Wall clock time and date at job start Tue Mar 31 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37983 * 119.92444 * 2 1 4 4 C 1.39562 * 119.85074 * 180.02562 * 3 2 1 5 5 C 1.47843 * 120.14284 * 180.02562 * 4 3 2 6 6 O 1.21552 * 120.00198 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99841 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99928 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47251 * 35.00226 * 8 7 5 10 10 C 1.53004 * 109.46747 * 275.00028 * 8 7 5 11 11 C 1.50700 * 109.47078 * 155.00347 * 8 7 5 12 12 H 1.08002 * 119.99919 * 5.45971 * 11 8 7 13 13 C 1.37875 * 120.00076 * 185.45650 * 11 8 7 14 14 N 1.31513 * 119.99632 * 9.56070 * 13 11 8 15 15 Si 1.86798 * 120.00150 * 189.55561 * 13 11 8 16 16 H 1.48508 * 109.46685 * 84.99670 * 15 13 11 17 17 H 1.48499 * 109.47234 * 204.99766 * 15 13 11 18 18 H 1.48498 * 109.47289 * 324.99910 * 15 13 11 19 19 C 1.39603 * 119.71039 * 0.02562 * 4 3 2 20 20 C 1.37936 * 119.84984 * 0.02562 * 19 4 3 21 21 N 1.48019 * 119.92012 * 179.97438 * 20 19 4 22 22 O 1.21799 * 120.00472 * 359.97438 * 21 20 19 23 23 O 1.21801 * 119.99396 * 179.97438 * 21 20 19 24 24 C 1.38338 * 119.93143 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47674 * 89.99484 * 1 2 3 26 26 H 1.09005 * 109.47199 * 210.00101 * 1 2 3 27 27 H 1.09007 * 109.47142 * 329.99127 * 1 2 3 28 28 H 1.08001 * 120.07783 * 359.97438 * 3 2 1 29 29 H 0.97005 * 119.99966 * 0.02562 * 7 5 4 30 30 H 1.08998 * 109.47219 * 63.68313 * 10 8 7 31 31 H 1.09001 * 109.46600 * 183.67997 * 10 8 7 32 32 H 1.08998 * 109.47102 * 303.68003 * 10 8 7 33 33 H 0.97008 * 119.99880 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.07127 * 179.71950 * 19 4 3 35 35 H 1.08004 * 119.84484 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1959 0.0000 4 6 3.5909 1.1941 -0.0005 5 6 4.3350 2.4716 0.0000 6 8 3.7313 3.5266 0.0005 7 7 5.6828 2.4665 0.0000 8 6 6.4201 3.7324 0.0012 9 1 5.8756 4.4695 0.5913 10 6 6.5681 4.2376 -1.4355 11 6 7.7857 3.5179 0.6013 12 1 8.1087 2.5219 0.8661 13 6 8.6226 4.5930 0.8124 14 7 8.1675 5.8185 0.6691 15 14 10.4027 4.3089 1.3022 16 1 11.2227 4.0917 0.0832 17 1 10.9101 5.4967 2.0349 18 1 10.4905 3.1125 2.1775 19 6 4.2813 -0.0193 -0.0016 20 6 3.5809 -1.2077 -0.0027 21 7 4.3113 -2.4951 -0.0044 22 8 5.5293 -2.5044 -0.0054 23 8 3.6942 -3.5452 -0.0049 24 6 2.1972 -1.1989 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5140 28 1 1.6554 2.1312 -0.0004 29 1 6.1646 1.6246 -0.0007 30 1 5.5827 4.4550 -1.8475 31 1 7.1724 5.1448 -1.4411 32 1 7.0546 3.4731 -2.0411 33 1 8.7563 6.5750 0.8180 34 1 5.3612 -0.0275 -0.0066 35 1 1.6536 -2.1321 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134489211.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:27 Heat of formation + Delta-G solvation = -25.031219 kcal Electronic energy + Delta-G solvation = -20912.692857 eV Core-core repulsion = 17492.730074 eV Total energy + Delta-G solvation = -3419.962782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -42.28999 -40.25887 -38.46500 -36.65885 -35.03260 -33.71954 -32.54113 -31.98712 -29.15822 -27.56066 -26.65149 -25.33210 -24.25862 -22.08469 -21.23336 -19.72157 -19.11189 -18.68173 -17.62883 -17.33910 -16.69842 -16.20002 -15.64108 -15.11933 -14.69295 -14.38208 -14.05263 -13.93826 -13.24592 -12.74626 -12.60717 -12.53399 -12.33101 -12.15871 -11.90634 -11.65049 -11.27700 -11.22440 -11.15461 -11.11230 -10.85782 -10.47985 -10.35252 -9.74570 -9.48182 -9.40748 -9.21827 -8.59791 -8.16651 -6.22375 -4.28647 -0.31502 0.41135 1.17112 1.24318 2.67816 3.22563 3.29408 3.30787 3.60882 3.66617 4.03782 4.22740 4.31397 4.54900 4.59751 4.65061 4.89710 5.12062 5.14176 5.18357 5.23440 5.42817 5.56974 5.73541 5.87022 5.98553 6.30009 6.63960 6.74722 6.94337 7.19663 7.36076 7.53399 7.56578 7.70917 7.93768 8.41160 8.62604 8.84300 9.37502 10.86045 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.004537 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.784261 B = 6170.626462 C = 7370.043022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.017 4.017 4 C -0.111 4.111 5 C 0.543 3.457 6 O -0.540 6.540 7 N -0.695 5.695 8 C 0.262 3.738 9 H 0.060 0.940 10 C -0.142 4.142 11 C -0.541 4.541 12 H 0.063 0.937 13 C 0.071 3.929 14 N -0.880 5.880 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.034 4.034 20 C -0.046 4.046 21 N 0.030 4.970 22 O -0.153 6.153 23 O -0.164 6.164 24 C -0.046 4.046 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.390 0.610 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.159 0.841 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 -12.049 -1.998 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.036 4.036 4 C -0.115 4.115 5 C 0.327 3.673 6 O -0.419 6.419 7 N -0.343 5.343 8 C 0.160 3.840 9 H 0.077 0.923 10 C -0.201 4.201 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.134 4.134 14 N -0.517 5.517 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.053 4.053 20 C -0.129 4.129 21 N 0.550 4.450 22 O -0.371 6.371 23 O -0.379 6.379 24 C -0.066 4.066 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.174 0.826 29 H 0.224 0.776 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.176 0.824 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.746 -10.434 -1.978 17.371 hybrid contribution 1.563 -0.894 0.234 1.816 sum -12.183 -11.328 -1.744 16.727 Atomic orbital electron populations 1.20843 0.88836 1.03954 1.03394 1.19898 0.97446 0.91220 1.00613 1.21709 0.92926 0.99210 0.89771 1.20410 0.94502 0.93493 1.03078 1.17911 0.83433 0.87317 0.78661 1.90769 1.68506 1.31525 1.51142 1.46585 1.04739 1.12367 1.70572 1.18888 0.91070 0.80048 0.93951 0.92266 1.22028 0.98697 1.01649 0.97729 1.21136 0.99067 0.94219 1.43472 0.91882 1.24876 0.98993 0.94803 0.94693 1.69977 1.35720 0.97988 1.47981 0.86490 0.84282 0.77867 0.78687 1.20297 1.21114 1.19769 1.21278 1.02234 0.89408 0.92420 1.20942 0.92626 0.83514 1.15802 1.43584 1.01299 1.02688 0.97452 1.94583 0.95271 1.94172 1.53049 1.94516 1.69417 1.20354 1.53633 1.21031 0.90878 1.00354 0.94290 0.90168 0.90688 0.90304 0.82641 0.77645 0.96069 0.90566 0.95041 0.92428 0.82395 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.01 36.00 0.36 -0.30 16 2 C -0.09 -0.83 5.87 -104.68 -0.61 -1.45 16 3 C -0.02 -0.20 9.24 -39.18 -0.36 -0.56 16 4 C -0.11 -1.58 5.87 -104.96 -0.62 -2.19 16 5 C 0.54 10.21 7.74 -12.33 -0.10 10.12 16 6 O -0.54 -11.96 16.01 5.32 0.09 -11.87 16 7 N -0.70 -13.85 5.02 -55.88 -0.28 -14.13 16 8 C 0.26 6.40 2.42 -69.08 -0.17 6.23 16 9 H 0.06 1.68 7.52 -51.93 -0.39 1.29 16 10 C -0.14 -3.35 9.36 37.16 0.35 -3.00 16 11 C -0.54 -13.96 8.66 -34.44 -0.30 -14.25 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 14 N -0.88 -24.40 12.16 55.43 0.67 -23.73 16 15 Si 0.90 20.32 29.55 -169.99 -5.02 15.30 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C -0.03 -0.44 9.05 -39.18 -0.35 -0.79 16 20 C -0.05 -0.57 6.84 -80.01 -0.55 -1.12 16 21 N 0.03 0.42 4.45 33.93 0.15 0.57 16 22 O -0.15 -2.34 18.44 -29.46 -0.54 -2.88 16 23 O -0.16 -2.29 18.44 -29.46 -0.54 -2.84 16 24 C -0.05 -0.46 9.20 -39.50 -0.36 -0.82 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 27 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.16 1.73 7.65 -52.49 -0.40 1.33 16 29 H 0.39 6.74 6.56 -40.82 -0.27 6.48 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.94 6.83 -51.93 -0.35 1.59 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.16 2.00 5.95 -52.49 -0.31 1.69 16 35 H 0.15 1.21 7.60 -52.48 -0.40 0.81 16 LS Contribution 313.59 15.07 4.73 4.73 Total: -1.00 -30.24 313.59 -7.33 -37.58 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.77 Total: 3.65 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.80 Total: -6.37 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.54 Total: -37.29 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -1.00 Total: -17.59 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.24 -7.33 -37.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134489211.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.545 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds