Wall clock time and date at job start Tue Mar 31 2020 00:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37980 * 119.92902 * 2 1 4 4 C 1.39555 * 119.85645 * 180.02562 * 3 2 1 5 5 C 1.47844 * 120.14240 * 180.02562 * 4 3 2 6 6 O 1.21555 * 120.00351 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99584 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99882 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46887 * 325.00491 * 8 7 5 10 10 C 1.53002 * 109.46727 * 85.00454 * 8 7 5 11 11 C 1.50701 * 109.46982 * 205.00321 * 8 7 5 12 12 H 1.07999 * 120.00160 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99395 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00617 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99384 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47337 * 59.99949 * 15 13 11 17 17 H 1.48504 * 109.47136 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47391 * 299.99484 * 15 13 11 19 19 C 1.39591 * 119.71132 * 0.02562 * 4 3 2 20 20 C 1.37943 * 119.85171 * 0.02562 * 19 4 3 21 21 N 1.48012 * 119.92417 * 179.97438 * 20 19 4 22 22 O 1.21796 * 120.00610 * 0.02562 * 21 20 19 23 23 O 1.21804 * 119.99888 * 179.97438 * 21 20 19 24 24 C 1.38337 * 119.93092 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47316 * 90.00012 * 1 2 3 26 26 H 1.08996 * 109.46957 * 209.99583 * 1 2 3 27 27 H 1.09002 * 109.47651 * 329.99433 * 1 2 3 28 28 H 1.08007 * 120.06897 * 0.28107 * 3 2 1 29 29 H 0.97001 * 120.00220 * 0.02562 * 7 5 4 30 30 H 1.09003 * 109.46658 * 180.02562 * 10 8 7 31 31 H 1.09005 * 109.46780 * 299.99640 * 10 8 7 32 32 H 1.08995 * 109.47444 * 59.99871 * 10 8 7 33 33 H 0.97004 * 120.00238 * 180.02562 * 14 13 11 34 34 H 1.08003 * 120.07579 * 179.97438 * 19 4 3 35 35 H 1.08003 * 119.85264 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5909 1.1940 -0.0005 5 6 4.3349 2.4716 0.0000 6 8 3.7312 3.5266 0.0014 7 7 5.6827 2.4665 0.0000 8 6 6.4201 3.7325 0.0012 9 1 5.8754 4.4706 -0.5876 10 6 6.5682 4.2350 1.4387 11 6 7.7856 3.5190 -0.5996 12 1 8.0751 2.5385 -0.9478 13 6 8.6652 4.5755 -0.7046 14 7 8.3126 5.7695 -0.2810 15 14 10.3576 4.3110 -1.4499 16 1 10.2134 3.8241 -2.8453 17 1 11.1051 5.5942 -1.4486 18 1 11.0996 3.3047 -0.6487 19 6 4.2812 -0.0192 -0.0016 20 6 3.5809 -1.2077 -0.0027 21 7 4.3112 -2.4951 -0.0044 22 8 5.5292 -2.5044 -0.0044 23 8 3.6942 -3.5453 -0.0049 24 6 2.1972 -1.1989 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6553 2.1311 0.0046 29 1 6.1645 1.6246 -0.0007 30 1 7.1164 5.1772 1.4395 31 1 5.5804 4.3894 1.8731 32 1 7.1127 3.4969 2.0274 33 1 8.9314 6.5128 -0.3553 34 1 5.3612 -0.0275 -0.0025 35 1 1.6536 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134489195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:22 Heat of formation + Delta-G solvation = -23.751788 kcal Electronic energy + Delta-G solvation = -20919.273268 eV Core-core repulsion = 17499.365966 eV Total energy + Delta-G solvation = -3419.907302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.29017 -40.25970 -38.46487 -36.65821 -35.04318 -33.72557 -32.55494 -31.98634 -29.05746 -27.55610 -26.65059 -25.35958 -24.24718 -22.08484 -21.20186 -19.71009 -19.11069 -18.68093 -17.62870 -17.34022 -16.69790 -16.20653 -15.64219 -15.11826 -14.69843 -14.40229 -14.03708 -13.95381 -13.23933 -12.74903 -12.62482 -12.51992 -12.33437 -12.15973 -11.80334 -11.64997 -11.27783 -11.22392 -11.17921 -11.02701 -10.86697 -10.42478 -10.30882 -9.74662 -9.49754 -9.40823 -9.16469 -8.64691 -8.14068 -6.19782 -4.29960 -0.31557 0.41099 1.17099 1.24333 2.67755 3.23360 3.28460 3.29744 3.61067 3.66409 4.03698 4.22507 4.31051 4.54829 4.59667 4.64999 4.89741 5.13099 5.14052 5.18384 5.23389 5.42816 5.56841 5.73454 5.86956 5.98506 6.30025 6.70596 6.82248 7.01219 7.21951 7.38756 7.53404 7.58600 7.77906 8.03303 8.41121 8.61249 8.83968 9.37594 10.86122 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.004531 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.078550 B = 6178.085326 C = 7363.318745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.017 4.017 4 C -0.111 4.111 5 C 0.543 3.457 6 O -0.541 6.541 7 N -0.695 5.695 8 C 0.264 3.736 9 H 0.053 0.947 10 C -0.148 4.148 11 C -0.539 4.539 12 H 0.062 0.938 13 C 0.069 3.931 14 N -0.883 5.883 15 Si 0.903 3.097 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.034 4.034 20 C -0.046 4.046 21 N 0.030 4.970 22 O -0.153 6.153 23 O -0.164 6.164 24 C -0.046 4.046 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.390 0.610 30 H 0.093 0.907 31 H 0.015 0.985 32 H 0.028 0.972 33 H 0.266 0.734 34 H 0.159 0.841 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -11.894 1.187 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.036 4.036 4 C -0.115 4.115 5 C 0.327 3.673 6 O -0.420 6.420 7 N -0.343 5.343 8 C 0.163 3.837 9 H 0.070 0.930 10 C -0.207 4.207 11 C -0.577 4.577 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.520 5.520 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.053 4.053 20 C -0.129 4.129 21 N 0.550 4.450 22 O -0.371 6.371 23 O -0.379 6.379 24 C -0.066 4.066 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.174 0.826 29 H 0.224 0.776 30 H 0.112 0.888 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.176 0.824 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.888 -10.282 1.206 17.322 hybrid contribution 1.495 -0.922 -0.373 1.796 sum -12.394 -11.204 0.833 16.728 Atomic orbital electron populations 1.20841 0.88835 1.03929 1.03418 1.19897 0.97446 0.91221 1.00616 1.21706 0.92926 0.99208 0.89783 1.20407 0.94503 0.93499 1.03075 1.17912 0.83433 0.87317 0.78677 1.90767 1.68518 1.31530 1.51206 1.46605 1.04732 1.12417 1.70518 1.18877 0.90712 0.79792 0.94348 0.92960 1.22095 0.98277 1.03230 0.97061 1.21150 0.98423 0.96224 1.41894 0.91938 1.24871 0.98800 0.94849 0.94991 1.69880 1.36328 1.00235 1.45552 0.86473 0.83176 0.77560 0.79733 1.20100 1.21071 1.19998 1.21279 1.02241 0.89408 0.92417 1.20944 0.92626 0.83517 1.15799 1.43582 1.01301 1.02685 0.97455 1.94583 0.95271 1.94172 1.53040 1.94517 1.69427 1.20342 1.53638 1.21032 0.90877 1.00353 0.94290 0.90150 0.90695 0.90317 0.82647 0.77628 0.88843 0.96574 0.95246 0.92389 0.82391 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.01 36.00 0.36 -0.30 16 2 C -0.09 -0.83 5.87 -104.68 -0.61 -1.45 16 3 C -0.02 -0.20 9.24 -39.19 -0.36 -0.56 16 4 C -0.11 -1.58 5.87 -104.97 -0.62 -2.20 16 5 C 0.54 10.23 7.74 -12.33 -0.10 10.14 16 6 O -0.54 -11.98 16.01 5.32 0.09 -11.89 16 7 N -0.70 -13.91 5.02 -55.87 -0.28 -14.19 16 8 C 0.26 6.48 2.56 -69.08 -0.18 6.31 16 9 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 10 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 11 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 14 N -0.88 -24.26 11.32 55.43 0.63 -23.63 16 15 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C -0.03 -0.44 9.05 -39.18 -0.35 -0.80 16 20 C -0.05 -0.57 6.85 -80.01 -0.55 -1.12 16 21 N 0.03 0.42 4.45 33.93 0.15 0.57 16 22 O -0.15 -2.34 18.44 -29.46 -0.54 -2.88 16 23 O -0.16 -2.30 18.44 -29.46 -0.54 -2.84 16 24 C -0.05 -0.46 9.20 -39.49 -0.36 -0.82 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 27 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.16 1.73 7.65 -52.48 -0.40 1.33 16 29 H 0.39 6.79 6.57 -40.82 -0.27 6.52 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.16 2.01 5.95 -52.48 -0.31 1.70 16 35 H 0.15 1.21 7.60 -52.48 -0.40 0.81 16 LS Contribution 312.29 15.07 4.71 4.71 Total: -1.00 -30.06 312.29 -7.38 -37.44 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -3.74 Total: 3.94 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.82 Total: -6.53 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.50 Total: -37.25 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.00 Total: -17.62 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.06 -7.38 -37.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134489195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.688 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds