Wall clock time and date at job start Tue Mar 31 2020 00:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00030 * 3 2 1 6 6 H 1.48504 * 109.47102 * 60.00379 * 3 2 1 7 7 C 1.38948 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99772 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99962 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47300 * 180.02562 * 12 10 9 14 14 N 1.46506 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 12 16 16 O 1.21785 * 120.00006 * 0.02562 * 15 14 13 17 17 C 1.41545 * 119.99980 * 180.02562 * 15 14 13 18 18 C 1.35629 * 120.00169 * 180.02562 * 17 15 14 19 19 C 1.41605 * 120.00202 * 180.02562 * 18 17 15 20 20 C 1.37947 * 126.10186 * 179.97438 * 19 18 17 21 21 C 1.40312 * 106.52921 * 179.97438 * 20 19 18 22 22 C 1.35160 * 107.20559 * 359.97438 * 21 20 19 23 23 O 1.34027 * 109.02985 * 359.77235 * 22 21 20 24 24 H 0.97005 * 120.00019 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99990 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.47043 * 60.00268 * 12 10 9 27 27 H 1.09004 * 109.47476 * 300.00342 * 12 10 9 28 28 H 1.09004 * 109.46930 * 60.00105 * 13 12 10 29 29 H 1.09000 * 109.47312 * 300.00049 * 13 12 10 30 30 H 0.96999 * 120.00080 * 0.02562 * 14 13 12 31 31 H 1.07999 * 119.99979 * 0.02562 * 17 15 14 32 32 H 1.08004 * 119.99389 * 0.02562 * 18 17 15 33 33 H 1.07998 * 126.74141 * 359.97438 * 20 19 18 34 34 H 1.07998 * 126.40149 * 179.97438 * 21 20 19 35 35 H 1.07997 * 125.48752 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 6 2.2379 -6.0259 -0.0027 14 7 1.5054 -7.2946 -0.0026 15 6 2.1792 -8.4618 -0.0036 16 8 3.3971 -8.4618 -0.0040 17 6 1.4715 -9.6876 -0.0041 18 6 2.1496 -10.8622 -0.0045 19 6 1.4416 -12.0886 -0.0055 20 6 2.0004 -13.3498 -0.0065 21 6 0.9323 -14.2597 -0.0068 22 6 -0.2093 -13.5361 -0.0053 23 8 0.0999 -12.2320 0.0008 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6167 -4.9201 -0.8920 27 1 0.6173 -4.9213 0.8880 28 1 2.8646 -5.9685 0.8874 29 1 2.8646 -5.9678 -0.8926 30 1 0.5354 -7.2946 -0.0027 31 1 0.3915 -9.6876 -0.0041 32 1 3.2296 -10.8622 -0.0040 33 1 3.0534 -13.5898 -0.0071 34 1 1.0081 -15.3370 -0.0079 35 1 -1.2096 -13.9432 -0.0054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126761892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:43 Heat of formation + Delta-G solvation = -48.314973 kcal Electronic energy + Delta-G solvation = -19505.576276 eV Core-core repulsion = 16084.603834 eV Total energy + Delta-G solvation = -3420.972442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.90853 -39.80879 -38.25917 -35.16679 -34.30274 -33.93715 -33.41115 -31.36183 -30.64293 -29.04252 -25.65190 -24.39706 -22.59111 -22.19505 -20.92221 -19.90958 -19.02557 -17.94728 -17.84777 -16.99713 -16.45115 -16.32127 -15.51582 -15.42902 -14.89293 -14.46808 -14.30082 -14.01008 -13.74820 -13.38903 -13.17525 -12.78824 -12.66245 -12.46233 -12.32780 -11.60646 -11.35918 -11.22566 -11.01184 -10.86902 -10.35617 -10.28607 -10.25011 -9.98637 -9.56370 -8.94587 -8.47186 -8.28525 -8.01047 -6.45282 -3.86146 0.16820 1.78600 2.38260 2.57455 3.14812 3.25540 3.29851 3.35584 3.40114 3.85300 4.16722 4.38643 4.53789 4.59124 4.85289 4.99204 5.05803 5.20042 5.27761 5.32320 5.38262 5.58946 5.65688 5.73350 5.81350 5.93115 6.09037 6.30226 6.31930 6.36268 6.61995 6.67833 7.52869 7.57063 8.02069 8.27568 8.55792 9.13820 9.49473 10.00198 10.72307 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.062883 B = 0.002222 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.161364 B =12599.566459 C =13024.279603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.105 0.895 9 N -0.560 5.560 10 C 0.442 3.558 11 O -0.593 6.593 12 C -0.143 4.143 13 C 0.138 3.862 14 N -0.724 5.724 15 C 0.543 3.457 16 O -0.545 6.545 17 C -0.197 4.197 18 C 0.002 3.998 19 C -0.006 4.006 20 C -0.167 4.167 21 C -0.219 4.219 22 C -0.022 4.022 23 O -0.166 6.166 24 H 0.271 0.729 25 H 0.393 0.607 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.399 0.601 31 H 0.130 0.870 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 -25.344 -0.012 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.195 5.195 10 C 0.228 3.772 11 O -0.479 6.479 12 C -0.184 4.184 13 C 0.015 3.985 14 N -0.375 5.375 15 C 0.333 3.667 16 O -0.425 6.425 17 C -0.218 4.218 18 C -0.018 4.018 19 C -0.055 4.055 20 C -0.186 4.186 21 C -0.238 4.238 22 C -0.092 4.092 23 O -0.061 6.061 24 H 0.081 0.919 25 H 0.227 0.773 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.233 0.767 31 H 0.148 0.852 32 H 0.179 0.821 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.829 -24.869 -0.009 25.162 hybrid contribution -0.883 0.656 0.001 1.100 sum -4.712 -24.213 -0.008 24.667 Atomic orbital electron populations 1.69619 1.05963 1.28151 1.50436 1.25287 0.95662 0.99825 0.97184 0.85783 0.79758 0.80991 0.77722 1.19152 1.20718 1.20714 1.19793 0.93496 0.82220 1.47542 0.87751 1.41885 1.09251 1.04635 1.63772 1.19626 0.88170 0.84706 0.84740 1.90557 1.13862 1.87294 1.56139 1.21646 0.99042 0.94319 1.03388 1.21065 0.93800 0.79724 1.03933 1.46041 1.10326 1.06397 1.74696 1.16959 0.87714 0.84419 0.77641 1.90865 1.13565 1.88121 1.49991 1.22152 1.01038 0.92861 1.05778 1.20679 0.99963 0.87841 0.93332 1.19928 0.80328 0.95515 1.09722 1.22387 1.00822 0.91039 1.04345 1.21801 0.92111 1.01120 1.08730 1.24332 1.00704 0.79879 1.04246 1.84110 1.23849 1.27706 1.70449 0.91863 0.77342 0.89832 0.89837 0.90548 0.90542 0.76685 0.85187 0.82128 0.82566 0.82938 0.77713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.06 5.29 -10.97 -0.06 -14.12 16 10 C 0.44 10.33 7.78 -10.99 -0.09 10.24 16 11 O -0.59 -16.21 15.56 5.55 0.09 -16.12 16 12 C -0.14 -2.36 5.81 -27.88 -0.16 -2.53 16 13 C 0.14 2.31 4.96 -4.04 -0.02 2.29 16 14 N -0.72 -9.44 5.55 -63.24 -0.35 -9.79 16 15 C 0.54 7.69 7.56 -15.00 -0.11 7.58 16 16 O -0.55 -9.93 16.11 5.11 0.08 -9.85 16 17 C -0.20 -2.13 9.41 -39.25 -0.37 -2.50 16 18 C 0.00 0.02 9.39 -39.23 -0.37 -0.35 16 19 C -0.01 -0.05 6.84 -38.40 -0.26 -0.32 16 20 C -0.17 -1.32 10.90 -38.91 -0.42 -1.74 16 21 C -0.22 -1.43 10.87 -39.90 -0.43 -1.87 16 22 C -0.02 -0.14 12.06 29.64 0.36 0.21 16 23 O -0.17 -1.50 10.18 4.68 0.05 -1.45 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 29 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 30 H 0.40 3.81 8.43 -40.82 -0.34 3.47 16 31 H 0.13 1.12 7.72 -52.49 -0.41 0.72 16 32 H 0.16 1.60 7.46 -52.48 -0.39 1.21 16 33 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -34.69 320.99 -5.71 -40.40 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -3.93 Total: 10.71 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.12 Total: 2.99 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.32 Total: -47.51 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: 0.22 Total: -27.42 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.69 -5.71 -40.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126761892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.918 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds