Wall clock time and date at job start Tue Mar 31 2020 00:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37980 * 119.92902 * 2 1 4 4 C 1.39555 * 119.85645 * 180.02562 * 3 2 1 5 5 C 1.47844 * 120.14240 * 180.02562 * 4 3 2 6 6 O 1.21555 * 120.00351 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99584 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99882 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46887 * 325.00491 * 8 7 5 10 10 C 1.53002 * 109.46727 * 85.00454 * 8 7 5 11 11 C 1.50701 * 109.46982 * 205.00321 * 8 7 5 12 12 H 1.07999 * 120.00160 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99395 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00617 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99384 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47337 * 59.99949 * 15 13 11 17 17 H 1.48504 * 109.47136 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47391 * 299.99484 * 15 13 11 19 19 C 1.39591 * 119.71132 * 0.02562 * 4 3 2 20 20 C 1.37943 * 119.85171 * 0.02562 * 19 4 3 21 21 N 1.48012 * 119.92417 * 179.97438 * 20 19 4 22 22 O 1.21796 * 120.00610 * 0.02562 * 21 20 19 23 23 O 1.21804 * 119.99888 * 179.97438 * 21 20 19 24 24 C 1.38337 * 119.93092 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47316 * 90.00012 * 1 2 3 26 26 H 1.08996 * 109.46957 * 209.99583 * 1 2 3 27 27 H 1.09002 * 109.47651 * 329.99433 * 1 2 3 28 28 H 1.08007 * 120.06897 * 0.28107 * 3 2 1 29 29 H 0.97001 * 120.00220 * 0.02562 * 7 5 4 30 30 H 1.09003 * 109.46658 * 180.02562 * 10 8 7 31 31 H 1.09005 * 109.46780 * 299.99640 * 10 8 7 32 32 H 1.08995 * 109.47444 * 59.99871 * 10 8 7 33 33 H 0.97004 * 120.00238 * 180.02562 * 14 13 11 34 34 H 1.08003 * 120.07579 * 179.97438 * 19 4 3 35 35 H 1.08003 * 119.85264 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5909 1.1940 -0.0005 5 6 4.3349 2.4716 0.0000 6 8 3.7312 3.5266 0.0014 7 7 5.6827 2.4665 0.0000 8 6 6.4201 3.7325 0.0012 9 1 5.8754 4.4706 -0.5876 10 6 6.5682 4.2350 1.4387 11 6 7.7856 3.5190 -0.5996 12 1 8.0751 2.5385 -0.9478 13 6 8.6652 4.5755 -0.7046 14 7 8.3126 5.7695 -0.2810 15 14 10.3576 4.3110 -1.4499 16 1 10.2134 3.8241 -2.8453 17 1 11.1051 5.5942 -1.4486 18 1 11.0996 3.3047 -0.6487 19 6 4.2812 -0.0192 -0.0016 20 6 3.5809 -1.2077 -0.0027 21 7 4.3112 -2.4951 -0.0044 22 8 5.5292 -2.5044 -0.0044 23 8 3.6942 -3.5453 -0.0049 24 6 2.1972 -1.1989 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6553 2.1311 0.0046 29 1 6.1645 1.6246 -0.0007 30 1 7.1164 5.1772 1.4395 31 1 5.5804 4.3894 1.8731 32 1 7.1127 3.4969 2.0274 33 1 8.9314 6.5128 -0.3553 34 1 5.3612 -0.0275 -0.0025 35 1 1.6536 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134489195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:21 Heat of formation + Delta-G solvation = -41.487516 kcal Electronic energy + Delta-G solvation = -20920.042347 eV Core-core repulsion = 17499.365966 eV Total energy + Delta-G solvation = -3420.676381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.35160 -41.46801 -39.79980 -37.74934 -36.86434 -34.84049 -34.09438 -33.19303 -30.81717 -28.27764 -27.68936 -27.38607 -25.53874 -23.06722 -22.83506 -21.27216 -20.28509 -19.73178 -18.83749 -18.69172 -17.86580 -17.54716 -17.23246 -16.58559 -16.16126 -15.91274 -15.19461 -14.82989 -14.64035 -14.36891 -13.79269 -13.46102 -13.32425 -13.20776 -13.06680 -12.93777 -12.89586 -12.77731 -12.72721 -12.34400 -12.32539 -12.31483 -12.18409 -11.18860 -11.09673 -10.76781 -10.63442 -10.27155 -9.90661 -8.21310 -6.38990 -1.33794 -0.59199 0.16104 0.22246 1.44581 1.45803 1.53471 1.55526 2.16524 2.37692 2.43912 3.09504 3.16437 3.23423 3.60860 3.72062 3.73183 3.90095 4.20193 4.38343 4.61185 4.69454 4.78801 4.83497 4.86615 4.91807 5.02128 5.11633 5.18651 5.34212 5.40211 5.49221 5.60944 5.80604 6.03476 6.41902 6.64954 6.73129 7.18004 7.35805 8.84692 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.004531 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.078550 B = 6178.085326 C = 7363.318745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.014 4.014 4 C -0.127 4.127 5 C 0.544 3.456 6 O -0.580 6.580 7 N -0.697 5.697 8 C 0.270 3.730 9 H 0.008 0.992 10 C -0.135 4.135 11 C -0.553 4.553 12 H 0.071 0.929 13 C 0.020 3.980 14 N -0.914 5.914 15 Si 0.970 3.030 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.035 4.035 20 C -0.055 4.055 21 N 0.031 4.969 22 O -0.199 6.199 23 O -0.143 6.143 24 C -0.028 4.028 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.159 0.841 29 H 0.403 0.597 30 H 0.070 0.930 31 H 0.016 0.984 32 H 0.039 0.961 33 H 0.267 0.733 34 H 0.154 0.846 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.781 -14.133 1.007 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.073 4.073 3 C -0.033 4.033 4 C -0.131 4.131 5 C 0.330 3.670 6 O -0.462 6.462 7 N -0.345 5.345 8 C 0.167 3.833 9 H 0.026 0.974 10 C -0.194 4.194 11 C -0.591 4.591 12 H 0.089 0.911 13 C -0.181 4.181 14 N -0.552 5.552 15 Si 0.795 3.205 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.055 4.055 20 C -0.138 4.138 21 N 0.549 4.451 22 O -0.405 6.405 23 O -0.366 6.366 24 C -0.047 4.047 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.177 0.823 29 H 0.239 0.761 30 H 0.089 0.911 31 H 0.035 0.965 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.172 0.828 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -15.357 -12.529 1.029 19.846 hybrid contribution 1.760 -0.287 -0.315 1.811 sum -13.597 -12.816 0.714 18.698 Atomic orbital electron populations 1.20994 0.85707 1.05489 1.04822 1.20226 0.99242 0.89617 0.98214 1.21883 0.91748 1.00701 0.88993 1.19876 0.95245 0.91277 1.06683 1.18487 0.82866 0.88664 0.76943 1.90735 1.69107 1.33580 1.52792 1.46340 1.05477 1.11460 1.71252 1.18467 0.90319 0.80799 0.93710 0.97427 1.21914 0.98021 1.02334 0.97100 1.21479 0.98921 0.96710 1.41948 0.91066 1.25732 1.02541 0.94525 0.95309 1.70020 1.37594 1.01030 1.46535 0.85423 0.78594 0.77544 0.78959 1.19672 1.20933 1.19024 1.21142 1.02192 0.89505 0.92622 1.21006 0.93448 0.82350 1.16997 1.43761 1.01205 1.03123 0.97037 1.94601 0.95958 1.94445 1.55520 1.94484 1.69179 1.20848 1.52055 1.21469 0.89669 1.01909 0.91605 0.88622 0.88471 0.89543 0.82319 0.76136 0.91109 0.96484 0.94166 0.92376 0.82834 0.79742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 71.23 0.71 -0.08 16 2 C -0.07 -1.06 5.87 -19.90 -0.12 -1.17 16 3 C -0.01 -0.31 9.24 22.53 0.21 -0.10 16 4 C -0.13 -3.56 5.87 -20.09 -0.12 -3.68 16 5 C 0.54 21.06 7.74 86.79 0.67 21.73 16 6 O -0.58 -26.67 16.01 -3.89 -0.06 -26.74 16 7 N -0.70 -28.74 5.02 -448.95 -2.25 -31.00 16 8 C 0.27 13.78 2.56 44.24 0.11 13.89 16 9 H 0.01 0.47 7.58 -2.39 -0.02 0.45 16 10 C -0.13 -6.71 9.26 71.98 0.67 -6.04 16 11 C -0.55 -29.04 8.73 25.60 0.22 -28.82 16 12 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 13 C 0.02 1.04 5.30 84.66 0.45 1.49 16 14 N -0.91 -51.53 11.32 21.45 0.24 -51.28 16 15 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 C -0.03 -0.89 9.05 22.53 0.20 -0.69 16 20 C -0.06 -1.26 6.85 36.34 0.25 -1.01 16 21 N 0.03 0.83 4.45 -46.55 -0.21 0.63 16 22 O -0.20 -6.03 18.44 18.89 0.35 -5.69 16 23 O -0.14 -3.62 18.44 18.88 0.35 -3.27 16 24 C -0.03 -0.44 9.20 22.33 0.21 -0.23 16 25 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.10 0.33 8.08 -2.39 -0.02 0.31 16 27 H 0.09 0.54 8.08 -2.39 -0.02 0.52 16 28 H 0.16 3.32 7.65 -2.91 -0.02 3.30 16 29 H 0.40 14.37 6.57 -92.71 -0.61 13.76 16 30 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 31 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.15 3.98 5.95 -2.91 -0.02 3.96 16 35 H 0.19 1.89 7.60 -2.91 -0.02 1.86 16 Total: -1.00 -66.99 312.29 4.44 -62.55 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.53 Total: 15.65 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 3.47 Total: -4.71 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -2.22 Total: -81.66 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: 0.63 Total: -35.69 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -66.99 4.44 -62.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134489195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.064 kcal (2) G-P(sol) polarization free energy of solvation -66.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds