Wall clock time and date at job start Tue Mar 31 2020 00:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00030 * 3 2 1 6 6 H 1.48504 * 109.47102 * 60.00379 * 3 2 1 7 7 C 1.38948 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99772 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99962 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47300 * 180.02562 * 12 10 9 14 14 N 1.46506 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 12 16 16 O 1.21785 * 120.00006 * 0.02562 * 15 14 13 17 17 C 1.41545 * 119.99980 * 180.02562 * 15 14 13 18 18 C 1.35629 * 120.00169 * 180.02562 * 17 15 14 19 19 C 1.41605 * 120.00202 * 180.02562 * 18 17 15 20 20 C 1.37947 * 126.10186 * 179.97438 * 19 18 17 21 21 C 1.40312 * 106.52921 * 179.97438 * 20 19 18 22 22 C 1.35160 * 107.20559 * 359.97438 * 21 20 19 23 23 O 1.34027 * 109.02985 * 359.77235 * 22 21 20 24 24 H 0.97005 * 120.00019 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99990 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.47043 * 60.00268 * 12 10 9 27 27 H 1.09004 * 109.47476 * 300.00342 * 12 10 9 28 28 H 1.09004 * 109.46930 * 60.00105 * 13 12 10 29 29 H 1.09000 * 109.47312 * 300.00049 * 13 12 10 30 30 H 0.96999 * 120.00080 * 0.02562 * 14 13 12 31 31 H 1.07999 * 119.99979 * 0.02562 * 17 15 14 32 32 H 1.08004 * 119.99389 * 0.02562 * 18 17 15 33 33 H 1.07998 * 126.74141 * 359.97438 * 20 19 18 34 34 H 1.07998 * 126.40149 * 179.97438 * 21 20 19 35 35 H 1.07997 * 125.48752 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 6 2.2379 -6.0259 -0.0027 14 7 1.5054 -7.2946 -0.0026 15 6 2.1792 -8.4618 -0.0036 16 8 3.3971 -8.4618 -0.0040 17 6 1.4715 -9.6876 -0.0041 18 6 2.1496 -10.8622 -0.0045 19 6 1.4416 -12.0886 -0.0055 20 6 2.0004 -13.3498 -0.0065 21 6 0.9323 -14.2597 -0.0068 22 6 -0.2093 -13.5361 -0.0053 23 8 0.0999 -12.2320 0.0008 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6167 -4.9201 -0.8920 27 1 0.6173 -4.9213 0.8880 28 1 2.8646 -5.9685 0.8874 29 1 2.8646 -5.9678 -0.8926 30 1 0.5354 -7.2946 -0.0027 31 1 0.3915 -9.6876 -0.0041 32 1 3.2296 -10.8622 -0.0040 33 1 3.0534 -13.5898 -0.0071 34 1 1.0081 -15.3370 -0.0079 35 1 -1.2096 -13.9432 -0.0054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126761892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:42 Heat of formation + Delta-G solvation = -74.369802 kcal Electronic energy + Delta-G solvation = -19506.706098 eV Core-core repulsion = 16084.603834 eV Total energy + Delta-G solvation = -3422.102264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.48483 -40.98937 -40.11506 -36.50957 -35.87703 -35.16845 -33.98631 -33.34697 -32.00429 -29.84514 -27.34085 -25.64312 -23.80946 -22.81589 -21.85161 -21.15777 -20.45534 -19.83783 -18.67365 -17.89364 -17.85378 -17.07058 -16.86386 -16.77508 -16.38212 -15.83562 -15.74090 -15.61812 -14.99145 -14.33480 -14.27272 -13.91248 -13.68049 -13.55959 -13.49277 -13.08320 -12.96963 -12.82230 -12.41728 -12.40656 -12.11876 -11.70023 -11.55160 -11.19179 -10.84076 -10.43595 -10.18024 -10.03754 -8.94552 -8.49436 -5.98221 -0.58853 1.16894 1.35533 1.41707 1.55734 1.71904 2.00665 2.02642 2.13709 2.33731 2.42317 3.18039 3.30970 3.71328 3.86160 3.99312 4.08209 4.15703 4.16848 4.28736 4.36346 4.67587 4.69246 4.88707 4.92663 4.96965 5.05242 5.11065 5.23098 5.38499 5.41115 5.54866 5.96771 6.09533 6.54543 6.56895 7.09328 7.22743 7.51766 8.07503 8.67863 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.062883 B = 0.002222 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.161364 B =12599.566459 C =13024.279603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.567 5.567 10 C 0.437 3.563 11 O -0.639 6.639 12 C -0.123 4.123 13 C 0.150 3.850 14 N -0.709 5.709 15 C 0.543 3.457 16 O -0.597 6.597 17 C -0.217 4.217 18 C 0.022 3.978 19 C -0.043 4.043 20 C -0.159 4.159 21 C -0.232 4.232 22 C -0.009 4.009 23 O -0.180 6.180 24 H 0.279 0.721 25 H 0.400 0.600 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.420 0.580 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.178 0.822 35 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 -27.004 -0.013 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.203 5.203 10 C 0.225 3.775 11 O -0.527 6.527 12 C -0.164 4.164 13 C 0.025 3.975 14 N -0.361 5.361 15 C 0.335 3.665 16 O -0.481 6.481 17 C -0.238 4.238 18 C 0.002 3.998 19 C -0.092 4.092 20 C -0.178 4.178 21 C -0.251 4.251 22 C -0.078 4.078 23 O -0.075 6.075 24 H 0.088 0.912 25 H 0.234 0.766 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.258 0.742 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.188 0.812 34 H 0.195 0.805 35 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.082 -26.538 -0.010 27.226 hybrid contribution -0.231 0.932 0.001 0.961 sum -6.313 -25.606 -0.008 26.373 Atomic orbital electron populations 1.69665 1.06725 1.29360 1.49966 1.26040 0.96593 1.02397 0.96110 0.84873 0.77969 0.77083 0.78422 1.19999 1.19475 1.19464 1.19720 0.92750 0.84128 1.50110 0.90444 1.41926 1.09472 1.04601 1.64346 1.20764 0.87999 0.86363 0.82423 1.90531 1.16347 1.88269 1.57587 1.21518 0.98487 0.89773 1.06577 1.20662 0.93758 0.81601 1.01452 1.45762 1.11206 1.04797 1.74300 1.17475 0.87200 0.85481 0.76327 1.90839 1.15846 1.88760 1.52643 1.21964 1.01851 0.91145 1.08803 1.20719 0.99876 0.88382 0.90833 1.19859 0.80882 0.95522 1.12939 1.22794 1.02101 0.90934 1.01985 1.22190 0.91639 1.02346 1.08919 1.25239 1.02458 0.78872 1.01183 1.84102 1.23528 1.29170 1.70748 0.91169 0.76579 0.86463 0.86470 0.93234 0.93226 0.74229 0.82836 0.82775 0.81239 0.80502 0.73907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -28.81 5.29 -306.99 -1.62 -30.43 16 10 C 0.44 20.70 7.78 87.66 0.68 21.38 16 11 O -0.64 -36.36 15.56 -3.07 -0.05 -36.41 16 12 C -0.12 -3.92 5.81 29.85 0.17 -3.74 16 13 C 0.15 5.08 4.96 86.38 0.43 5.51 16 14 N -0.71 -18.00 5.55 -472.16 -2.62 -20.62 16 15 C 0.54 15.56 7.56 85.06 0.64 16.20 16 16 O -0.60 -22.76 16.11 -4.62 -0.07 -22.84 16 17 C -0.22 -4.56 9.41 22.48 0.21 -4.35 16 18 C 0.02 0.44 9.39 22.50 0.21 0.65 16 19 C -0.04 -0.76 6.84 23.03 0.16 -0.60 16 20 C -0.16 -2.21 10.90 22.71 0.25 -1.97 16 21 C -0.23 -2.34 10.87 22.06 0.24 -2.10 16 22 C -0.01 -0.08 12.06 67.11 0.81 0.73 16 23 O -0.18 -2.86 10.18 -6.16 -0.06 -2.92 16 24 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 25 H 0.40 18.88 7.90 -92.71 -0.73 18.14 16 26 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 27 H 0.12 3.02 8.14 -2.39 -0.02 3.01 16 28 H 0.05 1.94 8.10 -2.38 -0.02 1.92 16 29 H 0.05 1.94 8.10 -2.39 -0.02 1.93 16 30 H 0.42 7.09 8.43 -92.71 -0.78 6.31 16 31 H 0.15 2.40 7.72 -2.91 -0.02 2.37 16 32 H 0.15 3.20 7.46 -2.91 -0.02 3.17 16 33 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.24 0.07 8.06 -2.91 -0.02 0.05 16 Total: -1.00 -78.26 320.99 2.59 -75.67 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.38 Total: 27.95 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 5.08 Total: 13.16 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -3.96 Total: -99.60 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -0.18 Total: -62.16 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -78.26 2.59 -75.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126761892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.299 kcal (2) G-P(sol) polarization free energy of solvation -78.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds