 109.47503 * 60.00240 * 1 2 3 26 26 H 1.09004 * 109.46343 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47718 * 59.99699 * 5 3 2 28 28 H 1.09003 * 109.47318 * 299.99956 * 5 3 2 29 29 H 0.97002 * 119.99756 * 185.00724 * 10 9 7 30 30 H 1.08001 * 120.46808 * 0.27230 * 18 17 15 31 31 H 1.08010 * 120.75115 * 180.02562 * 19 18 17 32 32 H 1.09001 * 109.47489 * 90.00108 * 21 20 19 33 33 H 1.09005 * 109.46889 * 210.00477 * 21 20 19 34 34 H 1.09003 * 109.47682 * 329.99444 * 21 20 19 35 35 H 1.07997 * 119.54167 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2751 -0.0006 6 7 3.9815 2.6799 0.0002 7 6 4.1749 3.3366 -1.1841 8 1 3.7609 4.3236 -1.3281 9 6 4.9049 2.7330 -2.2029 10 7 4.9742 3.2998 -3.3855 11 14 5.7864 1.1163 -1.8888 12 1 4.9221 -0.0110 -2.3215 13 1 7.0574 1.0884 -2.6562 14 1 6.0805 0.9864 -0.4390 15 6 4.1730 3.3255 1.1677 16 8 4.0854 2.7202 2.2183 17 6 4.4899 4.7712 1.1707 18 6 4.5666 5.4597 2.3804 19 6 4.8637 6.8128 2.3668 20 6 5.0745 7.4317 1.1439 21 6 5.4008 8.9015 1.0815 22 6 4.9824 6.6857 -0.0199 23 7 4.6978 5.4022 0.0210 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.9557 0.7811 -0.8907 28 1 3.9564 0.7808 0.8892 29 1 5.4216 2.8446 -4.1160 30 1 4.4008 4.9447 3.3151 31 1 4.9304 7.3729 3.2879 32 1 6.4814 9.0362 1.1280 33 1 5.0224 9.3183 0.1481 34 1 4.9343 9.4134 1.9232 35 1 5.1465 7.1646 -0.9738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126728987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:28 Heat of formation + Delta-G solvation = -71.471200 kcal Electronic energy + Delta-G solvation = -21869.478262 eV Core-core repulsion = 18447.501692 eV Total energy + Delta-G solvation = -3421.976571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.92277 -41.24192 -39.89130 -37.64689 -36.83522 -34.50531 -33.94367 -32.75109 -30.82587 -28.68446 -27.72969 -26.72072 -24.57180 -23.63677 -22.49807 -21.23403 -19.87132 -19.04855 -18.51431 -17.60550 -17.52423 -17.13711 -16.74119 -16.32758 -16.04075 -15.96129 -15.23451 -14.89937 -14.77506 -14.55330 -14.36826 -13.99483 -13.90472 -13.55445 -13.34153 -13.18588 -13.04493 -12.95739 -12.54787 -12.27999 -11.95311 -11.85275 -11.66511 -11.28238 -10.97281 -10.67765 -10.18134 -9.80284 -9.51454 -8.30800 -6.08438 -0.20973 0.46293 1.05099 1.17844 1.30258 1.37806 1.43587 1.94862 2.17977 2.39675 2.95715 3.11141 3.52799 3.77213 3.86312 3.94640 3.96955 4.09555 4.11197 4.15833 4.28616 4.29407 4.47618 4.63068 4.75879 4.90775 4.96571 5.15471 5.20450 5.24108 5.32448 5.36600 5.81956 6.07701 6.48342 6.65682 6.85892 7.17121 7.32096 7.56056 8.77319 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.007004 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.064950 B = 3996.998194 C = 4910.730667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.454 3.546 4 O -0.523 6.523 5 C 0.097 3.903 6 N -0.444 5.444 7 C -0.300 4.300 8 H 0.107 0.893 9 C 0.020 3.980 10 N -0.903 5.903 11 Si 0.908 3.092 12 H -0.246 1.246 13 H -0.281 1.281 14 H -0.258 1.258 15 C 0.530 3.470 16 O -0.604 6.604 17 C 0.053 3.947 18 C -0.122 4.122 19 C -0.086 4.086 20 C -0.112 4.112 21 C -0.104 4.104 22 C 0.064 3.936 23 N -0.433 5.433 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.143 0.857 27 H 0.108 0.892 28 H 0.130 0.870 29 H 0.277 0.723 30 H 0.144 0.856 31 H 0.179 0.821 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 3.098 7.806 8.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.296 3.704 4 O -0.411 6.411 5 C -0.027 4.027 6 N -0.163 5.163 7 C -0.429 4.429 8 H 0.125 0.875 9 C -0.182 4.182 10 N -0.541 5.541 11 Si 0.733 3.267 12 H -0.171 1.171 13 H -0.208 1.208 14 H -0.182 1.182 15 C 0.321 3.679 16 O -0.489 6.489 17 C -0.084 4.084 18 C -0.143 4.143 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.161 4.161 22 C -0.096 4.096 23 N -0.143 5.143 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.161 0.839 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.162 0.838 31 H 0.196 0.804 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.359 2.570 7.354 7.908 hybrid contribution 0.118 -0.389 0.158 0.437 sum -1.242 2.181 7.513 7.921 Atomic orbital electron populations 1.23592 0.74651 1.06017 1.02304 1.86490 1.25306 1.32027 1.84022 1.24456 0.92573 0.81746 0.71616 1.90608 1.67213 1.37590 1.45675 1.21537 0.87789 0.87647 1.05728 1.43384 1.57346 1.08932 1.06604 1.19448 1.31148 1.03058 0.89211 0.87537 1.25986 0.96055 1.01024 0.95178 1.69649 1.43329 1.39480 1.01644 0.86395 0.79663 0.81058 0.79579 1.17109 1.20754 1.18227 1.18601 0.78798 0.87388 0.83086 1.90582 1.57993 1.68330 1.32035 1.20934 1.02877 0.93923 0.90711 1.22218 0.98149 0.95995 0.97977 1.21804 0.96951 0.92849 0.99517 1.21595 0.97100 0.99530 0.93250 1.20826 1.03153 0.87652 1.04479 1.23385 0.96966 0.89596 0.99637 1.68611 1.07357 1.10539 1.27793 0.92171 0.92401 0.83927 0.87518 0.85208 0.91326 0.83782 0.80352 0.89294 0.90338 0.89152 0.81954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -13.05 10.57 -51.50 -0.54 -13.59 16 3 C 0.45 20.31 8.02 71.23 0.57 20.88 16 4 O -0.52 -26.64 16.18 21.98 0.36 -26.29 16 5 C 0.10 4.46 4.51 85.63 0.39 4.84 16 6 N -0.44 -23.22 1.59 -642.75 -1.02 -24.24 16 7 C -0.30 -16.91 8.06 84.13 0.68 -16.23 16 8 H 0.11 6.63 6.08 -2.91 -0.02 6.61 16 9 C 0.02 1.10 5.46 84.98 0.46 1.56 16 10 N -0.90 -51.99 13.95 21.69 0.30 -51.68 16 11 Si 0.91 41.43 24.67 68.60 1.69 43.12 16 12 H -0.25 -10.16 6.93 99.48 0.69 -9.47 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.26 -11.63 6.77 99.48 0.67 -10.96 16 15 C 0.53 27.32 7.61 86.83 0.66 27.98 16 16 O -0.60 -31.30 15.89 -3.92 -0.06 -31.36 16 17 C 0.05 2.43 6.66 41.87 0.28 2.71 16 18 C -0.12 -4.44 9.63 22.62 0.22 -4.22 16 19 C -0.09 -2.32 9.85 22.44 0.22 -2.10 16 20 C -0.11 -3.05 5.91 -19.69 -0.12 -3.16 16 21 C -0.10 -1.73 10.03 71.23 0.71 -1.01 16 22 C 0.06 2.33 10.86 84.81 0.92 3.25 16 23 N -0.43 -20.25 6.33 -184.95 -1.17 -21.42 16 24 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 25 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 26 H 0.14 2.46 8.14 -2.38 -0.02 2.44 16 27 H 0.11 4.74 3.33 -2.39 -0.01 4.73 16 28 H 0.13 5.48 7.36 -2.39 -0.02 5.46 16 29 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.14 4.94 7.65 -2.91 -0.02 4.92 16 31 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.22 8.09 -2.38 -0.02 1.20 16 34 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 35 H 0.16 5.30 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -75.04 304.73 6.81 -68.22 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.07 Total: 20.81 kcal Atomic # 6 Polarization: 30.24 SS G_CDS: 6.19 Total: 36.44 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -1.89 Total: -97.34 kcal Atomic # 8 Polarization: -70.99 SS G_CDS: -0.25 Total: -71.24 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.69 Total: 43.12 kcal Total: -75.04 6.81 -68.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126728987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.249 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds