Wall clock time and date at job start Tue Mar 31 2020 00:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37983 * 119.92444 * 2 1 4 4 C 1.39562 * 119.85074 * 180.02562 * 3 2 1 5 5 C 1.47843 * 120.14284 * 180.02562 * 4 3 2 6 6 O 1.21552 * 120.00198 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99841 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99928 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47251 * 35.00226 * 8 7 5 10 10 C 1.53004 * 109.46747 * 275.00028 * 8 7 5 11 11 C 1.50700 * 109.47078 * 155.00347 * 8 7 5 12 12 H 1.08002 * 119.99919 * 5.45971 * 11 8 7 13 13 C 1.37875 * 120.00076 * 185.45650 * 11 8 7 14 14 N 1.31513 * 119.99632 * 9.56070 * 13 11 8 15 15 Si 1.86798 * 120.00150 * 189.55561 * 13 11 8 16 16 H 1.48508 * 109.46685 * 84.99670 * 15 13 11 17 17 H 1.48499 * 109.47234 * 204.99766 * 15 13 11 18 18 H 1.48498 * 109.47289 * 324.99910 * 15 13 11 19 19 C 1.39603 * 119.71039 * 0.02562 * 4 3 2 20 20 C 1.37936 * 119.84984 * 0.02562 * 19 4 3 21 21 N 1.48019 * 119.92012 * 179.97438 * 20 19 4 22 22 O 1.21799 * 120.00472 * 359.97438 * 21 20 19 23 23 O 1.21801 * 119.99396 * 179.97438 * 21 20 19 24 24 C 1.38338 * 119.93143 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47674 * 89.99484 * 1 2 3 26 26 H 1.09005 * 109.47199 * 210.00101 * 1 2 3 27 27 H 1.09007 * 109.47142 * 329.99127 * 1 2 3 28 28 H 1.08001 * 120.07783 * 359.97438 * 3 2 1 29 29 H 0.97005 * 119.99966 * 0.02562 * 7 5 4 30 30 H 1.08998 * 109.47219 * 63.68313 * 10 8 7 31 31 H 1.09001 * 109.46600 * 183.67997 * 10 8 7 32 32 H 1.08998 * 109.47102 * 303.68003 * 10 8 7 33 33 H 0.97008 * 119.99880 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.07127 * 179.71950 * 19 4 3 35 35 H 1.08004 * 119.84484 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1959 0.0000 4 6 3.5909 1.1941 -0.0005 5 6 4.3350 2.4716 0.0000 6 8 3.7313 3.5266 0.0005 7 7 5.6828 2.4665 0.0000 8 6 6.4201 3.7324 0.0012 9 1 5.8756 4.4695 0.5913 10 6 6.5681 4.2376 -1.4355 11 6 7.7857 3.5179 0.6013 12 1 8.1087 2.5219 0.8661 13 6 8.6226 4.5930 0.8124 14 7 8.1675 5.8185 0.6691 15 14 10.4027 4.3089 1.3022 16 1 11.2227 4.0917 0.0832 17 1 10.9101 5.4967 2.0349 18 1 10.4905 3.1125 2.1775 19 6 4.2813 -0.0193 -0.0016 20 6 3.5809 -1.2077 -0.0027 21 7 4.3113 -2.4951 -0.0044 22 8 5.5293 -2.5044 -0.0054 23 8 3.6942 -3.5452 -0.0049 24 6 2.1972 -1.1989 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5140 28 1 1.6554 2.1312 -0.0004 29 1 6.1646 1.6246 -0.0007 30 1 5.5827 4.4550 -1.8475 31 1 7.1724 5.1448 -1.4411 32 1 7.0546 3.4731 -2.0411 33 1 8.7563 6.5750 0.8180 34 1 5.3612 -0.0275 -0.0066 35 1 1.6536 -2.1321 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134489211.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:25 Heat of formation + Delta-G solvation = -43.019577 kcal Electronic energy + Delta-G solvation = -20913.472890 eV Core-core repulsion = 17492.730074 eV Total energy + Delta-G solvation = -3420.742816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.34893 -41.46425 -39.79614 -37.74741 -36.84445 -34.82550 -34.09429 -33.19857 -30.90208 -28.27753 -27.68710 -27.34849 -25.55041 -23.06487 -22.85935 -21.27472 -20.28338 -19.72995 -18.83496 -18.68928 -17.86084 -17.54231 -17.23129 -16.57413 -16.14649 -15.90510 -15.19854 -14.82594 -14.62510 -14.36337 -13.88207 -13.46124 -13.34607 -13.20195 -13.04371 -12.99705 -12.91062 -12.73016 -12.72235 -12.41061 -12.34180 -12.32185 -12.17463 -11.22835 -11.07323 -10.76461 -10.61057 -10.27013 -9.91502 -8.24634 -6.38078 -1.33530 -0.58916 0.16324 0.22452 1.43893 1.44958 1.54098 1.55910 2.16879 2.38160 2.43626 3.08280 3.16666 3.23733 3.61106 3.72288 3.73397 3.90339 4.20514 4.38545 4.61303 4.67464 4.78428 4.82547 4.84278 4.91939 4.96956 5.11604 5.18789 5.32318 5.40316 5.49286 5.57444 5.77098 5.96194 6.42152 6.66860 6.73279 7.18575 7.35554 8.84461 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.004537 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.784261 B = 6170.626462 C = 7370.043022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.014 4.014 4 C -0.127 4.127 5 C 0.544 3.456 6 O -0.580 6.580 7 N -0.697 5.697 8 C 0.268 3.732 9 H 0.012 0.988 10 C -0.129 4.129 11 C -0.553 4.553 12 H 0.072 0.928 13 C 0.021 3.979 14 N -0.915 5.915 15 Si 0.967 3.033 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.034 4.034 20 C -0.055 4.055 21 N 0.031 4.969 22 O -0.198 6.198 23 O -0.143 6.143 24 C -0.028 4.028 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.403 0.597 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.267 0.733 34 H 0.154 0.846 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.536 -14.366 -2.037 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.073 4.073 3 C -0.033 4.033 4 C -0.131 4.131 5 C 0.330 3.670 6 O -0.462 6.462 7 N -0.345 5.345 8 C 0.165 3.835 9 H 0.030 0.970 10 C -0.188 4.188 11 C -0.591 4.591 12 H 0.090 0.910 13 C -0.180 4.180 14 N -0.553 5.553 15 Si 0.792 3.208 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.054 4.054 20 C -0.138 4.138 21 N 0.549 4.451 22 O -0.405 6.405 23 O -0.366 6.366 24 C -0.047 4.047 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.177 0.823 29 H 0.239 0.761 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.172 0.828 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.129 -12.762 -2.020 19.895 hybrid contribution 1.800 -0.239 0.251 1.833 sum -13.329 -13.001 -1.769 18.703 Atomic orbital electron populations 1.20996 0.85722 1.05457 1.04842 1.20226 0.99236 0.89622 0.98222 1.21884 0.91766 1.00690 0.89000 1.19879 0.95234 0.91284 1.06672 1.18485 0.82883 0.88650 0.76940 1.90737 1.69108 1.33591 1.52758 1.46325 1.05469 1.11432 1.71277 1.18479 0.90551 0.80969 0.93537 0.97028 1.21849 0.98374 1.01014 0.97566 1.21472 0.99612 0.94659 1.43332 0.91013 1.25734 1.03086 0.94473 0.94682 1.70110 1.37170 0.98873 1.49119 0.85431 0.79093 0.77765 0.78529 1.19520 1.21149 1.18967 1.21143 1.02202 0.89487 0.92609 1.21004 0.93443 0.82355 1.16994 1.43763 1.01205 1.03123 0.97035 1.94601 0.95953 1.94444 1.55496 1.94484 1.69172 1.20859 1.52079 1.21466 0.89682 1.01898 0.91618 0.88550 0.88507 0.89596 0.82341 0.76124 0.96024 0.92856 0.93394 0.92407 0.82797 0.79754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 71.24 0.71 -0.08 16 2 C -0.07 -1.06 5.87 -19.90 -0.12 -1.17 16 3 C -0.01 -0.31 9.24 22.53 0.21 -0.10 16 4 C -0.13 -3.55 5.87 -20.09 -0.12 -3.67 16 5 C 0.54 21.01 7.74 86.78 0.67 21.69 16 6 O -0.58 -26.69 16.01 -3.88 -0.06 -26.75 16 7 N -0.70 -28.57 5.02 -448.97 -2.25 -30.83 16 8 C 0.27 13.59 2.42 44.25 0.11 13.70 16 9 H 0.01 0.71 7.52 -2.39 -0.02 0.69 16 10 C -0.13 -6.27 9.36 71.98 0.67 -5.59 16 11 C -0.55 -29.01 8.66 25.60 0.22 -28.79 16 12 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 13 C 0.02 1.13 5.17 84.65 0.44 1.57 16 14 N -0.92 -52.20 12.16 21.45 0.26 -51.94 16 15 Si 0.97 41.85 29.55 68.60 2.03 43.88 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 C -0.03 -0.88 9.05 22.53 0.20 -0.68 16 20 C -0.06 -1.25 6.84 36.34 0.25 -1.00 16 21 N 0.03 0.83 4.45 -46.56 -0.21 0.62 16 22 O -0.20 -6.00 18.44 18.89 0.35 -5.65 16 23 O -0.14 -3.62 18.44 18.88 0.35 -3.27 16 24 C -0.03 -0.44 9.20 22.33 0.21 -0.23 16 25 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.10 0.34 8.08 -2.38 -0.02 0.32 16 27 H 0.09 0.55 8.08 -2.38 -0.02 0.53 16 28 H 0.16 3.33 7.65 -2.91 -0.02 3.30 16 29 H 0.40 14.23 6.56 -92.70 -0.61 13.63 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 2.81 6.83 -2.39 -0.02 2.79 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 34 H 0.15 3.96 5.95 -2.91 -0.02 3.94 16 35 H 0.19 1.88 7.60 -2.91 -0.02 1.86 16 Total: -1.00 -67.56 313.59 4.44 -63.11 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.53 Total: 15.18 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 3.46 Total: -4.37 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -2.20 Total: -82.14 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: 0.63 Total: -35.67 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -67.56 4.44 -63.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134489211.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.095 kcal (2) G-P(sol) polarization free energy of solvation -67.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds